Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Forward (+)

5906115 .. 5906459

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1052300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGACAGGTTGCCAAGTTTTCGGGCTGGGTGCGCGGGGTTCTTTGTTGAGGATGGCGAGGAGAGGGAGTTCTGGGTTATGGGTGGGTACGGCGAGTCCAGAACAATTTTAGGGGTTTTTCCGGTGGACGAGCATTACAGAGACGTCGTGGTAATGGAATTGAAGAATGGGAATGGTGGTTGCAGGTGGAGAGAGGTTGGAGATATGTGGGAAGCATGGGAGAGGATAAGACTAGGCAAAACTGTTGTCGTGGAAGATGGCGATGAACTGGGTTTGGGCAGATTTGGTTTTTTTTTTTTTCTTCTCCTTCTCCCTCCTCTTCTTCTTCTTCTGCAGATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

115

Amino Acids

13.13

Weight (kDa)

4.77

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	174
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	174
AccII	CGCG	1 cut(s)	35
AciI	CCGC	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	163
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
Alw26I	GTCTC	1 cut(s)	135
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
AspLEI	GCGC	1 cut(s)	35
BccI	CCATC	2 cut(s)	47, 251
BceAI	ACGGC	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	278
BmuI	ACTGGG	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bse1I	ACTGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	2 cut(s)	74, 306
BseYI	CCCAGC	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	324
BstACI	GRCGYC	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	332
BstUI	CGCG	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	1 cut(s)	26
CviKI_1	RGCY	1 cut(s)	26
CviQI	GTAC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	219
FaiI	YATR	3 cut(s)	80, 206, 217
FatI	CATG	1 cut(s)	215
FauI	CCCGC	1 cut(s)	28
FokI	GGATG	1 cut(s)	65
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	34
GsaI	CCCAGC	1 cut(s)	30
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	219
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	95, 337
HpaII	CCGG	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	183, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	219
HspAI	GCGC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	12, 58, 112, 135, 169, 254
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	144
MboII	GAAGA	7 cut(s)	175, 266, 293, 311, 314, 317, 320
MluCI	AATT	2 cut(s)	105, 158
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	7 cut(s)	43, 52, 57, 187, 216, 324, 327
MseI	TTAA	1 cut(s)	343
MspI	CCGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	219
PaqCI	CACCTGC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	336
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	343
SchI	GAGTC	1 cut(s)	104
SetI	ASST	4 cut(s)	11, 147, 188, 198
SfcI	CTRYAG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	105, 158
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	147
TasI	AATT	2 cut(s)	105, 158
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	279
XspI	CTAG	1 cut(s)	233
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.