Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Reverse (-)

57179956 .. 57180159

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG381200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGAAGGGCTACATAGCTTTCAGGCCGGGTGTGTGGGGTTCTTTGCTGGAGATGTGGAGGAGAGGGAGTTTTGGGTGATGGGCGGGTACGACCAGGCCAGGACTATATCAGAGGTGGTGTCGGTGGACAAGTATTACCAGAATGCGGTGGTGATGGAATTGACGAATCGGAATAGTGATGGCAGGTGGAGGGAGACAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

67

Amino Acids

7.63

Weight (kDa)

4.57

Isoelectric Point (pI)

23.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	174
Acc36I	ACCTGC	1 cut(s)	174
AciI	CCGC	2 cut(s)	84, 146
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	93, 98
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	188
AoxI	GGCC	2 cut(s)	24, 96
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	88, 163
BccI	CCATC	3 cut(s)	73, 148, 173
BciT130I	CCWGG	2 cut(s)	95, 100
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	174
Bme1390I	CCNGG	3 cut(s)	28, 95, 100
BmrFI	CCNGG	3 cut(s)	28, 95, 100
BpmI	CTGGAG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
BseBI	CCWGG	2 cut(s)	95, 100
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	26, 98
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	26, 98
BspACI	CCGC	2 cut(s)	84, 146
BspANI	GGCC	2 cut(s)	26, 98
BspMI	ACCTGC	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	95, 100
BstMAI	GTCTC	1 cut(s)	188
BstNI	CCWGG	2 cut(s)	95, 100
BstSCI	CCNGG	3 cut(s)	26, 93, 98
BsuRI	GGCC	2 cut(s)	26, 98
BveI	ACCTGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	88
CviJI	RGCY	4 cut(s)	10, 18, 26, 98
CviKI_1	RGCY	4 cut(s)	10, 18, 26, 98
CviQI	GTAC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	93, 98
FaiI	YATR	2 cut(s)	15, 107
FauI	CCCGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	26, 98
HapII	CCGG	1 cut(s)	27
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	88, 163
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	112, 171
Hpy8I	GTNNAC	1 cut(s)	127
MluCI	AATT	1 cut(s)	158
MnlI	CCTC	4 cut(s)	52, 57, 106, 183
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	3 cut(s)	28, 95, 100
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	2 cut(s)	95, 100
NciI	CCSGG	1 cut(s)	28
PaqCI	CACCTGC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	93, 98
PspGI	CCWGG	2 cut(s)	93, 98
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
ScrFI	CCNGG	3 cut(s)	28, 95, 100
SetI	ASST	4 cut(s)	20, 117, 188, 202
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	2 cut(s)	84, 146
StyD4I	CCNGG	3 cut(s)	26, 93, 98
TasI	AATT	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.