Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Forward (+)

27719353 .. 27720404

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG294900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCCTGTAACCCCCACGTCCACGACCTCTGCAACTTTACCTCCGTCGTGATCGGGCCCCACCTCTATGTTCTCGGCGGCTCTCTCTTCGACACGCTCTCATTCCCGATCGACCGCCCCACGCCGTCGTTGGCGATGTTCTGGTTTGACTTCACCACAGCCGCATGGGAGTACCGCGCTCCAATGCTAACTCCGCGCGGGAGCTTCGCGTGTGCGAAAGTTCCGGATTCTGACCATATCATCGTCGCCGGAGGCAGTTCCCGCCACATCATGTTCAGCGCCACCGGGAGCAGGATGACCTCGGTGGAGAGGTATGATATATGTAGAGACGAGTGGGTGGCCATGGAAGGGCTGCCGAGCTTTCGGGTCGGGTGTGTGGGGTTCTTTGCTGGAGATGTGGAGGAGAGGGAGTTTTGGGTGATGGGCGGGTACGGCCAGGCCAGGACTATATCAGAGGTGGTGCCGGCGGACGAGGATTACCGGAATGCGGTGGTGATGGAATTGACGAATCGGAATGGTGGTGGCAGGTGGAGGGAGACTGGTGATATGTGGGAAGGAGGGGAGAGAATGAGGCTTGGGAAAATTGTGGTGGTTGATAATGAGGTTGATCCTGCACAACCTGTTCAAGACATGAAACTTAAACTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

216

Amino Acids

24.13

Weight (kDa)

5.01

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	516
Acc36I	ACCTGC	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	460
AccII	CGCG	4 cut(s)	177, 196, 198, 209
AccIII	TCCGGA	1 cut(s)	223
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	2 cut(s)	339, 433
AfaI	GTAC	2 cut(s)	173, 431
AfiI	CCNNNNNNNGG	3 cut(s)	291, 348, 487
AgsI	TTSAA	1 cut(s)	626
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	435, 440
AluBI	AGCT	2 cut(s)	204, 360
AluI	AGCT	2 cut(s)	204, 360
Alw26I	GTCTC	2 cut(s)	321, 530
AlwI	GGATC	1 cut(s)	602
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	4 cut(s)	56, 339, 433, 438
ApaI	GGGCCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	352
AspLEI	GCGC	3 cut(s)	179, 198, 281
AspS9I	GGNCC	2 cut(s)	56, 57
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	4 cut(s)	145, 430, 505, 554
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	2 cut(s)	415, 490
BceAI	ACGGC	2 cut(s)	109, 448
BciT130I	CCWGG	2 cut(s)	437, 442
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	321, 530
BfoI	RGCGCY	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	516
BisI	GCNGC	3 cut(s)	79, 162, 353
BlsI	GCNGC	3 cut(s)	80, 163, 354
Bme1390I	CCNGG	3 cut(s)	286, 437, 442
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	56, 57
BmiI	GGNNCC	3 cut(s)	58, 59, 462
BmrFI	CCNGG	3 cut(s)	286, 437, 442
BpmI	CTGGAG	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	300, 342
BsaWI	WCCGGW	2 cut(s)	223, 480
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 395, 425
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 348, 487
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	544
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	2 cut(s)	437, 442
BseDI	CCNNGG	2 cut(s)	300, 342
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	291, 348, 487
BseNI	ACTGG	1 cut(s)	544
BseRI	GAGGAG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	339
BsgI	GTGCAG	1 cut(s)	597
Bsh1236I	CGCG	4 cut(s)	177, 196, 198, 209
Bsh1285I	CGRYCG	2 cut(s)	111, 115
BshFI	GGCC	4 cut(s)	58, 341, 435, 440
BshNI	GGYRCC	1 cut(s)	460
BsiEI	CGRYCG	2 cut(s)	111, 115
BsiSI	CCGG	5 cut(s)	224, 249, 285, 464, 481
BslI	CCNNNNNNNGG	3 cut(s)	291, 348, 487
BsmAI	GTCTC	2 cut(s)	321, 530
BsmBI	CGTCTC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	4 cut(s)	58, 341, 435, 440
Bsp120I	GGGCCC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	51, 108, 607
Bsp19I	CCATGG	1 cut(s)	342
BspANI	GGCC	4 cut(s)	58, 341, 435, 440
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	4 cut(s)	177, 196, 198, 209
BspLI	GGNNCC	3 cut(s)	58, 59, 462
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	544
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	300, 342
BssMI	GATC	3 cut(s)	51, 108, 607
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	437, 442
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	465
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	4 cut(s)	177, 196, 198, 209
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	3 cut(s)	179, 198, 281
BstKTI	GATC	3 cut(s)	54, 111, 610
BstMAI	GTCTC	2 cut(s)	321, 530
BstMBI	GATC	3 cut(s)	51, 108, 607
BstMCI	CGRYCG	2 cut(s)	111, 115
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 261, 432
BstNI	CCWGG	2 cut(s)	437, 442
BstSCI	CCNGG	3 cut(s)	284, 435, 440
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	4 cut(s)	177, 196, 198, 209
BstV1I	GCAGC	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	58, 341, 435, 440
BtgI	CCRYGG	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	149
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	465
CfoI	GCGC	3 cut(s)	179, 198, 281
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	56, 57
Csp6I	GTAC	2 cut(s)	172, 430
CviAII	CATG	4 cut(s)	165, 271, 343, 631
CviQI	GTAC	2 cut(s)	172, 430
DpnI	GATC	3 cut(s)	53, 110, 609
DpnII	GATC	3 cut(s)	51, 108, 607
EaeI	YGGCCR	2 cut(s)	339, 433
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	435, 440
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	4 cut(s)	168, 274, 346, 634
FatI	CATG	4 cut(s)	164, 270, 342, 630
FauI	CCCGC	3 cut(s)	191, 269, 419
Fnu4HI	GCNGC	3 cut(s)	79, 162, 353
FokI	GGATG	1 cut(s)	307
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	3 cut(s)	79, 162, 353
GlaI	GCGC	3 cut(s)	178, 197, 280
GluI	GCNGC	3 cut(s)	79, 162, 353
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	4 cut(s)	58, 341, 435, 440
HapII	CCGG	5 cut(s)	224, 249, 285, 464, 481
HhaI	GCGC	3 cut(s)	179, 198, 281
Hin1II	CATG	4 cut(s)	168, 274, 346, 634
Hin6I	GCGC	3 cut(s)	177, 196, 279
HinP1I	GCGC	3 cut(s)	177, 196, 279
HinfI	GANTC	2 cut(s)	227, 508
HpaII	CCGG	5 cut(s)	224, 249, 285, 464, 481
HphI	GGTGA	4 cut(s)	145, 430, 505, 554
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	232, 454, 513
Hpy188III	TCNNGA	4 cut(s)	49, 106, 224, 626
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	3 cut(s)	50, 130, 248
HpyAV	CCTTC	2 cut(s)	341, 548
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	33, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 261, 432
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	168, 274, 346, 634
HspAI	GCGC	3 cut(s)	177, 196, 279
Kpn2I	TCCGGA	1 cut(s)	223
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
Kzo9I	GATC	3 cut(s)	51, 108, 607
LmnI	GCTCC	3 cut(s)	184, 201, 288
Lsp1109I	GCAGC	1 cut(s)	339
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	53, 110, 609
MboI	GATC	3 cut(s)	51, 108, 607
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	3 cut(s)	500, 582, 645
MluNI	TGGCCA	1 cut(s)	341
Mox20I	TGGCCA	1 cut(s)	341
MroI	TCCGGA	1 cut(s)	223
MroNI	GCCGGC	1 cut(s)	463
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	2 cut(s)	639, 649
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	5 cut(s)	224, 249, 285, 464, 481
MspR9I	CCNGG	3 cut(s)	286, 437, 442
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	2 cut(s)	437, 442
MvnI	CGCG	4 cut(s)	177, 196, 198, 209
MwoI	GCNNNNNNNGC	3 cut(s)	193, 261, 432
NaeI	GCCGGC	1 cut(s)	465
NciI	CCSGG	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	3 cut(s)	51, 108, 607
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	4 cut(s)	168, 274, 346, 634
NlaIV	GGNNCC	3 cut(s)	58, 59, 462
NmeAIII	GCCGAG	2 cut(s)	54, 381
PaqCI	CACCTGC	1 cut(s)	516
PctI	GAATGC	1 cut(s)	490
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	227, 508
PkrI	GCNGC	3 cut(s)	80, 163, 354
Ple19I	CGATCG	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	435, 440
PspGI	CCWGG	2 cut(s)	435, 440
PspN4I	GGNNCC	3 cut(s)	58, 59, 462
PspOMI	GGGCCC	1 cut(s)	56
PspPI	GGNCC	2 cut(s)	56, 57
PvuI	CGATCG	1 cut(s)	111
RsaI	GTAC	2 cut(s)	173, 431
RsaNI	GTAC	2 cut(s)	172, 430
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	639, 649
SatI	GCNGC	3 cut(s)	79, 162, 353
Sau3AI	GATC	3 cut(s)	51, 108, 607
Sau96I	GGNCC	2 cut(s)	56, 57
ScrFI	CCNGG	3 cut(s)	286, 437, 442
SduI	GDGCHC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	3 cut(s)	500, 582, 645
StyD4I	CCNGG	3 cut(s)	284, 435, 440
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	90, 111
TasI	AATT	3 cut(s)	500, 582, 645
TauI	GCSGC	2 cut(s)	81, 164
TfiI	GAWTC	2 cut(s)	227, 508
Tru1I	TTAA	2 cut(s)	639, 649
Tru9I	TTAA	2 cut(s)	639, 649
TseI	GCWGC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	647
TspGWI	ACGGA	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.