Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Forward (+)

32050502 .. 32050991

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0199400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGGCCTGAAATATATTACTATCCTCAAGGAACTAAGCATCAACTATGTACAGTGAACTCTGCCATAGACTTGTTGAAAGAGGAGAGGATTTTGAAAAGATCAAACATGTGCCTTCTGTCTTTTTCACAAATATTCAAACCAAATAACAAAGCTCGCCCTTCTGGTATTCGAAAGGCTGCAGCGAAGGAACAACAAGTTTCGTTTGATCTCAGCTCCAAGGTGTTGTCTCTCAGCGCAGACATGAGTTACAGAATGGTGTTTGGGAAGAAGTATATGGATGAGGAGTTTAACGAGAGGGTTTTCAATAGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

105

Amino Acids

12.11

Weight (kDa)

9.33

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	79, 97, 139, 307
AluBI	AGCT	2 cut(s)	155, 216
AluI	AGCT	2 cut(s)	155, 216
Alw26I	GTCTC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	2 cut(s)	179, 182
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	5
AsuII	TTCGAA	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	166, 194
BcoDI	GTCTC	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	180, 183
BlsI	GCNGC	2 cut(s)	181, 184
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	49
Bpu14I	TTCGAA	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	226, 247
BseRI	GAGGAG	2 cut(s)	98, 299
BseXI	GCAGC	2 cut(s)	166, 194
BshFI	GGCC	1 cut(s)	7
BsmAI	GTCTC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	7
Bsp119I	TTCGAA	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	101, 208
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	2 cut(s)	225, 246
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	172
BsrGI	TGTACA	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	101, 208
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	36, 212, 233
BstF5I	GGATG	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	2 cut(s)	104, 211
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	2 cut(s)	101, 208
BstNSI	RCATGY	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	166, 194
BsuRI	GGCC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	2 cut(s)	109, 244
CviJI	RGCY	4 cut(s)	7, 155, 179, 216
CviKI_1	RGCY	4 cut(s)	7, 155, 179, 216
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	3 cut(s)	36, 212, 233
DpnI	GATC	2 cut(s)	103, 210
DpnII	GATC	2 cut(s)	101, 208
Eco130I	CCWWGG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	112, 247
FaiI	YATR	7 cut(s)	16, 49, 68, 110, 245, 276, 278
FatI	CATG	2 cut(s)	108, 243
Fnu4HI	GCNGC	2 cut(s)	180, 183
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	180, 183
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	2 cut(s)	180, 183
HaeIII	GGCC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	112, 247
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	125, 171, 181
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	182
HpyF3I	CTNAG	3 cut(s)	36, 212, 233
Hsp92II	CATG	2 cut(s)	112, 247
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	101, 208
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	2 cut(s)	21, 150
Lsp1109I	GCAGC	2 cut(s)	166, 194
LweI	GCATC	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	103, 210
MboI	GATC	2 cut(s)	101, 208
MboII	GAAGA	1 cut(s)	280
MnlI	CCTC	5 cut(s)	36, 76, 81, 277, 291
MseI	TTAA	1 cut(s)	291
NdeII	GATC	2 cut(s)	101, 208
NlaIII	CATG	2 cut(s)	112, 247
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	172
PciI	ACATGT	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	181, 184
PscI	ACATGT	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	180, 183
Sau3AI	GATC	2 cut(s)	101, 208
Sau96I	GGNCC	1 cut(s)	5
SetI	ASST	3 cut(s)	157, 218, 225
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	180
SfuI	TTCGAA	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SspI	AATATT	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	172
TatI	WGTACW	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	2 cut(s)	179, 182
TspRI	CASTG	1 cut(s)	60
XceI	RCATGY	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.