Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Reverse (-)

63447523 .. 63448280

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG470000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTAACCCCGCACAGGAGCTTCGCATATGCGAAGGTTCTAAATTCCTACCAGATCATCATCGCCGGAGGCGGTTCCCGCCACACCATGTTCAGTGCCACCGGGAGCAGGATGACCTCGTTGGAGAGGTATGATATATGTAGAGACGAGTGGGTGGCAATGGAAGGGGTACATAGCTTTCGGGCGGGGTGTGTGGGGTTCTTTGTTGGAGATGTGGAAGAGAGGGAGTTTTGGGTGATGGGCAGGTACGGCCAGGCCAGGACTATATCAGAGGTGGTGCCGGTGGACAAGTATTACCAGAATGCAGTGGTGATGGAATTGACGAATCGAAATAGTGATGGCAGGTGGAGGGAGACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

120

Amino Acids

13.73

Weight (kDa)

6.83

Isoelectric Point (pI)

26.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	333
Acc36I	ACCTGC	2 cut(s)	234, 333
AccB1I	GGYRCC	1 cut(s)	277
AciI	CCGC	4 cut(s)	11, 72, 79, 185
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	43
AfaI	GTAC	2 cut(s)	171, 248
AfiI	CCNNNNNNNGG	2 cut(s)	15, 108
AjnI	CCWGG	2 cut(s)	252, 257
AluBI	AGCT	2 cut(s)	21, 177
AluI	AGCT	2 cut(s)	21, 177
Alw26I	GTCTC	2 cut(s)	138, 347
AoxI	GGCC	2 cut(s)	250, 255
ApoI	RAATTY	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	247, 322
BanI	GGYRCC	1 cut(s)	277
BccI	CCATC	3 cut(s)	232, 307, 332
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	2 cut(s)	254, 259
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	138, 347
BfuAI	ACCTGC	2 cut(s)	234, 333
Bme1390I	CCNGG	3 cut(s)	103, 254, 259
BmiI	GGNNCC	2 cut(s)	76, 279
BmrFI	CCNGG	3 cut(s)	103, 254, 259
BpuMI	CCSGG	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 108
Bse118I	RCCGGY	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	254, 259
BseGI	GGATG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	15, 108
BseMI	GCAATG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	252, 257
BshNI	GGYRCC	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	66, 102, 281
BslI	CCNNNNNNNGG	2 cut(s)	15, 108
BsmAI	GTCTC	2 cut(s)	138, 347
BsmBI	CGTCTC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	252, 257
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	4 cut(s)	11, 72, 79, 185
BspANI	GGCC	2 cut(s)	252, 257
BspLI	GGNNCC	2 cut(s)	76, 279
BspMI	ACCTGC	2 cut(s)	234, 333
BspT107I	GGYRCC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssMI	GATC	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	254, 259
Bst6I	CTCTTC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	138, 347
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 78, 249
BstNI	CCWGG	2 cut(s)	254, 259
BstSCI	CCNGG	3 cut(s)	101, 252, 257
BsuRI	GGCC	2 cut(s)	252, 257
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	100, 312
BveI	ACCTGC	2 cut(s)	234, 333
Cfr10I	RCCGGY	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	170, 247
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	4 cut(s)	21, 177, 252, 257
CviKI_1	RGCY	4 cut(s)	21, 177, 252, 257
CviQI	GTAC	2 cut(s)	170, 247
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	252, 257
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	1 cut(s)	91
FaiI	YATR	8 cut(s)	28, 30, 89, 132, 137, 139, 174, 266
FatI	CATG	1 cut(s)	87
FauI	CCCGC	3 cut(s)	18, 86, 178
FauNDI	CATATG	1 cut(s)	28
FokI	GGATG	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	252, 257
HapII	CCGG	3 cut(s)	66, 102, 281
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	3 cut(s)	66, 102, 281
HphI	GGTGA	2 cut(s)	247, 322
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	28, 158
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 78, 249
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	2 cut(s)	18, 105
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	230
MluCI	AATT	2 cut(s)	43, 317
MmeI	TCCRAC	2 cut(s)	102, 187
MnlI	CCTC	6 cut(s)	62, 120, 127, 216, 265, 342
MspI	CCGG	3 cut(s)	66, 102, 281
MspR9I	CCNGG	3 cut(s)	103, 254, 259
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	2 cut(s)	254, 259
MwoI	GCNNNNNNNGC	3 cut(s)	10, 78, 249
NciI	CCSGG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	76, 279
PaqCI	CACCTGC	1 cut(s)	333
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	252, 257
PspGI	CCWGG	2 cut(s)	252, 257
PspN4I	GGNNCC	2 cut(s)	76, 279
RsaI	GTAC	2 cut(s)	171, 248
RsaNI	GTAC	2 cut(s)	170, 247
Sau3AI	GATC	1 cut(s)	54
ScrFI	CCNGG	3 cut(s)	103, 254, 259
SetI	ASST	8 cut(s)	23, 39, 119, 131, 179, 248, 276, 347
Sse9I	AATT	2 cut(s)	43, 317
SsiI	CCGC	4 cut(s)	11, 72, 79, 185
StyD4I	CCNGG	3 cut(s)	101, 252, 257
TaqI	TCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	43, 317
TfiI	GAWTC	1 cut(s)	325
TscAI	CASTG	2 cut(s)	100, 312
TspRI	CASTG	2 cut(s)	100, 312
XapI	RAATTY	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.