Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Reverse (-)

62672735 .. 62673160

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTGCGAAGGTTCGGATTCCAACCGGATCATCGTCACCGGAGGGCGGTTCCCGCCACATCATGTTCGGTGCCACGGGAGCAAGATGACCTCGGTCGAGAGGTGTGATATGTGTAGAGACGAGTGGGTGGCCATGGAAGGGCTACCGAGCTTTACGGCCGGTGTGTTGGGTTCTTTTTGGGGATGTGGAGAGAGAGGAGTTTTGGGTGATGGGCGGTACGGCCGAGCCAAGACTATATCGAGAGGTGGTGCGGTGGACGAGTATTACCGAAATGCGGTGGTGATGGAATTGACAAATCGGAATGGTGGTGGCGGGTGGAAGGAGACTAGTGATATGTGGAAAGGAGGGGAGAGAATGAGGCTTGGGAAAATTGTGGTGGTTGATAATGAGGTTGATCCTGCACAAACCTGGTGTGTTCATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

141

Amino Acids

15.5

Weight (kDa)

6.89

Isoelectric Point (pI)

14.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AciI	CCGC	6 cut(s)	46, 53, 214, 251, 275, 312
AclWI	GGATC	2 cut(s)	35, 389
AcoI	YGGCCR	3 cut(s)	129, 156, 220
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	45, 138, 274
AhlI	ACTAGT	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	2 cut(s)	111, 317
AlwI	GGATC	2 cut(s)	35, 389
AoxI	GGCC	3 cut(s)	129, 156, 220
AsuHPI	GGTGA	3 cut(s)	28, 218, 292
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	69
BccI	CCATC	2 cut(s)	203, 277
BceAI	ACGGC	2 cut(s)	171, 235
BciT130I	CCWGG	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	111, 317
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	409
BmiI	GGNNCC	2 cut(s)	50, 71
BmrFI	CCNGG	1 cut(s)	409
BoxI	GACNNNNGTC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	73, 90, 132
BsaWI	WCCGGW	2 cut(s)	24, 38
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 138, 274
Bse118I	RCCGGY	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	3 cut(s)	73, 90, 132
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	3 cut(s)	45, 138, 274
BseRI	GAGGAG	1 cut(s)	210
BseX3I	CGGCCG	2 cut(s)	156, 220
BsgI	GTGCAG	1 cut(s)	384
Bsh1285I	CGRYCG	3 cut(s)	96, 159, 223
BshFI	GGCC	3 cut(s)	131, 158, 222
BshNI	GGYRCC	1 cut(s)	69
BsiEI	CGRYCG	3 cut(s)	96, 159, 223
BsiSI	CCGG	3 cut(s)	25, 39, 159
BslI	CCNNNNNNNGG	3 cut(s)	45, 138, 274
BsmAI	GTCTC	2 cut(s)	111, 317
BsmBI	CGTCTC	1 cut(s)	111
BsnI	GGCC	3 cut(s)	131, 158, 222
Bsp143I	GATC	2 cut(s)	27, 394
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	6 cut(s)	46, 53, 214, 251, 275, 312
BspANI	GGCC	3 cut(s)	131, 158, 222
BspLI	GGNNCC	2 cut(s)	50, 71
BspPI	GGATC	2 cut(s)	35, 389
BspT107I	GGYRCC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	73, 90, 132
BssMI	GATC	2 cut(s)	27, 394
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	409
BstDSI	CCRYGG	2 cut(s)	73, 132
BstF5I	GGATG	1 cut(s)	188
BstKTI	GATC	2 cut(s)	30, 397
BstMAI	GTCTC	2 cut(s)	111, 317
BstMBI	GATC	2 cut(s)	27, 394
BstMCI	CGRYCG	3 cut(s)	96, 159, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 78
BstNI	CCWGG	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	407
BstZI	CGGCCG	2 cut(s)	156, 220
BsuRI	GGCC	3 cut(s)	131, 158, 222
BtgI	CCRYGG	2 cut(s)	73, 132
BtsCI	GGATG	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	158
CsiI	ACCWGGT	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	62, 133, 419
CviJI	RGCY	7 cut(s)	131, 142, 150, 158, 222, 227, 361
CviKI_1	RGCY	7 cut(s)	131, 142, 150, 158, 222, 227, 361
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	2 cut(s)	29, 396
DpnII	GATC	2 cut(s)	27, 394
EaeI	YGGCCR	3 cut(s)	129, 156, 220
EagI	CGGCCG	2 cut(s)	156, 220
EclXI	CGGCCG	2 cut(s)	156, 220
Eco130I	CCWWGG	1 cut(s)	132
Eco52I	CGGCCG	2 cut(s)	156, 220
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	3 cut(s)	65, 136, 422
FaiI	YATR	6 cut(s)	63, 110, 134, 236, 335, 420
FatI	CATG	3 cut(s)	61, 132, 418
FauI	CCCGC	2 cut(s)	60, 305
FokI	GGATG	1 cut(s)	195
FspBI	CTAG	1 cut(s)	327
HaeIII	GGCC	3 cut(s)	131, 158, 222
HapII	CCGG	3 cut(s)	25, 39, 159
Hin1II	CATG	3 cut(s)	65, 136, 422
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	3 cut(s)	25, 39, 159
HphI	GGTGA	3 cut(s)	28, 218, 292
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	16, 300
Hpy188III	TCNNGA	2 cut(s)	97, 240
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	131, 313
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 78
Hsp92II	CATG	3 cut(s)	65, 136, 422
Kzo9I	GATC	2 cut(s)	27, 394
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	6 cut(s)	38, 52, 172, 394, 411, 421
MabI	ACCWGGT	1 cut(s)	407
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	29, 396
MboI	GATC	2 cut(s)	27, 394
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	287, 369
MluNI	TGGCCA	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	8 cut(s)	35, 93, 100, 188, 236, 338, 351, 382
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	131
MspI	CCGG	3 cut(s)	25, 39, 159
MspR9I	CCNGG	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	52, 78
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	27, 394
NlaIII	CATG	3 cut(s)	65, 136, 422
NlaIV	GGNNCC	2 cut(s)	50, 71
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	17
PshAI	GACNNNNGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	50, 71
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	27, 394
ScrFI	CCNGG	1 cut(s)	409
SetI	ASST	7 cut(s)	13, 92, 104, 152, 247, 393, 410
SexAI	ACCWGGT	1 cut(s)	407
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	2 cut(s)	287, 369
SsiI	CCGC	6 cut(s)	46, 53, 214, 251, 275, 312
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	2 cut(s)	96, 239
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	287, 369
TfiI	GAWTC	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	407
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.