Rh4DG079800

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002250
Physical Location & Seq
Forward (+)
11830705 .. 11831241
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG079800.1

Sequence Viewer

Length: 537 bp
ATGCCCTGTAACCCCCACGTCTACGGCCTCTGCAACTTTACCTCCGTCACGATCGGGCCCCACCTCAGCGGCTCTCTCTTCGACACGCGCTCATTCCCTATCGACTGCCCCACGTCGTCGTCGGCGGTGTTCCCGTTTGACTTCACCACCGTTACCTGGGAGTACCGCGCTCTAATGTTAACCCCGCGCGGGAGCTTTGTGTGTGCGAAGGTTCCAGATTCTGACCAGATCATCGTCACTAGAGGCGGTTCCCGCCACACCATGTTCAGCGCCGCCGGGAGCAGGAGGACCTCAGTGGAGAGGTATGATATATGTAGAGACGAGTGGGTGGCCATGGAAGAGCTGCCGAGCTTTCGGGCCGGGTGTGTGGGGTTCTTTGCTGGAGATGTGGAGGAGAGGGAATTTTGGGTGATGGGCGGGTACAGCCAGGCCAGGACTATATCGGAGGTGGTACCGGTGGACGAGTATTACCGGAATGCGGTGGTGATGGAATTGACGAATCGGAATAGTGATGGCAAGAGGAGGGAGACAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_1

Protein Analysis

178

Amino Acids

19.95

Weight (kDa)

5.4

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 451
AccB1I GGYRCC 1 cut(s) 451
AccI GTMKAC 1 cut(s) 21
AccII CGCG 4 cut(s) 88, 168, 187, 189
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 1 cut(s) 401
AfaI GTAC 3 cut(s) 164, 422, 453
AfiI CCNNNNNNNGG 4 cut(s) 156, 189, 282, 478
AgeI ACCGGT 1 cut(s) 454
AjiI CACGTC 2 cut(s) 19, 114
AjnI CCWGG 3 cut(s) 155, 426, 431
AluBI AGCT 3 cut(s) 195, 343, 351
AluI AGCT 3 cut(s) 195, 343, 351
Alw26I GTCTC 2 cut(s) 312, 521
AlwNI CAGNNNCTG 1 cut(s) 221
AoxI GGCC 5 cut(s) 25, 56, 330, 357, 429
ApaI GGGCCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 1 cut(s) 401
AsiGI ACCGGT 1 cut(s) 454
Asp718I GGTACC 1 cut(s) 451
AspLEI GCGC 4 cut(s) 90, 170, 189, 272
AspS9I GGNCC 4 cut(s) 56, 57, 288, 357
AsuC2I CCSGG 2 cut(s) 277, 361
AsuHPI GGTGA 3 cut(s) 136, 421, 496
AvaII GGWCC 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 60
BalI TGGCCA 1 cut(s) 332
BanI GGYRCC 1 cut(s) 451
BanII GRGCYC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 330
BccI CCATC 3 cut(s) 406, 481, 506
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 3 cut(s) 157, 428, 433
BcnI CCSGG 2 cut(s) 277, 361
BcoDI GTCTC 2 cut(s) 312, 521
BfaI CTAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 273
BisI GCNGC 3 cut(s) 70, 273, 344
BlsI GCNGC 3 cut(s) 71, 274, 345
Bme1390I CCNGG 5 cut(s) 157, 277, 361, 428, 433
Bme18I GGWCC 1 cut(s) 288
BmgBI CACGTC 2 cut(s) 19, 114
BmgT120I GGNCC 4 cut(s) 56, 57, 288, 357
BmiI GGNNCC 5 cut(s) 58, 59, 213, 250, 453
BmrFI CCNGG 5 cut(s) 157, 277, 361, 428, 433
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 65
BpuMI CCSGG 2 cut(s) 277, 361
BsaJI CCNNGG 2 cut(s) 156, 333
BsaWI WCCGGW 2 cut(s) 454, 471
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 189, 282, 478
Bse118I RCCGGY 1 cut(s) 454
BseBI CCWGG 3 cut(s) 157, 428, 433
BseDI CCNNGG 2 cut(s) 156, 333
BseLI CCNNNNNNNGG 4 cut(s) 156, 189, 282, 478
BseMII CTCAG 2 cut(s) 79, 306
BseRI GAGGAG 2 cut(s) 407, 535
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 1 cut(s) 330
Bsh1236I CGCG 4 cut(s) 88, 168, 187, 189
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 5 cut(s) 27, 58, 332, 359, 431
BshNI GGYRCC 1 cut(s) 451
BshTI ACCGGT 1 cut(s) 454
BsiEI CGRYCG 1 cut(s) 54
BsiSI CCGG 4 cut(s) 276, 360, 455, 472
BslI CCNNNNNNNGG 4 cut(s) 156, 189, 282, 478
BsmAI GTCTC 2 cut(s) 312, 521
BsmBI CGTCTC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 5 cut(s) 27, 58, 332, 359, 431
Bsp120I GGGCCC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 51, 228
Bsp19I CCATGG 1 cut(s) 333
BspANI GGCC 5 cut(s) 27, 58, 332, 359, 431
BspCNI CTCAG 2 cut(s) 78, 305
BspFNI CGCG 4 cut(s) 88, 168, 187, 189
BspLI GGNNCC 5 cut(s) 58, 59, 213, 250, 453
BspQI GCTCTTC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 156, 333
BssMI GATC 2 cut(s) 51, 228
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 3 cut(s) 157, 428, 433
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 2 cut(s) 83, 333
BstDEI CTNAG 2 cut(s) 65, 292
BstDSI CCRYGG 1 cut(s) 333
BstFNI CGCG 4 cut(s) 88, 168, 187, 189
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 4 cut(s) 90, 170, 189, 272
BstKTI GATC 2 cut(s) 54, 231
BstMAI GTCTC 2 cut(s) 312, 521
BstMBI GATC 2 cut(s) 51, 228
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 252, 423
BstNI CCWGG 3 cut(s) 157, 428, 433
BstSCI CCNGG 5 cut(s) 155, 275, 359, 426, 431
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 4 cut(s) 88, 168, 187, 189
BstV1I GCAGC 1 cut(s) 330
BsuRI GGCC 5 cut(s) 27, 58, 332, 359, 431
BtgI CCRYGG 1 cut(s) 333
BtrI CACGTC 2 cut(s) 19, 114
BtsIMutI CAGTG 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 221
CfoI GCGC 4 cut(s) 90, 170, 189, 272
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 4 cut(s) 56, 57, 288, 357
Csp6I GTAC 3 cut(s) 163, 421, 452
CspAI ACCGGT 1 cut(s) 454
CviAII CATG 2 cut(s) 262, 334
CviQI GTAC 3 cut(s) 163, 421, 452
DdeI CTNAG 2 cut(s) 65, 292
DpnI GATC 2 cut(s) 53, 230
DpnII GATC 2 cut(s) 51, 228
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 2 cut(s) 83, 333
EarI CTCTTC 2 cut(s) 83, 333
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 288
EcoO109I RGGNCCY 2 cut(s) 57, 288
EcoRII CCWGG 3 cut(s) 155, 426, 431
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 2 cut(s) 265, 337
FaiI YATR 6 cut(s) 263, 306, 311, 313, 335, 440
FatI CATG 2 cut(s) 261, 333
FauI CCCGC 4 cut(s) 182, 192, 260, 410
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 70, 273, 344
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 70, 273, 344
FspBI CTAG 1 cut(s) 240
GlaI GCGC 4 cut(s) 89, 169, 188, 271
GluI GCNGC 3 cut(s) 70, 273, 344
GsuI CTGGAG 1 cut(s) 402
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 5 cut(s) 27, 58, 332, 359, 431
HapII CCGG 4 cut(s) 276, 360, 455, 472
HhaI GCGC 4 cut(s) 90, 170, 189, 272
Hin1II CATG 2 cut(s) 265, 337
Hin6I GCGC 4 cut(s) 88, 168, 187, 270
HinP1I GCGC 4 cut(s) 88, 168, 187, 270
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 2 cut(s) 218, 499
HpaI GTTAAC 1 cut(s) 180
HpaII CCGG 4 cut(s) 276, 360, 455, 472
HphI GGTGA 3 cut(s) 136, 421, 496
Hpy166II GTNNAC 3 cut(s) 22, 180, 460
Hpy188I TCNGA 3 cut(s) 223, 445, 504
Hpy188III TCNNGA 2 cut(s) 49, 215
Hpy8I GTNNAC 3 cut(s) 22, 180, 460
Hpy99I CGWCG 3 cut(s) 118, 121, 124
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 2 cut(s) 18, 113
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 423
HpyF3I CTNAG 2 cut(s) 65, 292
HpySE526I ACGT 2 cut(s) 18, 113
Hsp92II CATG 2 cut(s) 265, 337
HspAI GCGC 4 cut(s) 88, 168, 187, 270
KpnI GGTACC 1 cut(s) 455
KspAI GTTAAC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 51, 228
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 2 cut(s) 192, 279
Lsp1109I GCAGC 1 cut(s) 330
MaeI CTAG 1 cut(s) 240
MaeII ACGT 2 cut(s) 18, 113
MaeIII GTNAC 4 cut(s) 8, 46, 151, 235
MalI GATC 2 cut(s) 53, 230
MboI GATC 2 cut(s) 51, 228
MboII GAAGA 2 cut(s) 70, 350
MhlI GDGCHC 1 cut(s) 60
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 2 cut(s) 401, 491
MluNI TGGCCA 1 cut(s) 332
Mox20I TGGCCA 1 cut(s) 332
MscI TGGCCA 1 cut(s) 332
MseI TTAA 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 4 cut(s) 276, 360, 455, 472
MspR9I CCNGG 5 cut(s) 157, 277, 361, 428, 433
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 3 cut(s) 157, 428, 433
MvnI CGCG 4 cut(s) 88, 168, 187, 189
MwoI GCNNNNNNNGC 2 cut(s) 252, 423
NciI CCSGG 2 cut(s) 277, 361
NcoI CCATGG 1 cut(s) 333
NdeII GATC 2 cut(s) 51, 228
NlaIII CATG 2 cut(s) 265, 337
NlaIV GGNNCC 5 cut(s) 58, 59, 213, 250, 453
NmeAIII GCCGAG 1 cut(s) 372
NmuCI GTSAC 2 cut(s) 46, 235
PciSI GCTCTTC 1 cut(s) 333
PctI GAATGC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 218, 499
PinAI ACCGGT 1 cut(s) 454
PkrI GCNGC 3 cut(s) 71, 274, 345
Ple19I CGATCG 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 155, 426, 431
PspGI CCWGG 3 cut(s) 155, 426, 431
PspN4I GGNNCC 5 cut(s) 58, 59, 213, 250, 453
PspOMI GGGCCC 1 cut(s) 56
PspPI GGNCC 4 cut(s) 56, 57, 288, 357
PspPPI RGGWCCY 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 221
PvuI CGATCG 1 cut(s) 54
RsaI GTAC 3 cut(s) 164, 422, 453
RsaNI GTAC 3 cut(s) 163, 421, 452
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 3 cut(s) 70, 273, 344
Sau3AI GATC 2 cut(s) 51, 228
Sau96I GGNCC 4 cut(s) 56, 57, 288, 357
ScrFI CCNGG 5 cut(s) 157, 277, 361, 428, 433
SduI GDGCHC 1 cut(s) 60
SinI GGWCC 1 cut(s) 288
Sse9I AATT 2 cut(s) 401, 491
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 5 cut(s) 155, 275, 359, 426, 431
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 2 cut(s) 21, 116
TaqI TCGA 2 cut(s) 81, 102
TasI AATT 2 cut(s) 401, 491
TauI GCSGC 2 cut(s) 72, 275
TfiI GAWTC 2 cut(s) 218, 499
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 2 cut(s) 46, 235
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 2 cut(s) 46, 235
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.