Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Forward (+)

28654503 .. 28655216

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1189700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCCCAGCAACCCTCACGTCTACGACCTTTGCAATTTCACCTCCTTCTCCATTAGGCCCCACATCAACGTCATCAGCGGCCATCTCTTCGACACTCGTTCGTTTTCGATTGATCGTCCCTCCCTGTCCTCCGTCGTCTTCCTGTTCGACTTCAGCACTTCTTCGTGGGACTTCATCGCCCCGATGCTCACACCGCGTCGCATGTGTTACGGTTCCAAAATCGAAAGTGATTCTCGTCACTGGCAGCGTATCTCGTCACACTTTTTTCAGCGCGGCTGGAAGCCGAATGAGCTGGAGTGGTATGATATTGGGCGAAATGCATGGTTCTTTGTTGGCGACAGTGAGAATGAGTTCTGGGTTATGGATAGGTACAGCAAGTCTAGAACAATATCAAGGGTTTTTCCTGTGGATGATCATTACAGAGACGTTGTCGTGATGACATTGAAGAATGGGAATGGTGGTTGTAGGTGGAGAGAGGTTGGGGATATATGGGAAGCAGGGAAGAGGATGAGACTGGGCAAAATTGTTGTCGTCGAAGATGGTGATGATTGCGGTGGACCTGCTGTCTTCATGCTTGATGGGAATGTTATATTCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

200

Amino Acids

23.13

Weight (kDa)

6.29

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	2 cut(s)	196, 273
AciI	CCGC	4 cut(s)	78, 194, 273, 552
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	136
AfaI	GTAC	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	445
AhdI	GACNNNNNGTC	1 cut(s)	563
AjiI	CACGTC	1 cut(s)	19
AluBI	AGCT	2 cut(s)	292, 597
AluI	AGCT	2 cut(s)	292, 597
Alw26I	GTCTC	2 cut(s)	417, 505
AoxI	GGCC	2 cut(s)	56, 79
ApeKI	GCWGC	1 cut(s)	244
ArsI	GACNNNNNNTTYG	2 cut(s)	513, 545
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	57, 557
AsuHPI	GGTGA	2 cut(s)	31, 554
AvaII	GGWCC	1 cut(s)	557
BbsI	GAAGAC	2 cut(s)	130, 559
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	3 cut(s)	90, 533, 572
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	417, 505
BfaI	CTAG	2 cut(s)	381, 598
BfuAI	ACCTGC	1 cut(s)	568
BisI	GCNGC	3 cut(s)	79, 245, 274
BlsI	GCNGC	3 cut(s)	80, 246, 275
Bme18I	GGWCC	1 cut(s)	557
BmeRI	GACNNNNNGTC	1 cut(s)	563
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	57, 557
BmiI	GGNNCC	2 cut(s)	59, 214
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	524
BpiI	GAAGAC	2 cut(s)	130, 559
BpmI	CTGGAG	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	245, 519
BseGI	GGATG	2 cut(s)	415, 513
BseNI	ACTGG	2 cut(s)	245, 519
BseXI	GCAGC	1 cut(s)	256
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	2 cut(s)	196, 273
BshFI	GGCC	2 cut(s)	58, 81
BslFI	GGGAC	2 cut(s)	102, 182
BsmAI	GTCTC	2 cut(s)	417, 505
BsmBI	CGTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	102, 182
BsnI	GGCC	2 cut(s)	58, 81
Bsp143I	GATC	2 cut(s)	112, 412
BspACI	CCGC	4 cut(s)	78, 194, 273, 552
BspANI	GGCC	2 cut(s)	58, 81
BspFNI	CGCG	2 cut(s)	196, 273
BspLI	GGNNCC	2 cut(s)	59, 214
BspMI	ACCTGC	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	245, 519
BssMI	GATC	2 cut(s)	112, 412
Bst4CI	ACNGT	2 cut(s)	212, 341
Bst6I	CTCTTC	2 cut(s)	92, 497
BstF5I	GGATG	2 cut(s)	415, 513
BstFNI	CGCG	2 cut(s)	196, 273
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	2 cut(s)	115, 415
BstMAI	GTCTC	2 cut(s)	417, 505
BstMBI	GATC	2 cut(s)	112, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 289
BstNSI	RCATGY	1 cut(s)	205
BstUI	CGCG	2 cut(s)	196, 273
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	2 cut(s)	130, 559
BsuRI	GGCC	2 cut(s)	58, 81
BtgZI	GCGATG	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	415, 513
BtsIMutI	CAGTG	2 cut(s)	238, 346
BveI	ACCTGC	1 cut(s)	568
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	57, 557
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	3 cut(s)	202, 321, 571
CviJI	RGCY	6 cut(s)	58, 81, 276, 283, 292, 597
CviKI_1	RGCY	6 cut(s)	58, 81, 276, 283, 292, 597
CviQI	GTAC	1 cut(s)	370
DpnI	GATC	2 cut(s)	114, 414
DpnII	GATC	2 cut(s)	112, 412
DriI	GACNNNNNGTC	1 cut(s)	563
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	92, 497
Eam1105I	GACNNNNNGTC	1 cut(s)	563
EarI	CTCTTC	2 cut(s)	92, 497
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	3 cut(s)	205, 324, 574
FaiI	YATR	8 cut(s)	203, 303, 322, 362, 488, 490, 572, 590
FaqI	GGGAC	2 cut(s)	102, 182
FatI	CATG	3 cut(s)	201, 320, 570
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	3 cut(s)	79, 245, 274
FokI	GGATG	2 cut(s)	422, 520
Fsp4HI	GCNGC	3 cut(s)	79, 245, 274
FspBI	CTAG	2 cut(s)	381, 598
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	3 cut(s)	79, 245, 274
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	58, 81
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	205, 324, 574
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	2 cut(s)	31, 554
Hpy166II	GTNNAC	2 cut(s)	22, 557
Hpy188III	TCNNGA	2 cut(s)	381, 433
Hpy8I	GTNNAC	2 cut(s)	22, 557
Hpy99I	CGWCG	3 cut(s)	137, 201, 536
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	2 cut(s)	212, 341
HpyCH4IV	ACGT	3 cut(s)	18, 69, 426
HpyCH4V	TGCA	2 cut(s)	33, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 289
HpySE526I	ACGT	3 cut(s)	18, 69, 426
Hsp92II	CATG	3 cut(s)	205, 324, 574
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	112, 412
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	381, 598
MaeII	ACGT	3 cut(s)	18, 69, 426
MaeIII	GTNAC	3 cut(s)	206, 236, 255
MalI	GATC	2 cut(s)	114, 414
MboI	GATC	2 cut(s)	112, 412
MboII	GAAGA	7 cut(s)	79, 130, 153, 457, 514, 548, 559
MluCI	AATT	2 cut(s)	34, 522
MnlI	CCTC	6 cut(s)	24, 52, 130, 139, 469, 498
Mph1103I	ATGCAT	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	78
MvnI	CGCG	2 cut(s)	196, 273
MwoI	GCNNNNNNNGC	2 cut(s)	193, 289
NdeII	GATC	2 cut(s)	112, 412
NlaIII	CATG	3 cut(s)	205, 324, 574
NlaIV	GGNNCC	2 cut(s)	59, 214
NmuCI	GTSAC	2 cut(s)	236, 255
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	428
PkrI	GCNGC	3 cut(s)	80, 246, 275
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	59, 214
PspPI	GGNCC	2 cut(s)	57, 557
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SatI	GCNGC	3 cut(s)	79, 245, 274
Sau3AI	GATC	2 cut(s)	112, 412
Sau96I	GGNCC	2 cut(s)	57, 557
SfaNI	GCATC	1 cut(s)	174
SinI	GGWCC	1 cut(s)	557
Sse9I	AATT	2 cut(s)	34, 522
SsiI	CCGC	4 cut(s)	78, 194, 273, 552
SspMI	CTAG	2 cut(s)	381, 598
TaaI	ACNGT	2 cut(s)	212, 341
TaiI	ACGT	3 cut(s)	21, 72, 429
TaqI	TCGA	5 cut(s)	90, 107, 147, 222, 534
TasI	AATT	2 cut(s)	34, 522
TauI	GCSGC	2 cut(s)	81, 276
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	2 cut(s)	245, 346
TseFI	GTSAC	2 cut(s)	236, 255
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	2 cut(s)	236, 255
TspDTI	ATGAA	2 cut(s)	163, 559
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	2 cut(s)	245, 346
Tth111I	GACNNNGTC	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	557
XbaI	TCTAGA	1 cut(s)	380
XceI	RCATGY	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	2 cut(s)	381, 598
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.