Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Forward (+)

28370910 .. 28373087

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1188500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGTGGGTACGACGAGTCCAGAATAATATCAAGGGTTTTTCCTGTGGATGAACATTACAGAGACGCTGTGGTGACGGAATTGAAGAATGGGAATGGTGGCTGTAGGTGGAGAGAGGTTGGGGATATGTGGGAAGCAGGGGAGAGGGTGAGACTGGGCAAAATTGTTGTCGTTGAAGATGGCGATGATTGTGGTGGACCTGCTGCCTTCATGCTTGATCAAAATCTAGTGACGAATATCCGAGCTTTTTGGATTGGTGGAAGTTGTTCTACCGACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

94

Amino Acids

10.27

Weight (kDa)

4.59

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	85, 176
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	2 cut(s)	57, 145
ApeKI	GCWGC	1 cut(s)	203
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
Asp700I	GAANNNNTTC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	85, 160
AvaII	GGWCC	1 cut(s)	197
BarI	GAAGNNNNNNTAC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	57, 145
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	222
BseGI	GGATG	1 cut(s)	55
BseJI	GATNNNNATC	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	57, 145
BsmBI	CGTCTC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	57, 145
BstMBI	GATC	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	2 cut(s)	102, 245
CviKI_1	RGCY	2 cut(s)	102, 245
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	1 cut(s)	214
FaiI	YATR	3 cut(s)	128, 212, 280
FatI	CATG	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	204
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	214
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	2 cut(s)	85, 160
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	197
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	34, 57, 123, 140, 213
Lsp1109I	GCAGC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	2 cut(s)	73, 229
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	97, 188
MluCI	AATT	2 cut(s)	80, 162
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	2 cut(s)	109, 138
MroXI	GAANNNNTTC	1 cut(s)	265
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	73, 229
PdmI	GAANNNNTTC	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	26
SetI	ASST	4 cut(s)	110, 120, 202, 247
SfcI	CTRYAG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	197
Sse9I	AATT	2 cut(s)	80, 162
SspMI	CTAG	1 cut(s)	227
TasI	AATT	2 cut(s)	80, 162
TseFI	GTSAC	2 cut(s)	73, 229
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	2 cut(s)	73, 229
TspDTI	ATGAA	2 cut(s)	66, 199
TspGWI	ACGGA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.