Rh2DG404200

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
58862985 .. 58866596
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG404200.1

Sequence Viewer

Length: 312 bp
ATGCTAACCCCACACGGGAGCTTCGCATGTGCGAAGGTTCCAGATTCCGACCAGATCATCGTCACCGGAGGCGGTTCCCGCCACACCATGTTCAACACCACCGGGAGCAGGATGACCTCGGTGGAGAGGTATGATATATGTAGAGACGAGTGGGTGGCAATGGAAGGGCTACATAGCTTTCGGGCCGGGTGTGTGGGGTTCTTTGCTGGAGATGTAGAGGAGAGGGAGTTTTGGGTGATGGGCGGGTATAACCAGGCCAAGACTATATCAGAGGTGGTGCCGGTGGACAAGTATTACCAGATGCGGTGGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.64

Weight (kDa)

5.5

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 277
AciI CCGC 4 cut(s) 72, 79, 243, 304
AfiI CCNNNNNNNGG 2 cut(s) 15, 108
AgsI TTSAA 1 cut(s) 94
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 2 cut(s) 21, 177
AluI AGCT 2 cut(s) 21, 177
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 2 cut(s) 183, 255
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 2 cut(s) 103, 187
AsuHPI GGTGA 2 cut(s) 55, 247
BanI GGYRCC 1 cut(s) 277
BccI CCATC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 254
BcnI CCSGG 2 cut(s) 103, 187
BcoDI GTCTC 1 cut(s) 138
Bme1390I CCNGG 3 cut(s) 103, 187, 254
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 3 cut(s) 39, 76, 279
BmrFI CCNGG 3 cut(s) 103, 187, 254
BmsI GCATC 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 103, 187
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 108
Bse118I RCCGGY 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 15, 108
BseMI GCAATG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 233
BshFI GGCC 2 cut(s) 185, 257
BshNI GGYRCC 1 cut(s) 277
BsiSI CCGG 4 cut(s) 66, 102, 186, 281
BslI CCNNNNNNNGG 2 cut(s) 15, 108
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 2 cut(s) 185, 257
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 4 cut(s) 72, 79, 243, 304
BspANI GGCC 2 cut(s) 185, 257
BspLI GGNNCC 3 cut(s) 39, 76, 279
BspT107I GGYRCC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 3 cut(s) 101, 185, 252
BsuRI GGCC 2 cut(s) 185, 257
BtsCI GGATG 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 183
CviAII CATG 2 cut(s) 27, 88
CviJI RGCY 5 cut(s) 21, 169, 177, 185, 257
CviKI_1 RGCY 5 cut(s) 21, 169, 177, 185, 257
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 30, 91
FaiI YATR 8 cut(s) 28, 89, 132, 137, 139, 174, 249, 266
FatI CATG 2 cut(s) 26, 87
FauI CCCGC 2 cut(s) 86, 236
FokI GGATG 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 2 cut(s) 185, 257
HapII CCGG 4 cut(s) 66, 102, 186, 281
Hin1II CATG 2 cut(s) 30, 91
HinfI GANTC 1 cut(s) 44
HpaII CCGG 4 cut(s) 66, 102, 186, 281
HphI GGTGA 2 cut(s) 55, 247
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 49, 271
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 28, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 30, 91
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 18, 105
LweI GCATC 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 62, 120, 127, 211, 216, 265
MspI CCGG 4 cut(s) 66, 102, 186, 281
MspR9I CCNGG 3 cut(s) 103, 187, 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 78
NciI CCSGG 2 cut(s) 103, 187
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 30, 91
NlaIV GGNNCC 3 cut(s) 39, 76, 279
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 1 cut(s) 30
PfeI GAWTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 39, 76, 279
PspPI GGNCC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 183
ScrFI CCNGG 3 cut(s) 103, 187, 254
SetI ASST 6 cut(s) 23, 39, 119, 131, 179, 276
SfaNI GCATC 1 cut(s) 291
SsiI CCGC 4 cut(s) 72, 79, 243, 304
StyD4I CCNGG 3 cut(s) 101, 185, 252
TfiI GAWTC 1 cut(s) 44
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
XceI RCATGY 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.