Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Reverse (-)

41432339 .. 41433436

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1178000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCTCACGCCGCGCGAAAGTTTCGCCTACGCTGCAGTTCCAAAATCAGGAGAGATCGTCGCTGGCGGCGGATCCCGGCACATTTTGTTTAGCGCGACTGGAAGTCGAACGAGCTCGGTGAAGCGGGCCGTGTGCGTGGGGTTCTTTGTTGGCGACGGCAAGAAGATGAAGTTCTGGGTTATGGGTGGGTACGGCGAGTCCAGAACAATATCAGGGGTTTTCCCTGTGGATGAGCATTACAGAGACGCTGTGGTGATGGAATTGAAGAATGGGAATGGTGGTTGTAAGTGGAGAGAGGTTGGGGATATGTGGGAAGCAGGGGAGAGGATGAGACTGAGCAAAAATGTTGTCGTCGAAGATGGCGATGATTGCGGTAGACCTTCTTTTTCATGCTTGATCACAATGTTATATTCAGGTAATTTTTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

144

Amino Acids

15.63

Weight (kDa)

8.3

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	376
AccII	CGCG	3 cut(s)	13, 15, 95
AciI	CCGC	5 cut(s)	11, 66, 69, 124, 372
AclWI	GGATC	2 cut(s)	66, 79
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	265
AhdI	GACNNNNNGTC	1 cut(s)	102
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	237, 325
AlwI	GGATC	2 cut(s)	66, 79
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspLEI	GCGC	2 cut(s)	15, 95
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	130, 265
BamHI	GGATCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	250, 353
BceAI	ACGGC	3 cut(s)	113, 172, 208
BclI	TGATCA	1 cut(s)	396
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	237, 325
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	3 cut(s)	11, 33, 67
BlsI	GCNGC	3 cut(s)	12, 34, 68
Bme1390I	CCNGG	1 cut(s)	76
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	235, 333
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	3 cut(s)	13, 15, 95
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	237, 325
BsmBI	CGTCTC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	54, 71, 396
BspACI	CCGC	5 cut(s)	11, 66, 69, 124, 372
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	3 cut(s)	13, 15, 95
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	37
BspPI	GGATC	2 cut(s)	66, 79
BsrI	ACTGG	1 cut(s)	103
BssMI	GATC	3 cut(s)	54, 71, 396
BstC8I	GCNNGC	2 cut(s)	64, 126
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	235, 333
BstFNI	CGCG	3 cut(s)	13, 15, 95
BstHHI	GCGC	2 cut(s)	15, 95
BstKTI	GATC	3 cut(s)	57, 74, 399
BstMAI	GTCTC	2 cut(s)	237, 325
BstMBI	GATC	3 cut(s)	54, 71, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 32, 369
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	33
BstUI	CGCG	3 cut(s)	13, 15, 95
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	235, 333
Cac8I	GCNNGC	2 cut(s)	64, 126
CfoI	GCGC	2 cut(s)	15, 95
Cfr13I	GGNCC	1 cut(s)	126
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	1 cut(s)	390
CviJI	RGCY	2 cut(s)	114, 128
CviKI_1	RGCY	2 cut(s)	114, 128
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	3 cut(s)	56, 73, 398
DpnII	GATC	3 cut(s)	54, 71, 396
DriI	GACNNNNNGTC	1 cut(s)	102
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	116
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	1 cut(s)	393
FaiI	YATR	4 cut(s)	182, 308, 391, 409
FatI	CATG	1 cut(s)	389
FauI	CCCGC	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	11, 33, 67
FokI	GGATG	2 cut(s)	242, 340
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	11, 33, 67
GlaI	GCGC	2 cut(s)	14, 94
GluI	GCNGC	3 cut(s)	11, 33, 67
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	2 cut(s)	15, 95
Hin1II	CATG	1 cut(s)	393
Hin6I	GCGC	2 cut(s)	13, 93
HinP1I	GCGC	2 cut(s)	13, 93
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	2 cut(s)	130, 265
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188III	TCNNGA	2 cut(s)	48, 201
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	3 cut(s)	62, 158, 356
HpyAV	CCTTC	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 32, 369
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	1 cut(s)	393
HspAI	GCGC	2 cut(s)	13, 93
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	54, 71, 396
Lsp1109I	GCAGC	1 cut(s)	19
MalI	GATC	3 cut(s)	56, 73, 398
MboI	GATC	3 cut(s)	54, 71, 396
MboII	GAAGA	3 cut(s)	175, 277, 368
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	2 cut(s)	260, 418
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	2 cut(s)	289, 318
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	76
MvnI	CGCG	3 cut(s)	13, 15, 95
MwoI	GCNNNNNNNGC	3 cut(s)	10, 32, 369
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	3 cut(s)	54, 71, 396
NlaIII	CATG	1 cut(s)	393
NlaIV	GGNNCC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PkrI	GCNGC	3 cut(s)	12, 34, 68
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	116
SatI	GCNGC	3 cut(s)	11, 33, 67
Sau3AI	GATC	3 cut(s)	54, 71, 396
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	4 cut(s)	116, 300, 382, 418
SfcI	CTRYAG	1 cut(s)	33
Sse9I	AATT	2 cut(s)	260, 418
SsiI	CCGC	5 cut(s)	11, 66, 69, 124, 372
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	74
TaqI	TCGA	2 cut(s)	106, 354
TasI	AATT	2 cut(s)	260, 418
TauI	GCSGC	2 cut(s)	13, 69
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	182, 378
XmiI	GTMKAC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.