Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Forward (+)

19332640 .. 19332867

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1119000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGACAGGTTGCCAAGTTTTCGGGCTAGGTGCGCGGGGTTCTTTGTTGGGGATGGCGAGGAGAGGGAGTTCTGGGTTACGGGTGGGTACGGCGAGTCCAGAACAATTTTAGGGGTTTTTCCGGTGGACGAGCATTACAGAGACGTCGTGGTAATGGAATTGAAGAATGGGAATGGTGGTTGCAGGTGGAGAGAGGTTGGAATATGTGGGAAGCAGGGGAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

76

Amino Acids

8.41

Weight (kDa)

6.56

Isoelectric Point (pI)

26.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	174
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	174
AccII	CGCG	1 cut(s)	35
AciI	CCGC	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	163
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
Alw26I	GTCTC	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	35
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
BseGI	GGATG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	174
BssNI	GRCGYC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstUI	CGCG	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	88
CviJI	RGCY	1 cut(s)	26
CviKI_1	RGCY	1 cut(s)	26
CviQI	GTAC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	135
FaiI	YATR	1 cut(s)	205
FauI	CCCGC	1 cut(s)	28
FokI	GGATG	1 cut(s)	65
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	34
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	58, 112, 135, 169, 200
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	175
MluCI	AATT	2 cut(s)	105, 158
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	4 cut(s)	52, 57, 187, 215
MspI	CCGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	32
PaqCI	CACCTGC	1 cut(s)	174
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	104
SetI	ASST	5 cut(s)	11, 32, 147, 188, 198
Sse9I	AATT	2 cut(s)	105, 158
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	27
TaiI	ACGT	1 cut(s)	147
TasI	AATT	2 cut(s)	105, 158
XspI	CTAG	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.