Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Forward (+)

19489831 .. 19492648

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCCCTGCAACCCCCACGTCTACGGCCTCTGCAACTTCACCTCCCTCTCCGTTGGGCCCCACCTCTACGTCATCGGCGGCTCCCTCTTCGACACTCGCTCGTTTCCGATCGACCTCCCCTCCCCGTCCTCCGCCATATTCCGGTTCGACTTCAGCACTTCTTCGTGGGACTTCCTCGCCCCGATGCTCACACCGCGCGGAAGTTTCGCCTGTGCTGCGGTTCCAAAATCGGGAGAGATTCTAGTCGCCGGCGGCGGATCCCGGCACACTCTGTTCAGCGCGGCTGGAAGCCGAACGAGCTCGGTGGAGCGGTATGATATTGGGAGAAATGACTGGGTTGCAATGGATGGGTTGCCAGGTTCTCGGGCCGGGTGCGCGGGGTTCTTTGTTGGCGACGGCGAGAAGAGGGAGTTCTGGGTTATGGGTGGGTACGGCGAATCCAGAACAAGATCAGGGGTTTTTCCTGTGGATGAGCATTACAGAGACGCTGTGGTGATGGAATTGAAGAATGGGAATGGTGGCTGTAGGTGGAGAGAGGTTGGGGATATGTGGGAAGCAGGGGAGAGGGTGAGACTGGGCAAAATTGTTGTCGTCGAAGGTGGCGATGATTGCGGTGGATCTGCTGTCTTCATGCTTGATCGGAATGTTATATTCAGATATGACATGGCTTCAAACCGTTGGTGTAAGGAGTCACGTATACCAAGACAGGCCGCATGCAACTCTGCATTTAGATTCGTTGTATTGGATGGAGAGTTGCATGTAATAACCCTTTTGAAGGCAGTCGAGCCAGCAGAAATCTGCAGGTCGCGATTGCATACGAGAGCAGGCACTCTTTACGTCCAAATATACCATCCTAAGAAGAAGACATGGAGATCTATCATAACAAAGTCACCTTTCCATTACAGCTTGGATTTCAATACTGCCGTTATGAGCACCATTTGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

316

Amino Acids

34.8

Weight (kDa)

8.51

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_1	PF01344	11 - 62	2e-06	Kelch motif
Kelch_KLHDC2_KLHL20_DRC7	PF24681	14 - 252	8.9e-06	KLHDC2/KLHL20/DRC7 Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	792
AccBSI	CCGCTC	1 cut(s)	310
AccI	GTMKAC	2 cut(s)	21, 697
AccII	CGCG	5 cut(s)	196, 198, 281, 377, 808
AclWI	GGATC	3 cut(s)	252, 265, 625
AcuI	CTGAAG	1 cut(s)	136
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	3 cut(s)	141, 230, 775
AgsI	TTSAA	4 cut(s)	505, 672, 775, 916
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	2 cut(s)	300, 906
AluI	AGCT	2 cut(s)	300, 906
Alw21I	GWGCWC	2 cut(s)	302, 935
Alw26I	GTCTC	2 cut(s)	477, 565
AlwI	GGATC	3 cut(s)	252, 265, 625
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	4 cut(s)	25, 56, 366, 708
ApaI	GGGCCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	215
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AspLEI	GCGC	3 cut(s)	198, 281, 377
AspS9I	GGNCC	3 cut(s)	56, 57, 366
AsuC2I	CCSGG	2 cut(s)	262, 370
AsuHPI	GGTGA	4 cut(s)	31, 505, 580, 882
AvaI	CYCGRG	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	60, 302
BbsI	GAAGAC	2 cut(s)	619, 869
Bbv12I	GWGCWC	2 cut(s)	302, 935
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	4 cut(s)	341, 490, 740, 858
BceAI	ACGGC	4 cut(s)	40, 412, 448, 908
BciT130I	CCWGG	1 cut(s)	357
BcnI	CCSGG	2 cut(s)	262, 370
BcoDI	GTCTC	2 cut(s)	477, 565
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	2 cut(s)	523, 799
BfuAI	ACCTGC	1 cut(s)	792
BglII	AGATCT	1 cut(s)	872
BisI	GCNGC	5 cut(s)	79, 216, 253, 282, 711
BlsI	GCNGC	5 cut(s)	80, 217, 254, 283, 712
Bme1390I	CCNGG	3 cut(s)	262, 357, 370
BmeT110I	CYCGRG	1 cut(s)	363
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	56, 57, 366
BmiI	GGNNCC	5 cut(s)	58, 59, 82, 222, 259
BmrFI	CCNGG	3 cut(s)	262, 357, 370
BmrI	ACTGGG	2 cut(s)	343, 584
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	2 cut(s)	343, 584
BpiI	GAAGAC	2 cut(s)	619, 869
BpuMI	CCSGG	2 cut(s)	262, 370
BsaAI	YACGTR	1 cut(s)	695
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 104, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 230, 775
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	338, 579
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	357
BseGI	GGATG	4 cut(s)	352, 475, 751, 850
BseLI	CCNNNNNNNGG	3 cut(s)	141, 230, 775
BseMI	GCAATG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	338, 579
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	202
Bsh1236I	CGCG	5 cut(s)	196, 198, 281, 377, 808
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	4 cut(s)	27, 58, 368, 710
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	302, 935
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	4 cut(s)	142, 249, 262, 369
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	3 cut(s)	141, 230, 775
BsmAI	GTCTC	2 cut(s)	477, 565
BsmBI	CGTCTC	1 cut(s)	477
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	4 cut(s)	27, 58, 368, 710
BsoBI	CYCGRG	1 cut(s)	363
Bsp120I	GGGCCC	1 cut(s)	56
Bsp1286I	GDGCHC	3 cut(s)	60, 302, 935
Bsp143I	GATC	6 cut(s)	108, 257, 449, 617, 637, 872
Bsp68I	TCGCGA	1 cut(s)	808
BspANI	GGCC	4 cut(s)	27, 58, 368, 710
BspFNI	CGCG	5 cut(s)	196, 198, 281, 377, 808
BspLI	GGNNCC	5 cut(s)	58, 59, 82, 222, 259
BspMAI	CTGCAG	1 cut(s)	803
BspMI	ACCTGC	1 cut(s)	792
BspPI	GGATC	3 cut(s)	252, 265, 625
BsrBI	CCGCTC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	338, 579
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	6 cut(s)	108, 257, 449, 617, 637, 872
BssNAI	GTATAC	1 cut(s)	698
Bst1107I	GTATAC	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	2 cut(s)	92, 398
BstAPI	GCANNNNNTGC	1 cut(s)	939
BstBAI	YACGTR	1 cut(s)	695
BstC8I	GCNNGC	4 cut(s)	250, 715, 789, 826
BstDEI	CTNAG	1 cut(s)	855
BstENI	CCTNNNNNAGG	1 cut(s)	773
BstF5I	GGATG	4 cut(s)	352, 475, 751, 850
BstFNI	CGCG	5 cut(s)	196, 198, 281, 377, 808
BstHHI	GCGC	3 cut(s)	198, 281, 377
BstKTI	GATC	6 cut(s)	111, 260, 452, 620, 640, 875
BstMAI	GTCTC	2 cut(s)	477, 565
BstMBI	GATC	6 cut(s)	108, 257, 449, 617, 637, 872
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 215, 297, 374, 609, 939
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	2 cut(s)	717, 761
BstSCI	CCNGG	3 cut(s)	260, 355, 368
BstSFI	CTRYAG	2 cut(s)	523, 799
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	5 cut(s)	196, 198, 281, 377, 808
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	2 cut(s)	619, 869
BstX2I	RGATCY	3 cut(s)	257, 617, 872
BstYI	RGATCY	3 cut(s)	257, 617, 872
BstZ17I	GTATAC	1 cut(s)	698
BsuRI	GGCC	4 cut(s)	27, 58, 368, 710
BtgZI	GCGATG	1 cut(s)	618
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	4 cut(s)	352, 475, 751, 850
BtuMI	TCGCGA	1 cut(s)	808
BveI	ACCTGC	1 cut(s)	792
Cac8I	GCNNGC	4 cut(s)	250, 715, 789, 826
CfoI	GCGC	3 cut(s)	198, 281, 377
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	3 cut(s)	56, 57, 366
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	5 cut(s)	631, 664, 714, 758, 867
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	855
DpnI	GATC	6 cut(s)	110, 259, 451, 619, 639, 874
DpnII	GATC	6 cut(s)	108, 257, 449, 617, 637, 872
Eam1104I	CTCTTC	2 cut(s)	92, 398
EarI	CTCTTC	2 cut(s)	92, 398
EciI	GGCGGA	2 cut(s)	121, 270
Ecl136II	GAGCTC	1 cut(s)	300
Eco24I	GRGCYC	2 cut(s)	60, 302
Eco53kI	GAGCTC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	300
EcoNI	CCTNNNNNAGG	1 cut(s)	773
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	2 cut(s)	60, 302
Esp3I	CGTCTC	1 cut(s)	477
FaeI	CATG	5 cut(s)	634, 667, 717, 761, 870
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	5 cut(s)	630, 663, 713, 757, 866
FauI	CCCGC	1 cut(s)	370
FblI	GTMKAC	2 cut(s)	21, 697
Fnu4HI	GCNGC	5 cut(s)	79, 216, 253, 282, 711
FokI	GGATG	4 cut(s)	359, 482, 758, 837
FriOI	GRGCYC	2 cut(s)	60, 302
Fsp4HI	GCNGC	5 cut(s)	79, 216, 253, 282, 711
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	3 cut(s)	197, 280, 376
GluI	GCNGC	5 cut(s)	79, 216, 253, 282, 711
HaeIII	GGCC	4 cut(s)	27, 58, 368, 710
HapII	CCGG	4 cut(s)	142, 249, 262, 369
HgaI	GACGC	1 cut(s)	494
HhaI	GCGC	3 cut(s)	198, 281, 377
Hin1II	CATG	5 cut(s)	634, 667, 717, 761, 870
Hin6I	GCGC	3 cut(s)	196, 279, 375
HinP1I	GCGC	3 cut(s)	196, 279, 375
HinfI	GANTC	4 cut(s)	238, 437, 689, 732
HpaII	CCGG	4 cut(s)	142, 249, 262, 369
HphI	GGTGA	4 cut(s)	31, 505, 580, 882
Hpy166II	GTNNAC	2 cut(s)	22, 698
Hpy188I	TCNGA	3 cut(s)	108, 642, 656
Hpy188III	TCNNGA	3 cut(s)	231, 441, 807
Hpy8I	GTNNAC	2 cut(s)	22, 698
Hpy99I	CGWCG	2 cut(s)	398, 596
HpyAV	CCTTC	2 cut(s)	590, 769
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4IV	ACGT	4 cut(s)	18, 69, 694, 837
HpyCH4V	TGCA	8 cut(s)	9, 33, 341, 717, 725, 757, 801, 814
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 215, 297, 374, 609, 939
HpyF3I	CTNAG	1 cut(s)	855
HpySE526I	ACGT	4 cut(s)	18, 69, 694, 837
Hsp92II	CATG	5 cut(s)	634, 667, 717, 761, 870
HspAI	GCGC	3 cut(s)	196, 279, 375
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	6 cut(s)	108, 257, 449, 617, 637, 872
LmnI	GCTCC	2 cut(s)	86, 307
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	4 cut(s)	18, 69, 694, 837
MaeIII	GTNAC	2 cut(s)	690, 888
MalI	GATC	6 cut(s)	110, 259, 451, 619, 639, 874
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	6 cut(s)	108, 257, 449, 617, 637, 872
MboII	GAAGA	7 cut(s)	79, 153, 415, 517, 619, 871, 874
MflI	RGATCY	3 cut(s)	257, 617, 872
MhlI	GDGCHC	3 cut(s)	60, 302, 935
MluCI	AATT	2 cut(s)	500, 582
MlyI	GAGTC	1 cut(s)	698
MreI	CGCCGGCG	1 cut(s)	248
MroNI	GCCGGC	1 cut(s)	248
MspI	CCGG	4 cut(s)	142, 249, 262, 369
MspR9I	CCNGG	3 cut(s)	262, 357, 370
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	5 cut(s)	196, 198, 281, 377, 808
MwoI	GCNNNNNNNGC	6 cut(s)	193, 215, 297, 374, 609, 939
NaeI	GCCGGC	1 cut(s)	250
NciI	CCSGG	2 cut(s)	262, 370
NdeII	GATC	6 cut(s)	108, 257, 449, 617, 637, 872
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	5 cut(s)	634, 667, 717, 761, 870
NlaIV	GGNNCC	5 cut(s)	58, 59, 82, 222, 259
NmuCI	GTSAC	2 cut(s)	690, 888
NruI	TCGCGA	1 cut(s)	808
NspI	RCATGY	2 cut(s)	717, 761
PaeI	GCATGC	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	238, 437, 732
PkrI	GCNGC	5 cut(s)	80, 217, 254, 283, 712
Ple19I	CGATCG	1 cut(s)	111
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
Ppu21I	YACGTR	1 cut(s)	695
Psp124BI	GAGCTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	5 cut(s)	58, 59, 82, 222, 259
PspOMI	GGGCCC	1 cut(s)	56
PspPI	GGNCC	3 cut(s)	56, 57, 366
PstI	CTGCAG	1 cut(s)	803
PsuI	RGATCY	3 cut(s)	257, 617, 872
PvuI	CGATCG	1 cut(s)	111
RruI	TCGCGA	1 cut(s)	808
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	302
SatI	GCNGC	5 cut(s)	79, 216, 253, 282, 711
Sau3AI	GATC	6 cut(s)	108, 257, 449, 617, 637, 872
Sau96I	GGNCC	3 cut(s)	56, 57, 366
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	3 cut(s)	262, 357, 370
SduI	GDGCHC	3 cut(s)	60, 302, 935
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	2 cut(s)	523, 799
SgrAI	CRCCGGYG	1 cut(s)	248
SphI	GCATGC	1 cut(s)	717
Sse9I	AATT	2 cut(s)	500, 582
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	302
StyD4I	CCNGG	3 cut(s)	260, 355, 368
TaaI	ACNGT	1 cut(s)	677
TaiI	ACGT	4 cut(s)	21, 72, 697, 840
TaqI	TCGA	5 cut(s)	90, 111, 147, 594, 783
TasI	AATT	2 cut(s)	500, 582
TauI	GCSGC	4 cut(s)	81, 255, 284, 713
TfiI	GAWTC	3 cut(s)	238, 437, 732
TseFI	GTSAC	2 cut(s)	690, 888
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	2 cut(s)	690, 888
TspDTI	ATGAA	1 cut(s)	619
TspGWI	ACGGA	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	773
XceI	RCATGY	2 cut(s)	717, 761
XmiI	GTMKAC	2 cut(s)	21, 697
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.