Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000367.1

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Reverse (-)

805255 .. 806611

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000367.1_g000165.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgctaactccgcgttggagcttcgcatgtgcgaaagtttcggattctgaccatatcatcgtcgccggaggcagttcccgccacatcatgtttagcgccaccgggagcaagatgacttcagtggagaggtatgatatatgtagagacaagtgggtggccatggaagggctgccaagctttcggggcgggtgtgtggggttctttgctggagatgtggaggagagggagttttgggtgatgggcgggtacggccaggccaggactatatcagaggtggtgccggtggacgaggattaccggaatgtggtggtgatggaattgacgaatcggaatggtggtggcaggtggagggagactggtgatatgtgggaaggaggggagagaatgaggcttgggaaaattgtggtggttgataatgaggttgatcctgcacaacctgctcatccagactattttacagtgaagatattccatggagggcgcataatgtttaaacctatcaaaggcagttgccaccaaaggaaaacaagaagaggaaggccagcaataatgaaggtcaagagagggaagaaagatcatatgtctgccaatgaattgaggaataaagcaagggagagagcagagtatcaaaggaaaaagtttgctgctgccaaagctgcaaagctggtagcaaataggtctgccccatccacatcaaggcctgcacaatctacaaccagacctataagctccaggccaactcaaactacatctgccccaaccagaccaacgagttcaaggcttccacaacctttaatagcatcaagcaagcaggctacaacttcaacaaggacatctcagaggatcagagaaacgtcagttacaagagatggaaaatatgaagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

295

Amino Acids

32.99

Weight (kDa)

10.29

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	333
Acc36I	ACCTGC	2 cut(s)	333, 445
AccB1I	GGYRCC	1 cut(s)	277
AccII	CGCG	1 cut(s)	13
AciI	CCGC	4 cut(s)	11, 79, 186, 243
AclWI	GGATC	2 cut(s)	419, 851
AcoI	YGGCCR	2 cut(s)	156, 250
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	4 cut(s)	165, 304, 503, 696
AgsI	TTSAA	2 cut(s)	777, 825
AjnI	CCWGG	3 cut(s)	252, 257, 731
AluBI	AGCT	5 cut(s)	21, 177, 656, 664, 729
AluI	AGCT	5 cut(s)	21, 177, 656, 664, 729
Alw26I	GTCTC	2 cut(s)	138, 347
AlwI	GGATC	2 cut(s)	419, 851
AoxI	GGCC	6 cut(s)	156, 250, 255, 539, 698, 734
ApeKI	GCWGC	4 cut(s)	169, 644, 647, 656
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	98, 483
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	247, 322, 371
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	277
BbvI	GCAGC	4 cut(s)	156, 631, 634, 643
BccI	CCATC	4 cut(s)	232, 307, 694, 863
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	3 cut(s)	254, 259, 733
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	138, 347
BfoI	RGCGCY	1 cut(s)	99
BfuAI	ACCTGC	2 cut(s)	333, 445
BisI	GCNGC	4 cut(s)	170, 645, 648, 657
BlsI	GCNGC	4 cut(s)	171, 646, 649, 658
Bme1390I	CCNGG	4 cut(s)	103, 254, 259, 733
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	4 cut(s)	103, 254, 259, 733
BmsI	GCATC	1 cut(s)	809
BpmI	CTGGAG	2 cut(s)	228, 715
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	159, 472
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	4 cut(s)	165, 304, 503, 696
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	361
BseBI	CCWGG	3 cut(s)	254, 259, 733
BseDI	CCNNGG	2 cut(s)	159, 472
BseGI	GGATG	2 cut(s)	442, 686
BseLI	CCNNNNNNNGG	4 cut(s)	165, 304, 503, 696
BseMII	CTCAG	1 cut(s)	851
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	4 cut(s)	156, 631, 634, 643
BsgI	GTGCAG	2 cut(s)	414, 687
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	6 cut(s)	158, 252, 257, 541, 700, 736
BshNI	GGYRCC	1 cut(s)	277
BsiSI	CCGG	4 cut(s)	66, 102, 281, 298
BslI	CCNNNNNNNGG	4 cut(s)	165, 304, 503, 696
BsmAI	GTCTC	2 cut(s)	138, 347
BsnI	GGCC	6 cut(s)	158, 252, 257, 541, 700, 736
Bsp143I	GATC	3 cut(s)	424, 574, 843
Bsp19I	CCATGG	2 cut(s)	159, 472
BspACI	CCGC	4 cut(s)	11, 79, 186, 243
BspANI	GGCC	6 cut(s)	158, 252, 257, 541, 700, 736
BspCNI	CTCAG	1 cut(s)	850
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	279
BspMI	ACCTGC	2 cut(s)	333, 445
BspPI	GGATC	2 cut(s)	419, 851
BspT107I	GGYRCC	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	159, 472
BssMI	GATC	3 cut(s)	424, 574, 843
BssT1I	CCWWGG	2 cut(s)	159, 472
Bst2UI	CCWGG	3 cut(s)	254, 259, 733
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	526
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	4 cut(s)	543, 702, 809, 813
BstDEI	CTNAG	1 cut(s)	837
BstDSI	CCRYGG	2 cut(s)	159, 472
BstENI	CCTNNNNNAGG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	442, 686
BstFNI	CGCG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	98, 483
BstKTI	GATC	3 cut(s)	427, 577, 846
BstMAI	GTCTC	2 cut(s)	138, 347
BstMBI	GATC	3 cut(s)	424, 574, 843
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 78, 183, 249, 437, 653, 656
BstNI	CCWGG	3 cut(s)	254, 259, 733
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	4 cut(s)	101, 252, 257, 731
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	4 cut(s)	156, 631, 634, 643
BsuRI	GGCC	6 cut(s)	158, 252, 257, 541, 700, 736
BtgI	CCRYGG	2 cut(s)	159, 472
BtsCI	GGATG	2 cut(s)	442, 686
BtsIMutI	CAGTG	2 cut(s)	126, 465
BveI	ACCTGC	2 cut(s)	333, 445
Cac8I	GCNNGC	4 cut(s)	543, 702, 809, 813
CfoI	GCGC	2 cut(s)	98, 483
Cfr10I	RCCGGY	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	4 cut(s)	27, 88, 160, 473
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	837
DpnI	GATC	3 cut(s)	426, 576, 845
DpnII	GATC	3 cut(s)	424, 574, 843
DraI	TTTAAA	1 cut(s)	493
EaeI	YGGCCR	2 cut(s)	156, 250
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	159, 472
Eco147I	AGGCCT	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	501
EcoRII	CCWGG	3 cut(s)	252, 257, 731
EcoT14I	CCWWGG	2 cut(s)	159, 472
ErhI	CCWWGG	2 cut(s)	159, 472
FaeI	CATG	4 cut(s)	30, 91, 163, 476
FatI	CATG	4 cut(s)	26, 87, 159, 472
FauI	CCCGC	3 cut(s)	86, 179, 236
FauNDI	CATATG	1 cut(s)	579
Fnu4HI	GCNGC	4 cut(s)	170, 645, 648, 657
FokI	GGATG	2 cut(s)	429, 673
Fsp4HI	GCNGC	4 cut(s)	170, 645, 648, 657
GlaI	GCGC	2 cut(s)	97, 482
GluI	GCNGC	4 cut(s)	170, 645, 648, 657
GsuI	CTGGAG	2 cut(s)	228, 715
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	6 cut(s)	158, 252, 257, 541, 700, 736
HapII	CCGG	4 cut(s)	66, 102, 281, 298
HhaI	GCGC	2 cut(s)	98, 483
Hin1II	CATG	4 cut(s)	30, 91, 163, 476
Hin6I	GCGC	2 cut(s)	96, 481
HinP1I	GCGC	2 cut(s)	96, 481
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	2 cut(s)	44, 325
HpaII	CCGG	4 cut(s)	66, 102, 281, 298
HphI	GGTGA	3 cut(s)	247, 322, 371
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	6 cut(s)	43, 49, 271, 330, 840, 848
Hpy188III	TCNNGA	2 cut(s)	446, 559
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	158, 365, 531, 547
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	1 cut(s)	854
HpyCH4V	TGCA	3 cut(s)	431, 659, 704
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 78, 183, 249, 437, 653, 656
HpyF3I	CTNAG	1 cut(s)	837
HpySE526I	ACGT	1 cut(s)	854
Hsp92II	CATG	4 cut(s)	30, 91, 163, 476
HspAI	GCGC	2 cut(s)	96, 481
Kzo9I	GATC	3 cut(s)	424, 574, 843
LmnI	GCTCC	3 cut(s)	18, 105, 734
Lsp1109I	GCAGC	4 cut(s)	156, 631, 634, 643
LweI	GCATC	1 cut(s)	809
MaeII	ACGT	1 cut(s)	854
MaeIII	GTNAC	1 cut(s)	859
MalI	GATC	3 cut(s)	426, 576, 845
MboI	GATC	3 cut(s)	424, 574, 843
MboII	GAAGA	3 cut(s)	475, 543, 580
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	3 cut(s)	317, 399, 593
MluNI	TGGCCA	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	2 cut(s)	492, 794
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	4 cut(s)	66, 102, 281, 298
MspR9I	CCNGG	4 cut(s)	103, 254, 259, 733
MssI	GTTTAAAC	1 cut(s)	493
MvaI	CCWGG	3 cut(s)	254, 259, 733
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	7 cut(s)	10, 78, 183, 249, 437, 653, 656
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	2 cut(s)	159, 472
NdeI	CATATG	1 cut(s)	579
NdeII	GATC	3 cut(s)	424, 574, 843
NlaIII	CATG	4 cut(s)	30, 91, 163, 476
NlaIV	GGNNCC	1 cut(s)	279
NspI	RCATGY	1 cut(s)	30
PaqCI	CACCTGC	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	44, 325
PkrI	GCNGC	4 cut(s)	171, 646, 649, 658
PmeI	GTTTAAAC	1 cut(s)	493
Psp6I	CCWGG	3 cut(s)	252, 257, 731
PspGI	CCWGG	3 cut(s)	252, 257, 731
PspN4I	GGNNCC	1 cut(s)	279
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	492, 794
SatI	GCNGC	4 cut(s)	170, 645, 648, 657
Sau3AI	GATC	3 cut(s)	424, 574, 843
ScrFI	CCNGG	4 cut(s)	103, 254, 259, 733
SfaNI	GCATC	1 cut(s)	809
Sse9I	AATT	3 cut(s)	317, 399, 593
SseBI	AGGCCT	1 cut(s)	700
SsiI	CCGC	4 cut(s)	11, 79, 186, 243
StuI	AGGCCT	1 cut(s)	700
StyD4I	CCNGG	4 cut(s)	101, 252, 257, 731
StyI	CCWWGG	2 cut(s)	159, 472
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	1 cut(s)	857
TasI	AATT	3 cut(s)	317, 399, 593
TfiI	GAWTC	2 cut(s)	44, 325
Tru1I	TTAA	2 cut(s)	492, 794
Tru9I	TTAA	2 cut(s)	492, 794
TscAI	CASTG	2 cut(s)	126, 465
TseI	GCWGC	4 cut(s)	169, 644, 647, 656
TspDTI	ATGAA	2 cut(s)	566, 606
TspRI	CASTG	2 cut(s)	126, 465
XagI	CCTNNNNNAGG	1 cut(s)	501
XceI	RCATGY	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.