Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Reverse (-)

64903069 .. 64906530

Gene Structure 3462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG409600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTAACTCCGCTTTGGAGCTTCGCATGTGCGAAAGTTTCGGATTCTGACCATATCATCGTCGCCGGAGGCAGTTCCCGCCACATCATGTTTAGCGCCACCGGGAGCAAGATGACTTCAGTGGAGAGGTATGATATATGTAGAGACAAGTGGGTGGCCATGGAAGGGCTGCTAAGCTTTCGGGGCGGGTGTGTGGTGTTCTTTGCTGGAGATGTGGAGGAGAGGGAGTTTTGGGTGATGGGCGGGTACGGCCAGGCCAGGACTATATCAGAGGTGGTGCCAGTGGATGAGGATTACCGGAATGTGGTGGTGATGGAATTGACGAATCGGAATGGTGGTGGCAGGTGGAGGGAGACTGGTGATATGTGGGAAGGAGGGGAGAGAATGAGGCTTGGGAAAATTGTGGTGGTTGATAATGAGGCTGATCCTCCACAACCTGATCACAACTACCTTTCTAAACTTGATGCAGATTTGGGACGGTTATTGCTTTGCCCACCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

167

Amino Acids

18.62

Weight (kDa)

4.96

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	333
Acc36I	ACCTGC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	277
AciI	CCGC	4 cut(s)	11, 79, 186, 243
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	2 cut(s)	156, 250
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	165, 304
AjnI	CCWGG	2 cut(s)	252, 257
AluBI	AGCT	3 cut(s)	21, 177, 501
AluI	AGCT	3 cut(s)	21, 177, 501
Alw26I	GTCTC	2 cut(s)	138, 347
AlwI	GGATC	1 cut(s)	419
AoxI	GGCC	3 cut(s)	156, 250, 255
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	247, 322, 371
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	2 cut(s)	232, 307
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	2 cut(s)	254, 259
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	138, 347
BfaI	CTAG	2 cut(s)	498, 502
BfoI	RGCGCY	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	333
BisI	GCNGC	1 cut(s)	170
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	3 cut(s)	103, 254, 259
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	3 cut(s)	103, 254, 259
BmsI	GCATC	1 cut(s)	454
BpmI	CTGGAG	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 304
Bse1I	ACTGG	2 cut(s)	281, 361
BseBI	CCWGG	2 cut(s)	254, 259
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	165, 304
BseNI	ACTGG	2 cut(s)	281, 361
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	156
BshFI	GGCC	3 cut(s)	158, 252, 257
BshNI	GGYRCC	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	66, 102, 298
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	2 cut(s)	165, 304
BsmAI	GTCTC	2 cut(s)	138, 347
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	3 cut(s)	158, 252, 257
Bsp143I	GATC	2 cut(s)	424, 439
Bsp1720I	GCTNAGC	1 cut(s)	173
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	4 cut(s)	11, 79, 186, 243
BspANI	GGCC	3 cut(s)	158, 252, 257
BspLI	GGNNCC	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	281, 361
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	424, 439
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	254, 259
Bst4CI	ACNGT	1 cut(s)	480
BstDEI	CTNAG	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	292
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	427, 442
BstMAI	GTCTC	2 cut(s)	138, 347
BstMBI	GATC	2 cut(s)	424, 439
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 78, 183, 249, 498
BstNI	CCWGG	2 cut(s)	254, 259
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	3 cut(s)	101, 252, 257
BstV1I	GCAGC	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	158, 252, 257
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	126, 288
BveI	ACCTGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	27, 88, 160
CviJI	RGCY	9 cut(s)	21, 158, 169, 177, 252, 257, 391, 422, 501
CviKI_1	RGCY	9 cut(s)	21, 158, 169, 177, 252, 257, 391, 422, 501
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	2 cut(s)	426, 441
DpnII	GATC	2 cut(s)	424, 439
EaeI	YGGCCR	2 cut(s)	156, 250
Eco130I	CCWWGG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	252, 257
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	30, 91, 163
FaiI	YATR	9 cut(s)	28, 54, 89, 132, 137, 139, 161, 266, 365
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	3 cut(s)	26, 87, 159
FauI	CCCGC	3 cut(s)	86, 179, 236
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	2 cut(s)	498, 502
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	158, 252, 257
HapII	CCGG	3 cut(s)	66, 102, 298
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	30, 91, 163
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	2 cut(s)	44, 325
HpaII	CCGG	3 cut(s)	66, 102, 298
HphI	GGTGA	3 cut(s)	247, 322, 371
Hpy188I	TCNGA	4 cut(s)	43, 49, 271, 330
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	158, 365
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4V	TGCA	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 78, 183, 249, 498
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	30, 91, 163
HspAI	GCGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	424, 439
LmnI	GCTCC	2 cut(s)	18, 105
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	2 cut(s)	498, 502
MalI	GATC	2 cut(s)	426, 441
MboI	GATC	2 cut(s)	424, 439
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	2 cut(s)	317, 399
MluNI	TGGCCA	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	3 cut(s)	66, 102, 298
MspR9I	CCNGG	3 cut(s)	103, 254, 259
MvaI	CCWGG	2 cut(s)	254, 259
MwoI	GCNNNNNNNGC	5 cut(s)	10, 78, 183, 249, 498
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	424, 439
NlaIII	CATG	3 cut(s)	30, 91, 163
NlaIV	GGNNCC	1 cut(s)	279
NspI	RCATGY	1 cut(s)	30
PaqCI	CACCTGC	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	44, 325
PkrI	GCNGC	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	252, 257
PspGI	CCWGG	2 cut(s)	252, 257
PspN4I	GGNNCC	1 cut(s)	279
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	424, 439
ScrFI	CCNGG	3 cut(s)	103, 254, 259
SetI	ASST	9 cut(s)	23, 131, 179, 276, 347, 439, 453, 499, 503
SfaNI	GCATC	1 cut(s)	454
Sse9I	AATT	2 cut(s)	317, 399
SsiI	CCGC	4 cut(s)	11, 79, 186, 243
SspMI	CTAG	2 cut(s)	498, 502
StyD4I	CCNGG	3 cut(s)	101, 252, 257
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	480
TasI	AATT	2 cut(s)	317, 399
TfiI	GAWTC	2 cut(s)	44, 325
TscAI	CASTG	2 cut(s)	126, 288
TseI	GCWGC	1 cut(s)	169
TspRI	CASTG	2 cut(s)	126, 288
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	2 cut(s)	498, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.