RLG00000012347

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
17711008 .. 17714027
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012347

Sequence Viewer

Length: 1239 bp
ATGGCCTCCCAATCTTCACCTTCATCTCCTTCTTCTTCTTCTTCCTTATCATCATCATATCCGCCTCTAATCCCCGGCCTCCCAAACGACGTCGCTTCCTTAATCCTCTCCTTCATCCCCTTCTCCCACCGCGCCCGCCTCAAACGCACCTGCAAATCATGGCGCCTCTTCCTCTCCTCCAAAACCCTCTTCTCTTCCCGCCAAACCCACCGCAGCCTCTCCCACCTCATCTGCATCTTCCCCGAGGACCCCGCCGTCACCGGACCTTACCTCTTCGACCCCCGCCACCTCGCCTGGTGCCCCCTCCCCCCCATGCCATGTAACCCCTACGTCTACGGCCTCTGCAACTTCACCTCCGTCGCGATCGGGCCCCACCTCTACGTCCTCGGCGGCTCTCTCTTCGACACGCGCTCCTTCCCGATCGACCGCCCCACGCCGTCGTCGGCGGTGTTCCGGTTTGACTTCACCACCGCCGCGTGGGAGTACCGCGCTCCGATGCTCACCCCGCGCGGGAGCTTCGCGTGTGCGAAGGTTCCCGATTCCGACCAGATCATCGTCGCCGGAGGCGGCTCCCGCCACACCATGTTCAGCGCCGCCGGGAGCAGGATGAGGTCGGTGGAGAGGTATGATATATGTAGAGACGAGTGGGTGGCCATGGAAGGGCTGCCGAGCTTTCGGGCCGGGTGTGTGGGGTTCTTTGCTGGAGATGAGGAGGAGAGGGAGTTTTGGGTGATGGGCGGGTACGGCCAGACCAGGACTATATCGGAGGTGGTGCCGGTGGACGAGTATTACCGGAATGCGGTGGTGATGGAATTGACGAGCAGGAATGGCGGGGGCAGGTGGAGGGAGACTGGTGATATGTGGGAAGGAGGGGAGAGAATGAGGCTTGGGAAAATTGTGGTGGTTGATAATGAGGTTGATCCTGCACAACCTGGTGTGTTCATGCTTGATGGGAATGATATATTCAGGTATGACCTGGCATCAAATCACTGGAGTTTGGAGTCACGTATACCAAGGAAGCCTCCTTGCAACTCATCATTTGCATTCGTTGTATTGGAGGGAGAGTTGTATGTTATAACCTTCTGGAAGACAGTTGAGCGATTGGATAAGAGGGCAGGGAGGCTTTACATCCAAATCTACCATCCTCAACAGAGGACATGGAGATCTCTCCTTACCAAGTCACCTTTGCGTTATGACTTGGATTTCAATGCAGCAGTGATGAGCACCATTCACTTGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

413

Amino Acids

46.42

Weight (kDa)

8.33

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 25 - 63 3e-06 F-box-like
F-box PF00646 25 - 63 3.2e-06 F-box domain
Kelch_1 PF01344 115 - 166 9.7e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1076
AarI CACCTGC 2 cut(s) 158, 828
AasI GACNNNNNNGTC 1 cut(s) 254
AatII GACGTC 1 cut(s) 93
Acc36I ACCTGC 2 cut(s) 158, 828
AccB1I GGYRCC 3 cut(s) 162, 297, 772
AccI GTMKAC 2 cut(s) 333, 1009
AccII CGCG 8 cut(s) 132, 362, 409, 476, 489, 508, 510, 521
AclWI GGATC 1 cut(s) 914
AcoI YGGCCR 2 cut(s) 651, 745
AcyI GRCGYC 2 cut(s) 90, 163
AfaI GTAC 2 cut(s) 485, 743
AfiI CCNNNNNNNGG 5 cut(s) 477, 510, 603, 660, 799
AgsI TTSAA 1 cut(s) 1207
AjnI CCWGG 4 cut(s) 293, 752, 931, 975
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 516, 672
AluI AGCT 2 cut(s) 516, 672
Alw21I GWGCWC 1 cut(s) 1226
Alw26I GTCTC 2 cut(s) 633, 842
AlwI GGATC 1 cut(s) 914
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 7 cut(s) 3, 76, 337, 368, 651, 678, 745
ApaI GGGCCC 1 cut(s) 372
ApeKI GCWGC 3 cut(s) 213, 664, 1211
AspLEI GCGC 6 cut(s) 134, 165, 411, 491, 510, 593
AspS9I GGNCC 5 cut(s) 247, 263, 368, 369, 678
AsuC2I CCSGG 3 cut(s) 75, 598, 682
AsuHPI GGTGA 9 cut(s) 9, 250, 343, 457, 493, 742, 817, 866, 1173
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 2 cut(s) 247, 263
BaeGI GKGCMC 2 cut(s) 302, 372
BalI TGGCCA 1 cut(s) 653
BanI GGYRCC 3 cut(s) 162, 297, 772
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 1094
Bbv12I GWGCWC 1 cut(s) 1226
BbvI GCAGC 3 cut(s) 225, 651, 1223
BccI CCATC 4 cut(s) 727, 802, 944, 1149
BceAI ACGGC 4 cut(s) 239, 352, 421, 760
BciT130I CCWGG 4 cut(s) 295, 754, 933, 977
BcnI CCSGG 3 cut(s) 75, 598, 682
BcoDI GTCTC 2 cut(s) 633, 842
BfoI RGCGCY 2 cut(s) 166, 594
BfuAI ACCTGC 2 cut(s) 158, 828
BglII AGATCT 1 cut(s) 1163
BisI GCNGC 7 cut(s) 214, 391, 474, 568, 594, 665, 1212
BlsI GCNGC 7 cut(s) 215, 392, 475, 569, 595, 666, 1213
Bme1390I CCNGG 7 cut(s) 75, 295, 598, 682, 754, 933, 977
Bme18I GGWCC 2 cut(s) 247, 263
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 5 cut(s) 247, 263, 368, 369, 678
BmiI GGNNCC 8 cut(s) 164, 249, 299, 370, 371, 534, 571, 774
BmrFI CCNGG 7 cut(s) 75, 295, 598, 682, 754, 933, 977
BmsI GCATC 3 cut(s) 243, 486, 989
BpiI GAAGAC 1 cut(s) 1094
BpmI CTGGAG 2 cut(s) 723, 1012
BpuMI CCSGG 3 cut(s) 75, 598, 682
BsaAI YACGTR 1 cut(s) 1007
BsaHI GRCGYC 2 cut(s) 90, 163
BsaJI CCNNGG 5 cut(s) 73, 243, 385, 654, 1013
BsaWI WCCGGW 3 cut(s) 260, 453, 792
BsaXI ACNNNNNCTCC 8 cut(s) 338, 368, 395, 425, 707, 737, 1049, 1079
Bsc4I CCNNNNNNNGG 5 cut(s) 477, 510, 603, 660, 799
Bse118I RCCGGY 1 cut(s) 775
Bse1I ACTGG 2 cut(s) 856, 995
BseBI CCWGG 4 cut(s) 295, 754, 933, 977
BseDI CCNNGG 5 cut(s) 73, 243, 385, 654, 1013
BseGI GGATG 4 cut(s) 114, 612, 1128, 1141
BseLI CCNNNNNNNGG 5 cut(s) 477, 510, 603, 660, 799
BseNI ACTGG 2 cut(s) 856, 995
BseRI GAGGAG 3 cut(s) 166, 725, 728
BseSI GKGCMC 2 cut(s) 302, 372
BseXI GCAGC 3 cut(s) 225, 651, 1223
BsgI GTGCAG 1 cut(s) 909
Bsh1236I CGCG 8 cut(s) 132, 362, 409, 476, 489, 508, 510, 521
Bsh1285I CGRYCG 3 cut(s) 366, 423, 427
BshFI GGCC 7 cut(s) 5, 78, 339, 370, 653, 680, 747
BshNI GGYRCC 3 cut(s) 162, 297, 772
BsiEI CGRYCG 3 cut(s) 366, 423, 427
BsiHKAI GWGCWC 1 cut(s) 1226
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 8 cut(s) 75, 261, 454, 561, 597, 681, 776, 793
BslI CCNNNNNNNGG 5 cut(s) 477, 510, 603, 660, 799
BsmAI GTCTC 2 cut(s) 633, 842
BsmBI CGTCTC 1 cut(s) 633
BsmI GAATGC 2 cut(s) 802, 1043
BsnI GGCC 7 cut(s) 5, 78, 339, 370, 653, 680, 747
BsoBI CYCGRG 1 cut(s) 242
Bsp120I GGGCCC 1 cut(s) 368
Bsp1286I GDGCHC 3 cut(s) 302, 372, 1226
Bsp143I GATC 5 cut(s) 363, 420, 549, 919, 1163
Bsp19I CCATGG 1 cut(s) 654
Bsp68I TCGCGA 1 cut(s) 362
BspANI GGCC 7 cut(s) 5, 78, 339, 370, 653, 680, 747
BspFNI CGCG 8 cut(s) 132, 362, 409, 476, 489, 508, 510, 521
BspLI GGNNCC 8 cut(s) 164, 249, 299, 370, 371, 534, 571, 774
BspMI ACCTGC 2 cut(s) 158, 828
BspPI GGATC 1 cut(s) 914
BspT107I GGYRCC 3 cut(s) 162, 297, 772
BsrFI RCCGGY 1 cut(s) 775
BsrI ACTGG 2 cut(s) 856, 995
BssAI RCCGGY 1 cut(s) 775
BssECI CCNNGG 5 cut(s) 73, 243, 385, 654, 1013
BssMI GATC 5 cut(s) 363, 420, 549, 919, 1163
BssNAI GTATAC 1 cut(s) 1010
BssNI GRCGYC 2 cut(s) 90, 163
BssT1I CCWWGG 2 cut(s) 654, 1013
Bst1107I GTATAC 1 cut(s) 1010
Bst2UI CCWGG 4 cut(s) 295, 754, 933, 977
Bst4CI ACNGT 1 cut(s) 1093
Bst6I CTCTTC 5 cut(s) 173, 194, 199, 278, 404
BstACI GRCGYC 2 cut(s) 90, 163
BstBAI YACGTR 1 cut(s) 1007
BstC8I GCNNGC 1 cut(s) 136
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 4 cut(s) 114, 612, 1128, 1141
BstFNI CGCG 8 cut(s) 132, 362, 409, 476, 489, 508, 510, 521
BstH2I RGCGCY 2 cut(s) 166, 594
BstHHI GCGC 6 cut(s) 134, 165, 411, 491, 510, 593
BstKTI GATC 5 cut(s) 366, 423, 552, 922, 1166
BstMAI GTCTC 2 cut(s) 633, 842
BstMBI GATC 5 cut(s) 363, 420, 549, 919, 1163
BstMCI CGRYCG 3 cut(s) 366, 423, 427
BstMWI GCNNNNNNNGC 5 cut(s) 144, 505, 573, 744, 828
BstNI CCWGG 4 cut(s) 295, 754, 933, 977
BstSCI CCNGG 7 cut(s) 73, 293, 596, 680, 752, 931, 975
BstSLI GKGCMC 2 cut(s) 302, 372
BstUI CGCG 8 cut(s) 132, 362, 409, 476, 489, 508, 510, 521
BstV1I GCAGC 3 cut(s) 225, 651, 1223
BstV2I GAAGAC 1 cut(s) 1094
BstX2I RGATCY 1 cut(s) 1163
BstYI RGATCY 1 cut(s) 1163
BstZ17I GTATAC 1 cut(s) 1010
BsuRI GGCC 7 cut(s) 5, 78, 339, 370, 653, 680, 747
BtgI CCRYGG 1 cut(s) 654
BtsCI GGATG 4 cut(s) 114, 612, 1128, 1141
BtsI GCAGTG 1 cut(s) 1221
BtsIMutI CAGTG 2 cut(s) 988, 1221
BtuMI TCGCGA 1 cut(s) 362
BveI ACCTGC 2 cut(s) 158, 828
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 6 cut(s) 134, 165, 411, 491, 510, 593
Cfr10I RCCGGY 1 cut(s) 775
Cfr13I GGNCC 5 cut(s) 247, 263, 368, 369, 678
CsiI ACCWGGT 1 cut(s) 931
Csp6I GTAC 2 cut(s) 484, 742
CviAII CATG 7 cut(s) 159, 313, 318, 583, 655, 943, 1158
CviQI GTAC 2 cut(s) 484, 742
DinI GGCGCC 1 cut(s) 164
DpnI GATC 5 cut(s) 365, 422, 551, 921, 1165
DpnII GATC 5 cut(s) 363, 420, 549, 919, 1163
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 2 cut(s) 651, 745
Eam1104I CTCTTC 5 cut(s) 173, 194, 199, 278, 404
EarI CTCTTC 5 cut(s) 173, 194, 199, 278, 404
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 654, 1013
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 247, 263
Eco88I CYCGRG 1 cut(s) 242
EcoO109I RGGNCCY 2 cut(s) 247, 369
EcoRII CCWGG 4 cut(s) 293, 752, 931, 975
EcoT14I CCWWGG 2 cut(s) 654, 1013
EcoT38I GRGCYC 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 164
EheI GGCGCC 1 cut(s) 164
ErhI CCWWGG 2 cut(s) 654, 1013
Esp3I CGTCTC 1 cut(s) 633
FaeI CATG 7 cut(s) 162, 316, 321, 586, 658, 946, 1161
FatI CATG 7 cut(s) 158, 312, 317, 582, 654, 942, 1157
FauI CCCGC 9 cut(s) 143, 206, 259, 290, 503, 513, 581, 731, 824
FblI GTMKAC 2 cut(s) 333, 1009
Fnu4HI GCNGC 7 cut(s) 214, 391, 474, 568, 594, 665, 1212
FokI GGATG 4 cut(s) 101, 619, 1115, 1128
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 7 cut(s) 214, 391, 474, 568, 594, 665, 1212
GlaI GCGC 6 cut(s) 133, 164, 410, 490, 509, 592
GluI GCNGC 7 cut(s) 214, 391, 474, 568, 594, 665, 1212
GsuI CTGGAG 2 cut(s) 723, 1012
HaeII RGCGCY 2 cut(s) 166, 594
HaeIII GGCC 7 cut(s) 5, 78, 339, 370, 653, 680, 747
HapII CCGG 8 cut(s) 75, 261, 454, 561, 597, 681, 776, 793
HhaI GCGC 6 cut(s) 134, 165, 411, 491, 510, 593
Hin1I GRCGYC 2 cut(s) 90, 163
Hin1II CATG 7 cut(s) 162, 316, 321, 586, 658, 946, 1161
Hin6I GCGC 6 cut(s) 132, 163, 409, 489, 508, 591
HinP1I GCGC 6 cut(s) 132, 163, 409, 489, 508, 591
HinfI GANTC 2 cut(s) 539, 1001
HpaII CCGG 8 cut(s) 75, 261, 454, 561, 597, 681, 776, 793
HphI GGTGA 9 cut(s) 9, 250, 343, 457, 493, 742, 817, 866, 1173
Hpy166II GTNNAC 3 cut(s) 334, 781, 1010
Hpy188I TCNGA 3 cut(s) 495, 544, 766
Hpy188III TCNNGA 4 cut(s) 361, 418, 536, 1084
Hpy8I GTNNAC 3 cut(s) 334, 781, 1010
Hpy99I CGWCG 6 cut(s) 92, 95, 362, 442, 445, 560
HpyAV CCTTC 9 cut(s) 30, 39, 121, 130, 424, 523, 653, 860, 1090
HpyCH4III ACNGT 1 cut(s) 1093
HpyCH4IV ACGT 4 cut(s) 90, 330, 381, 1006
HpyCH4V TGCA 7 cut(s) 153, 234, 345, 926, 1029, 1043, 1211
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 505, 573, 744, 828
HpySE526I ACGT 4 cut(s) 90, 330, 381, 1006
Hsp92I GRCGYC 2 cut(s) 90, 163
Hsp92II CATG 7 cut(s) 162, 316, 321, 586, 658, 946, 1161
HspAI GCGC 6 cut(s) 132, 163, 409, 489, 508, 591
KasI GGCGCC 1 cut(s) 162
Kzo9I GATC 5 cut(s) 363, 420, 549, 919, 1163
LmnI GCTCC 5 cut(s) 416, 496, 513, 575, 600
Lsp1109I GCAGC 3 cut(s) 225, 651, 1223
LweI GCATC 3 cut(s) 243, 486, 989
MabI ACCWGGT 1 cut(s) 931
MaeII ACGT 4 cut(s) 90, 330, 381, 1006
MaeIII GTNAC 4 cut(s) 256, 320, 1002, 1179
MalI GATC 5 cut(s) 365, 422, 551, 921, 1165
MboI GATC 5 cut(s) 363, 420, 549, 919, 1163
MflI RGATCY 1 cut(s) 1163
MhlI GDGCHC 3 cut(s) 302, 372, 1226
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 2 cut(s) 812, 894
MluNI TGGCCA 1 cut(s) 653
Mly113I GGCGCC 1 cut(s) 163
MlyI GAGTC 1 cut(s) 1010
MmeI TCCRAC 1 cut(s) 567
Mox20I TGGCCA 1 cut(s) 653
MscI TGGCCA 1 cut(s) 653
MseI TTAA 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 653
MspI CCGG 8 cut(s) 75, 261, 454, 561, 597, 681, 776, 793
MspR9I CCNGG 7 cut(s) 75, 295, 598, 682, 754, 933, 977
Mva1269I GAATGC 2 cut(s) 802, 1043
MvaI CCWGG 4 cut(s) 295, 754, 933, 977
MvnI CGCG 8 cut(s) 132, 362, 409, 476, 489, 508, 510, 521
MwoI GCNNNNNNNGC 5 cut(s) 144, 505, 573, 744, 828
NarI GGCGCC 1 cut(s) 163
NciI CCSGG 3 cut(s) 75, 598, 682
NcoI CCATGG 1 cut(s) 654
NdeII GATC 5 cut(s) 363, 420, 549, 919, 1163
NlaIII CATG 7 cut(s) 162, 316, 321, 586, 658, 946, 1161
NlaIV GGNNCC 8 cut(s) 164, 249, 299, 370, 371, 534, 571, 774
NmeAIII GCCGAG 2 cut(s) 366, 693
NmuCI GTSAC 3 cut(s) 256, 1002, 1179
NruI TCGCGA 1 cut(s) 362
PaqCI CACCTGC 2 cut(s) 158, 828
PctI GAATGC 2 cut(s) 802, 1043
PfeI GAWTC 1 cut(s) 539
PkrI GCNGC 7 cut(s) 215, 392, 475, 569, 595, 666, 1213
Ple19I CGATCG 2 cut(s) 366, 423
PleI GAGTC 1 cut(s) 1009
PluTI GGCGCC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 1009
Ppu21I YACGTR 1 cut(s) 1007
PpuMI RGGWCCY 1 cut(s) 247
PsiI TTATAA 1 cut(s) 1076
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 4 cut(s) 293, 752, 931, 975
PspGI CCWGG 4 cut(s) 293, 752, 931, 975
PspN4I GGNNCC 8 cut(s) 164, 249, 299, 370, 371, 534, 571, 774
PspOMI GGGCCC 1 cut(s) 368
PspPI GGNCC 5 cut(s) 247, 263, 368, 369, 678
PspPPI RGGWCCY 1 cut(s) 247
PsuI RGATCY 1 cut(s) 1163
PvuI CGATCG 2 cut(s) 366, 423
RruI TCGCGA 1 cut(s) 362
RsaI GTAC 2 cut(s) 485, 743
RsaNI GTAC 2 cut(s) 484, 742
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 7 cut(s) 214, 391, 474, 568, 594, 665, 1212
Sau3AI GATC 5 cut(s) 363, 420, 549, 919, 1163
Sau96I GGNCC 5 cut(s) 247, 263, 368, 369, 678
SchI GAGTC 1 cut(s) 1010
ScrFI CCNGG 7 cut(s) 75, 295, 598, 682, 754, 933, 977
SduI GDGCHC 3 cut(s) 302, 372, 1226
SexAI ACCWGGT 1 cut(s) 931
SfaNI GCATC 3 cut(s) 243, 486, 989
SfoI GGCGCC 1 cut(s) 164
SinI GGWCC 2 cut(s) 247, 263
Sse9I AATT 2 cut(s) 812, 894
SspDI GGCGCC 1 cut(s) 162
StyD4I CCNGG 7 cut(s) 73, 293, 596, 680, 752, 931, 975
StyI CCWWGG 2 cut(s) 654, 1013
TaaI ACNGT 1 cut(s) 1093
TaiI ACGT 4 cut(s) 93, 333, 384, 1009
TaqI TCGA 3 cut(s) 276, 402, 423
TasI AATT 2 cut(s) 812, 894
TauI GCSGC 4 cut(s) 393, 476, 570, 596
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 2 cut(s) 995, 1221
TseFI GTSAC 3 cut(s) 256, 1002, 1179
TseI GCWGC 3 cut(s) 213, 664, 1211
Tsp45I GTSAC 3 cut(s) 256, 1002, 1179
TspDTI ATGAA 3 cut(s) 12, 103, 931
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 2 cut(s) 995, 1221
VpaK11BI GGWCC 2 cut(s) 247, 263
XmiI GTMKAC 2 cut(s) 333, 1009
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.