Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Reverse (-)

8211099 .. 8221779

Gene Structure 10681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGTGGAGGCTGAAGGTTTCAGAAGGAGGAAGAGATGGTAACCCATGGCTCACAAGTGTGAATAATCACATCGGGAGACAATTCTGGGAGTTCGACCCCAATCTCGGAACACCGGAAGAGCGAGCTCAGGTGGAAAAAACACGTCTTGAGTTTCGTAACAATCGTTTTCAATCCGAACATAGTTCTGATCTATTAATGAGACTTCAGTTTGCAAAGGAGAAAGAAAGTGATCGAATTGAGCTACCAGCTCAGGTGAAAATAAAAAGTGAAGAAGAAATTAATGAAGAAGTAGTAGCAATCACATTGAGGAGGGGGTTGAGATTTTACTCGACTCTTCAGGCTGAGGATGGTTTCTGGCCCGGTGACTATGGCGGTCCTTTGTTTCTTCTACCTGGCTTGGTTATTGGATTATCTGTAACAGGGGCCCTTGATGCAATCTTGCCACACGAGCATTCAAAGGAGATCCGCCGCTATCTTTATAACCATCAGAACAAAGATGGTGGTTGGGGACTGCATATAGAAGGGCCAAGTACAATGTTTTGTACAGCTCTGTCCTATGTGAGTCTGAGATTGCTCGGAGAGGAGATGGACGGCGGTGATGGCGGCGCCATGGAGAAGGCCAGAAAATGGATTCTTCACCGTGGAGGAGTTACCACCATCCCATCATGGGGAAAGATGTGGCTCTCAGTACTTGGTGTATATGAATGGGATGGTAACAATCCACTGCCACCTGAATTGTGGCTTTTACCTTACTTTCTTCCAGTACACCCAGGTCGAATGTGGTGTCACTGCAGGATGGTATACCTGCCCATGTCATATTTATACGGCAAGAGATTTGTTGGTCCCATCAACGGCCTTATTTTATCCCTCAGAACGGAGCTTTATACCTTTCCCTATCACCTGATTGATTGGAACCAAGCAAGAAATCTATGTGCCAAGGAGGATTTGTATTACCCACATCCCATTTTACAGGACGTGCTGTGGGGGTGTCTTCATAAGGTTGGGGAACCTCTTCTAATGAGATGGCCATTGTCTAAGCTCAGGCAAAAAGCTCTCACCACCGTAATGGACCACATACACTATGAGGATGAAAACACTCAGTATATCTGCATTGGACCTGTCAATAAGGTACTAAACATGATTTGTTGTTGGGTGGAGGATCAGAATTCAGAAGCATATAAGTGTCATCTTTCAAGAATCAAAGATTATCTATGGGTTGCAGAAGATGGAATGAAAATGCAGGGATATAATGGATCCCAATGCTGGGATGTTGCTTTGGCTGTTCAAGCAATCCTTTCTACCAACCTTGTGAATGAATATGGTTCCGTGCTTAAGAAGGCGCACTATTTCATCAAAAATACTCAAGTTAGGAGAGACAGCTATGGCAATCTTAGTTACTGGTACCGTCACATTTCTAAGGGCGGATGGCCCTTCTCCACTCCAGACAATGGTTGGCCTGTCTCAGATTGTACAGCTGAAGGTTTGAAGGCAGCACTCTTATTATCACATATGCCCTGTGAAATTGTGGGAGAAGCAATATCAGCTGATCAACTGCATGATGCTGTTAATGTAGTATTATCCCTACAGAACAGCAATGGAGGGTTTGCATCATATGAACTCACAAGATCCTATGCCTGGTTGGAGATGATCAATCCAGCTGAAACATTTGGAGATATCGTTATTGATTATCAGTACGTGGAATGCACATCAGCAGCAGTTGAAGGCCTTAAAGCATTCATGAAATTATATCCAGGGCATCGGAAGAAAGAAATAGAAGCATGTATTGCAAAGGCAGTTCAGTTCATCGAGAGCATCCAACTTCCTGATGGCTCATGGTATGGGTCTTGGGGAGTTTGCTACACCTATGGAACATGGTTTGGAATAAAGGGGTTAATGGCTGGTGGCAAGACCTATCAGACAAGTAATAGCATTAGAAGAGCATGTCATTTCTTGCTGTCTAAGCAACTAGATTCAGGTGGCTGGGGAGAGAGCTTTCTTTCATGCCAAAACAAGGTATACACAAATCTCGAAGGGAACAAACCACATATAGTAAACACTGGATGGGCTATGTTGGCTCTAATTGAAGCAGGGCAGGGTGAAAGGGACCCGATCCCCTTGCATCGAGCAGCAAAGGTATTGATCGATTCACAGATGGAAAATGGAGATTTCCCACAACAGCAAATCATGGGAGTCTTCAACAAGAATTGCATGATTAGTTACTCGGGCTACAGAAATATCTTTCCTATCTGGGCACTTGGAGAGTATCGAAACCGGGTACTGGTACTTCACAAATGTATCAATCAAAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

770

Amino Acids

87.81

Weight (kDa)

6.57

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	147 - 407	2e-36	Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C	PF13243	419 - 757	2.1e-52	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
Acc36I	ACCTGC	1 cut(s)	813
Acc65I	GGTACC	1 cut(s)	1401
AccB1I	GGYRCC	2 cut(s)	605, 1401
AccB7I	CCANNNNNTGG	2 cut(s)	627, 1448
AccI	GTMKAC	2 cut(s)	801, 2016
AciI	CCGC	6 cut(s)	372, 466, 469, 594, 603, 1422
AclWI	GGATC	6 cut(s)	457, 1167, 1248, 1261, 1620, 2104
AcoI	YGGCCR	1 cut(s)	1025
AcsI	RAATTY	1 cut(s)	1165
AcuI	CTGAAG	4 cut(s)	32, 188, 320, 1497
AcyI	GRCGYC	1 cut(s)	606
AflII	CTTAAG	1 cut(s)	1331
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	8 cut(s)	170, 456, 1194, 1286, 1486, 1721, 2084, 2197
AjiI	CACGTC	2 cut(s)	143, 976
AjnI	CCWGG	4 cut(s)	391, 769, 1634, 1750
AleI	CACNNNNGTG	1 cut(s)	56
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	4 cut(s)	70, 193, 1368, 1465
AlwI	GGATC	6 cut(s)	457, 1167, 1248, 1261, 1620, 2104
Ama87I	CYCGRG	1 cut(s)	2221
AoxI	GGCC	9 cut(s)	356, 423, 524, 618, 853, 1025, 1427, 1454, 1723
ApaI	GGGCCC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	1490, 1712, 2126
ApoI	RAATTY	1 cut(s)	1165
ArsI	GACNNNNNNTTYG	2 cut(s)	769, 801
AseI	ATTAAT	2 cut(s)	194, 279
Asp700I	GAANNNNTTC	1 cut(s)	1011
Asp718I	GGTACC	1 cut(s)	1401
AspLEI	GCGC	2 cut(s)	608, 1342
AsuC2I	CCSGG	2 cut(s)	360, 2273
AsuHPI	GGTGA	7 cut(s)	265, 374, 608, 629, 890, 1048, 2108
AvaI	CYCGRG	1 cut(s)	2221
AvaII	GGWCC	5 cut(s)	374, 842, 1069, 1115, 2104
BaeGI	GKGCMC	2 cut(s)	427, 2254
BaeI	ACNNNNGTAYC	2 cut(s)	2278, 2311
BalI	TGGCCA	1 cut(s)	1027
BamHI	GGATCC	1 cut(s)	1253
BanI	GGYRCC	2 cut(s)	605, 1401
BanII	GRGCYC	2 cut(s)	127, 427
BarI	GAAGNNNNNNTAC	2 cut(s)	2268, 2300
BauI	CACGAG	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	983, 2185
Bbv12I	GWGCWC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	1502, 1724, 2138
BceAI	ACGGC	3 cut(s)	607, 841, 868
BcgI	CGANNNNNNTGC	2 cut(s)	2098, 2132
BciT130I	CCWGG	4 cut(s)	393, 771, 1636, 1752
BclI	TGATCA	2 cut(s)	1546, 1647
BcnI	CCSGG	2 cut(s)	360, 2273
BcoDI	GTCTC	4 cut(s)	70, 193, 1368, 1465
BfaI	CTAG	1 cut(s)	1967
BfmI	CTRYAG	3 cut(s)	790, 1583, 2227
BfoI	RGCGCY	1 cut(s)	609
BfrI	CTTAAG	1 cut(s)	1331
BfuAI	ACCTGC	1 cut(s)	813
BisI	GCNGC	5 cut(s)	469, 604, 1491, 1713, 2127
BlsI	GCNGC	5 cut(s)	470, 605, 1492, 1714, 2128
BmcAI	AGTACT	1 cut(s)	690
Bme1390I	CCNGG	6 cut(s)	360, 393, 771, 1636, 1752, 2273
Bme18I	GGWCC	5 cut(s)	374, 842, 1069, 1115, 2104
BmeT110I	CYCGRG	1 cut(s)	2221
BmgBI	CACGTC	2 cut(s)	143, 976
BmrFI	CCNGG	6 cut(s)	360, 393, 771, 1636, 1752, 2273
BmsI	GCATC	6 cut(s)	421, 1549, 1616, 1765, 1821, 2128
BpiI	GAAGAC	2 cut(s)	983, 2185
BpmI	CTGGAG	1 cut(s)	1425
Bpu10I	CCTNAGC	4 cut(s)	126, 249, 342, 1040
BpuEI	CTTGAG	2 cut(s)	167, 1347
BpuMI	CCSGG	2 cut(s)	360, 2273
Bsa29I	ATCGAT	1 cut(s)	2142
BsaAI	YACGTR	1 cut(s)	1696
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	6 cut(s)	44, 609, 640, 769, 936, 1751
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	932, 962, 1662, 1692
Bse1I	ACTGG	4 cut(s)	761, 1403, 2062, 2283
Bse3DI	GCAATG	1 cut(s)	1600
BseBI	CCWGG	4 cut(s)	393, 771, 1636, 1752
BseCI	ATCGAT	1 cut(s)	2142
BseDI	CCNNGG	6 cut(s)	44, 609, 640, 769, 936, 1751
BseMI	GCAATG	1 cut(s)	1600
BseMII	CTCAG	9 cut(s)	140, 263, 333, 557, 699, 883, 1054, 1112, 1476
BseNI	ACTGG	4 cut(s)	761, 1403, 2062, 2283
BseRI	GAGGAG	3 cut(s)	322, 596, 660
BseSI	GKGCMC	2 cut(s)	427, 2254
BseXI	GCAGC	3 cut(s)	1502, 1724, 2138
BseYI	CCCAGC	2 cut(s)	1263, 1980
BshFI	GGCC	9 cut(s)	358, 425, 526, 620, 855, 1027, 1429, 1456, 1725
BshNI	GGYRCC	2 cut(s)	605, 1401
BshVI	ATCGAT	1 cut(s)	2142
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	2221
BsiSI	CCGG	3 cut(s)	113, 360, 2272
BslFI	GGGAC	3 cut(s)	522, 828, 2117
BsmAI	GTCTC	4 cut(s)	70, 193, 1368, 1465
BsmFI	GGGAC	3 cut(s)	522, 828, 2117
BsmI	GAATGC	3 cut(s)	451, 1706, 1733
BsnI	GGCC	9 cut(s)	358, 425, 526, 620, 855, 1027, 1429, 1456, 1725
BsoBI	CYCGRG	1 cut(s)	2221
Bsp120I	GGGCCC	1 cut(s)	423
Bsp1286I	GDGCHC	3 cut(s)	127, 427, 2254
Bsp1407I	TGTACA	2 cut(s)	542, 1469
Bsp19I	CCATGG	2 cut(s)	44, 609
BspACI	CCGC	6 cut(s)	372, 466, 469, 594, 603, 1422
BspANI	GGCC	9 cut(s)	358, 425, 526, 620, 855, 1027, 1429, 1456, 1725
BspCNI	CTCAG	9 cut(s)	139, 262, 334, 558, 698, 882, 1053, 1111, 1475
BspDI	ATCGAT	1 cut(s)	2142
BspHI	TCATGA	1 cut(s)	1737
BspMAI	CTGCAG	1 cut(s)	794
BspMI	ACCTGC	1 cut(s)	813
BspPI	GGATC	6 cut(s)	457, 1167, 1248, 1261, 1620, 2104
BspQI	GCTCTTC	2 cut(s)	111, 1930
BspT107I	GGYRCC	2 cut(s)	605, 1401
BspTI	CTTAAG	1 cut(s)	1331
BsrDI	GCAATG	1 cut(s)	1600
BsrGI	TGTACA	2 cut(s)	542, 1469
BsrI	ACTGG	4 cut(s)	761, 1403, 2062, 2283
BssECI	CCNNGG	6 cut(s)	44, 609, 640, 769, 936, 1751
BssNAI	GTATAC	2 cut(s)	802, 2017
BssNI	GRCGYC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	3 cut(s)	44, 609, 936
Bst1107I	GTATAC	2 cut(s)	802, 2017
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	4 cut(s)	393, 771, 1636, 1752
Bst4CI	ACNGT	3 cut(s)	641, 1063, 1406
Bst6I	CTCTTC	5 cut(s)	25, 111, 339, 1017, 1930
BstACI	GRCGYC	1 cut(s)	606
BstAFI	CTTAAG	1 cut(s)	1331
BstAPI	GCANNNNNTGC	1 cut(s)	1784
BstAUI	TGTACA	2 cut(s)	542, 1469
BstBAI	YACGTR	1 cut(s)	1696
BstC8I	GCNNGC	1 cut(s)	123
BstDSI	CCRYGG	3 cut(s)	44, 609, 640
BstEII	GGTNACC	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	2 cut(s)	608, 1342
BstMAI	GTCTC	4 cut(s)	70, 193, 1368, 1465
BstMWI	GCNNNNNNNGC	8 cut(s)	431, 448, 600, 1286, 1541, 1784, 1960, 2072
BstNI	CCWGG	4 cut(s)	393, 771, 1636, 1752
BstNSI	RCATGY	2 cut(s)	1782, 1944
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	6 cut(s)	358, 391, 769, 1634, 1750, 2271
BstSFI	CTRYAG	3 cut(s)	790, 1583, 2227
BstSLI	GKGCMC	2 cut(s)	427, 2254
BstV1I	GCAGC	3 cut(s)	1502, 1724, 2138
BstV2I	GAAGAC	2 cut(s)	983, 2185
BstX2I	RGATCY	3 cut(s)	462, 1253, 1625
BstXI	CCANNNNNNTGG	1 cut(s)	1066
BstYI	RGATCY	3 cut(s)	462, 1253, 1625
BstZ17I	GTATAC	2 cut(s)	802, 2017
Bsu15I	ATCGAT	1 cut(s)	2142
BsuRI	GGCC	9 cut(s)	358, 425, 526, 620, 855, 1027, 1429, 1456, 1725
BsuTUI	ATCGAT	1 cut(s)	2142
BtgI	CCRYGG	3 cut(s)	44, 609, 640
BtrI	CACGTC	2 cut(s)	143, 976
BtsI	GCAGTG	2 cut(s)	722, 787
BtsIMutI	CAGTG	3 cut(s)	722, 787, 2055
BveI	ACCTGC	1 cut(s)	813
Cac8I	GCNNGC	1 cut(s)	123
CciI	TCATGA	1 cut(s)	1737
CfoI	GCGC	2 cut(s)	608, 1342
ClaI	ATCGAT	1 cut(s)	2142
CspCI	CAANNNNNGTGG	4 cut(s)	481, 516, 717, 752
DinI	GGCGCC	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	1025
Eam1104I	CTCTTC	5 cut(s)	25, 111, 339, 1017, 1930
EarI	CTCTTC	5 cut(s)	25, 111, 339, 1017, 1930
EciI	GGCGGA	2 cut(s)	455, 1437
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	3 cut(s)	44, 609, 936
Eco147I	AGGCCT	1 cut(s)	1725
Eco24I	GRGCYC	2 cut(s)	127, 427
Eco32I	GATATC	1 cut(s)	1675
Eco47I	GGWCC	5 cut(s)	374, 842, 1069, 1115, 2104
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	4 cut(s)	32, 188, 320, 1497
Eco88I	CYCGRG	1 cut(s)	2221
Eco91I	GGTNACC	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	125
EcoO109I	RGGNCCY	3 cut(s)	423, 424, 2104
EcoO65I	GGTNACC	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	1165
EcoRII	CCWGG	4 cut(s)	391, 769, 1634, 1750
EcoRV	GATATC	1 cut(s)	1675
EcoT14I	CCWWGG	3 cut(s)	44, 609, 936
EcoT38I	GRGCYC	2 cut(s)	127, 427
EgeI	GGCGCC	1 cut(s)	607
EheI	GGCGCC	1 cut(s)	607
ErhI	CCWWGG	3 cut(s)	44, 609, 936
FalI	AAGNNNNNCTT	2 cut(s)	1278, 1310
FaqI	GGGAC	3 cut(s)	522, 828, 2117
FauNDI	CATATG	2 cut(s)	1509, 1612
FbaI	TGATCA	2 cut(s)	1546, 1647
FblI	GTMKAC	2 cut(s)	801, 2016
Fnu4HI	GCNGC	5 cut(s)	469, 604, 1491, 1713, 2127
FriOI	GRGCYC	2 cut(s)	127, 427
Fsp4HI	GCNGC	5 cut(s)	469, 604, 1491, 1713, 2127
FspBI	CTAG	1 cut(s)	1967
GlaI	GCGC	2 cut(s)	607, 1341
GluI	GCNGC	5 cut(s)	469, 604, 1491, 1713, 2127
GsaI	CCCAGC	2 cut(s)	1267, 1984
GsuI	CTGGAG	1 cut(s)	1425
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	9 cut(s)	358, 425, 526, 620, 855, 1027, 1429, 1456, 1725
HapII	CCGG	3 cut(s)	113, 360, 2272
HhaI	GCGC	2 cut(s)	608, 1342
Hin1I	GRCGYC	1 cut(s)	606
Hin6I	GCGC	2 cut(s)	606, 1340
HinP1I	GCGC	2 cut(s)	606, 1340
HinfI	GANTC	7 cut(s)	331, 562, 631, 1197, 1970, 2144, 2190
HpaII	CCGG	3 cut(s)	113, 360, 2272
HphI	GGTGA	7 cut(s)	265, 374, 608, 629, 890, 1048, 2108
Hpy166II	GTNNAC	4 cut(s)	766, 802, 2017, 2053
Hpy188III	TCNNGA	8 cut(s)	73, 146, 1194, 1442, 1738, 1807, 1823, 2027
Hpy8I	GTNNAC	4 cut(s)	766, 802, 2017, 2053
HpyCH4III	ACNGT	3 cut(s)	641, 1063, 1406
HpyCH4IV	ACGT	3 cut(s)	142, 975, 1695
HpyF10VI	GCNNNNNNNGC	8 cut(s)	431, 448, 600, 1286, 1541, 1784, 1960, 2072
HpySE526I	ACGT	3 cut(s)	142, 975, 1695
Hsp92I	GRCGYC	1 cut(s)	606
HspAI	GCGC	2 cut(s)	606, 1340
KasI	GGCGCC	1 cut(s)	605
KflI	GGGWCCC	1 cut(s)	2104
KpnI	GGTACC	1 cut(s)	1405
Ksp22I	TGATCA	2 cut(s)	1546, 1647
LguI	GCTCTTC	2 cut(s)	111, 1930
LmnI	GCTCC	1 cut(s)	877
Lsp1109I	GCAGC	3 cut(s)	1502, 1724, 2138
LweI	GCATC	6 cut(s)	421, 1549, 1616, 1765, 1821, 2128
MaeI	CTAG	1 cut(s)	1967
MaeII	ACGT	3 cut(s)	142, 975, 1695
MflI	RGATCY	3 cut(s)	462, 1253, 1625
MhlI	GDGCHC	3 cut(s)	127, 427, 2254
MlsI	TGGCCA	1 cut(s)	1027
MluCI	AATT	9 cut(s)	80, 234, 276, 734, 1165, 1521, 1742, 2079, 2203
MluNI	TGGCCA	1 cut(s)	1027
Mly113I	GGCGCC	1 cut(s)	606
MlyI	GAGTC	3 cut(s)	325, 571, 2199
MmeI	TCCRAC	2 cut(s)	1620, 1840
Mox20I	TGGCCA	1 cut(s)	1027
MroXI	GAANNNNTTC	1 cut(s)	1011
MscI	TGGCCA	1 cut(s)	1027
MseI	TTAA	6 cut(s)	194, 279, 1332, 1566, 1728, 1892
MslI	CAYNNNNRTG	3 cut(s)	56, 1064, 1180
Msp20I	TGGCCA	1 cut(s)	1027
MspA1I	CMGCKG	3 cut(s)	1475, 1544, 1658
MspCI	CTTAAG	1 cut(s)	1331
MspI	CCGG	3 cut(s)	113, 360, 2272
MspR9I	CCNGG	6 cut(s)	360, 393, 771, 1636, 1752, 2273
Mva1269I	GAATGC	3 cut(s)	451, 1706, 1733
MvaI	CCWGG	4 cut(s)	393, 771, 1636, 1752
MwoI	GCNNNNNNNGC	8 cut(s)	431, 448, 600, 1286, 1541, 1784, 1960, 2072
NarI	GGCGCC	1 cut(s)	606
NciI	CCSGG	2 cut(s)	360, 2273
NcoI	CCATGG	2 cut(s)	44, 609
NdeI	CATATG	2 cut(s)	1509, 1612
NmuCI	GTSAC	3 cut(s)	362, 785, 1406
NspI	RCATGY	2 cut(s)	1782, 1944
OliI	CACNNNNGTG	1 cut(s)	56
PagI	TCATGA	1 cut(s)	1737
PceI	AGGCCT	1 cut(s)	1725
PciSI	GCTCTTC	2 cut(s)	111, 1930
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PctI	GAATGC	3 cut(s)	451, 1706, 1733
PdmI	GAANNNNTTC	1 cut(s)	1011
PfeI	GAWTC	4 cut(s)	631, 1197, 1970, 2144
PflMI	CCANNNNNTGG	2 cut(s)	627, 1448
PkrI	GCNGC	5 cut(s)	470, 605, 1492, 1714, 2128
PleI	GAGTC	3 cut(s)	325, 570, 2198
PluTI	GGCGCC	1 cut(s)	609
PpsI	GAGTC	3 cut(s)	325, 570, 2198
Ppu21I	YACGTR	1 cut(s)	1696
PpuMI	RGGWCCY	1 cut(s)	2104
PshBI	ATTAAT	2 cut(s)	194, 279
PsiI	TTATAA	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	2104
Psp6I	CCWGG	4 cut(s)	391, 769, 1634, 1750
PspEI	GGTNACC	1 cut(s)	38
PspFI	CCCAGC	2 cut(s)	1263, 1980
PspGI	CCWGG	4 cut(s)	391, 769, 1634, 1750
PspOMI	GGGCCC	1 cut(s)	423
PspPPI	RGGWCCY	1 cut(s)	2104
PstI	CTGCAG	1 cut(s)	794
PsuI	RGATCY	3 cut(s)	462, 1253, 1625
PvuII	CAGCTG	3 cut(s)	1475, 1544, 1658
RseI	CAYNNNNRTG	3 cut(s)	56, 1064, 1180
SacI	GAGCTC	1 cut(s)	127
SapI	GCTCTTC	2 cut(s)	111, 1930
SaqAI	TTAA	6 cut(s)	194, 279, 1332, 1566, 1728, 1892
SatI	GCNGC	5 cut(s)	469, 604, 1491, 1713, 2127
ScaI	AGTACT	1 cut(s)	690
SchI	GAGTC	3 cut(s)	325, 571, 2199
ScrFI	CCNGG	6 cut(s)	360, 393, 771, 1636, 1752, 2273
SduI	GDGCHC	3 cut(s)	127, 427, 2254
SfaNI	GCATC	6 cut(s)	421, 1549, 1616, 1765, 1821, 2128
SfcI	CTRYAG	3 cut(s)	790, 1583, 2227
SfoI	GGCGCC	1 cut(s)	607
SinI	GGWCC	5 cut(s)	374, 842, 1069, 1115, 2104
SmiMI	CAYNNNNRTG	3 cut(s)	56, 1064, 1180
SmlI	CTYRAG	3 cut(s)	146, 1331, 1362
SmoI	CTYRAG	3 cut(s)	146, 1331, 1362
Sse9I	AATT	9 cut(s)	80, 234, 276, 734, 1165, 1521, 1742, 2079, 2203
SseBI	AGGCCT	1 cut(s)	1725
SsiI	CCGC	6 cut(s)	372, 466, 469, 594, 603, 1422
SspDI	GGCGCC	1 cut(s)	605
SspMI	CTAG	1 cut(s)	1967
SstI	GAGCTC	1 cut(s)	127
StuI	AGGCCT	1 cut(s)	1725
StyD4I	CCNGG	6 cut(s)	358, 391, 769, 1634, 1750, 2271
StyI	CCWWGG	3 cut(s)	44, 609, 936
TaaI	ACNGT	3 cut(s)	641, 1063, 1406
TaiI	ACGT	3 cut(s)	145, 978, 1698
TaqI	TCGA	9 cut(s)	93, 232, 329, 775, 1806, 2028, 2122, 2142, 2266
TasI	AATT	9 cut(s)	80, 234, 276, 734, 1165, 1521, 1742, 2079, 2203
TatI	WGTACW	5 cut(s)	530, 542, 688, 763, 1469
TauI	GCSGC	2 cut(s)	471, 606
TfiI	GAWTC	4 cut(s)	631, 1197, 1970, 2144
Tru1I	TTAA	6 cut(s)	194, 279, 1332, 1566, 1728, 1892
Tru9I	TTAA	6 cut(s)	194, 279, 1332, 1566, 1728, 1892
TscAI	CASTG	3 cut(s)	729, 794, 2062
TseFI	GTSAC	3 cut(s)	362, 785, 1406
TseI	GCWGC	3 cut(s)	1490, 1712, 2126
Tsp45I	GTSAC	3 cut(s)	362, 785, 1406
TspGWI	ACGGA	2 cut(s)	890, 1315
TspRI	CASTG	3 cut(s)	729, 794, 2062
Van91I	CCANNNNNTGG	2 cut(s)	627, 1448
Vha464I	CTTAAG	1 cut(s)	1331
VpaK11BI	GGWCC	5 cut(s)	374, 842, 1069, 1115, 2104
VspI	ATTAAT	2 cut(s)	194, 279
XapI	RAATTY	1 cut(s)	1165
XceI	RCATGY	2 cut(s)	1782, 1944
XcmI	CCANNNNNNNNNTGG	4 cut(s)	735, 777, 1449, 1823
XmiI	GTMKAC	2 cut(s)	801, 2016
XmnI	GAANNNNTTC	1 cut(s)	1011
XspI	CTAG	1 cut(s)	1967
ZrmI	AGTACT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.