Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Reverse (-)

62929351 .. 62929704

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTGCGAAGGTTCGGATTCCAACCGGATCATCGTCACCGGAGCGGTTCCCGCCACATCATGTTCGGTGCCACGGGAGCAAGATGACCTCGGTCGAGAGAGACGAGTGGGTGGCCATGGAAGGGCTACCGAGCTTTACGGCGGGTGTGTTGGGTTCTTTGTTGGGGATGTGGAGAGAGGAGTTTTGGGTGATGGGCGGTACGGCCGGGCCAAGACTATATCGAGAGGTGGTGCGGTGGACGAGTATTACCGAAATGCGGTGGTGATGGAATTGACAAATCGGAATGGTGGTGGCGGTGGAAGGAGACTAGTGATATGTGGAAAGGAGGGGAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

112

Amino Acids

11.9

Weight (kDa)

8.45

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	44
AciI	CCGC	7 cut(s)	44, 51, 141, 196, 233, 257, 294
AclWI	GGATC	1 cut(s)	35
AcoI	YGGCCR	2 cut(s)	112, 202
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	121, 256
AhlI	ACTAGT	1 cut(s)	307
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	2 cut(s)	94, 298
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	3 cut(s)	112, 202, 207
AspS9I	GGNCC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	28, 200, 274
BalI	TGGCCA	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	67
BccI	CCATC	2 cut(s)	185, 259
BceAI	ACGGC	2 cut(s)	154, 217
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	94, 298
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	48, 69
BmrFI	CCNGG	1 cut(s)	206
BoxI	GACNNNNGTC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	71, 88, 115
BsaWI	WCCGGW	2 cut(s)	24, 38
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 256
BseDI	CCNNGG	3 cut(s)	71, 88, 115
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	121, 256
BseRI	GAGGAG	1 cut(s)	192
BseX3I	CGGCCG	1 cut(s)	202
Bsh1285I	CGRYCG	2 cut(s)	94, 205
BshFI	GGCC	3 cut(s)	114, 204, 209
BshNI	GGYRCC	1 cut(s)	67
BsiEI	CGRYCG	2 cut(s)	94, 205
BsiSI	CCGG	3 cut(s)	25, 39, 205
BslI	CCNNNNNNNGG	2 cut(s)	121, 256
BsmAI	GTCTC	2 cut(s)	94, 298
BsmBI	CGTCTC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	114, 204, 209
Bsp143I	GATC	1 cut(s)	27
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	7 cut(s)	44, 51, 141, 196, 233, 257, 294
BspANI	GGCC	3 cut(s)	114, 204, 209
BspLI	GGNNCC	2 cut(s)	48, 69
BspPI	GGATC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	67
BsrBI	CCGCTC	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	71, 88, 115
BssMI	GATC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	115
BstDSI	CCRYGG	2 cut(s)	71, 115
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	2 cut(s)	94, 298
BstMBI	GATC	1 cut(s)	27
BstMCI	CGRYCG	2 cut(s)	94, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 76
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	204
BstZI	CGGCCG	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	114, 204, 209
BtgI	CCRYGG	2 cut(s)	71, 115
BtsCI	GGATG	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	60, 116
CviJI	RGCY	5 cut(s)	114, 125, 133, 204, 209
CviKI_1	RGCY	5 cut(s)	114, 125, 133, 204, 209
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
EaeI	YGGCCR	2 cut(s)	112, 202
EagI	CGGCCG	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	2 cut(s)	63, 119
FaiI	YATR	4 cut(s)	61, 117, 218, 316
FatI	CATG	2 cut(s)	59, 115
FauI	CCCGC	2 cut(s)	58, 134
FokI	GGATG	1 cut(s)	179
FspBI	CTAG	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	114, 204, 209
HapII	CCGG	3 cut(s)	25, 39, 205
Hin1II	CATG	2 cut(s)	63, 119
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	3 cut(s)	25, 39, 205
HphI	GGTGA	3 cut(s)	28, 200, 274
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	16, 282
Hpy188III	TCNNGA	2 cut(s)	95, 222
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	114, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 76
Hsp92II	CATG	2 cut(s)	63, 119
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	41, 76
LpnPI	CCDG	3 cut(s)	38, 52, 218
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	29
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	1 cut(s)	269
MluNI	TGGCCA	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	4 cut(s)	98, 170, 218, 319
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	3 cut(s)	25, 39, 205
MspR9I	CCNGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	50, 76
NciI	CCSGG	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	2 cut(s)	63, 119
NlaIV	GGNNCC	2 cut(s)	48, 69
NmuCI	GTSAC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	17
PshAI	GACNNNNGTC	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	48, 69
PspPI	GGNCC	1 cut(s)	207
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	4 cut(s)	13, 90, 135, 229
SpeI	ACTAGT	1 cut(s)	307
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	7 cut(s)	44, 51, 141, 196, 233, 257, 294
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	115
TaqI	TCGA	2 cut(s)	94, 221
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.