Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Forward (+)

8270299 .. 8270793

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0053200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGGCAGTGCATGACTTTCTTGTATAAATTGATCGACAACTACCCTCTAGTATGCACAATATCATCCTTGCGAAACAAAACACAAAAGAACAAGATGAATCAGATATTGATAGTATTGTTCATCCTCTTGCTCACTAAGACTGAGGCTGCTTGGAATTCCAGACATGTTGAAATTATCAATGATTTGGATCCAAATACATGTCTTACCATTCATTGCAAGTCTAAGGATGATGATCTGGGAGTCCATCTGCTTCACTTTCAAGAGTCCTATTGGATCAATTTCAAAATAAACATTTTCGGAGGTACACTATTCTTTTGCAGCTTCCAGTGGCCCGACAATTTTCATCACCTTGATGTTTACAATCAAGAGAGAGACAATGTACCCCCTAAAGAATGTAGGACATGCAGATACATGATCAGATCTGATGGTGGACATAGGTACAATGAGGAATTCCAAGATTTCACTGATTTTTTCAAGTGGAACGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

19.73

Weight (kDa)

6.64

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	56 - 161	1.8e-25	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	185, 198, 284
AcsI	RAATTY	2 cut(s)	157, 452
AfaI	GTAC	3 cut(s)	307, 384, 443
AflIII	ACRYGT	2 cut(s)	166, 200
AgsI	TTSAA	4 cut(s)	173, 263, 286, 478
AluBI	AGCT	1 cut(s)	324
AluI	AGCT	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	3 cut(s)	185, 198, 284
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	2 cut(s)	149, 321
ApoI	RAATTY	2 cut(s)	157, 452
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	190
BbvI	GCAGC	2 cut(s)	136, 333
BccI	CCATC	2 cut(s)	255, 422
BclI	TGATCA	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	422
BisI	GCNGC	2 cut(s)	150, 322
BlsI	GCNGC	2 cut(s)	151, 323
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	192
BsaBI	GATNNNNATC	2 cut(s)	189, 234
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	214
Bse8I	GATNNNNATC	2 cut(s)	189, 234
BseGI	GGATG	3 cut(s)	65, 123, 235
BseJI	GATNNNNATC	2 cut(s)	189, 234
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	136, 333
BshFI	GGCC	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	334
Bsp143I	GATC	6 cut(s)	33, 190, 235, 276, 417, 422
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	3 cut(s)	185, 198, 284
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	328
BssMI	GATC	6 cut(s)	33, 190, 235, 276, 417, 422
BstDEI	CTNAG	3 cut(s)	138, 144, 225
BstF5I	GGATG	3 cut(s)	65, 123, 235
BstKTI	GATC	6 cut(s)	36, 193, 238, 279, 420, 425
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	6 cut(s)	33, 190, 235, 276, 417, 422
BstNSI	RCATGY	3 cut(s)	170, 204, 408
BstV1I	GCAGC	2 cut(s)	136, 333
BstX2I	RGATCY	2 cut(s)	190, 422
BstYI	RGATCY	2 cut(s)	190, 422
BsuRI	GGCC	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	65, 123, 235
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	3 cut(s)	14, 335, 465
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	3 cut(s)	306, 383, 442
CviAII	CATG	5 cut(s)	13, 167, 201, 405, 415
CviJI	RGCY	3 cut(s)	149, 324, 334
CviKI_1	RGCY	3 cut(s)	149, 324, 334
CviQI	GTAC	3 cut(s)	306, 383, 442
DdeI	CTNAG	3 cut(s)	138, 144, 225
DpnI	GATC	6 cut(s)	35, 192, 237, 278, 419, 424
DpnII	GATC	6 cut(s)	33, 190, 235, 276, 417, 422
EcoRI	GAATTC	2 cut(s)	157, 452
FaeI	CATG	5 cut(s)	16, 170, 204, 408, 418
FaiI	YATR	8 cut(s)	14, 27, 55, 168, 202, 406, 416, 438
FatI	CATG	5 cut(s)	12, 166, 200, 404, 414
FbaI	TGATCA	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	150, 322
FokI	GGATG	3 cut(s)	52, 110, 242
Fsp4HI	GCNGC	2 cut(s)	150, 322
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	2 cut(s)	150, 322
HaeIII	GGCC	1 cut(s)	334
Hin1II	CATG	5 cut(s)	16, 170, 204, 408, 418
HinfI	GANTC	3 cut(s)	100, 243, 266
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	308, 361, 434
Hpy188I	TCNGA	4 cut(s)	105, 302, 422, 427
Hpy188III	TCNNGA	3 cut(s)	162, 263, 368
Hpy8I	GTNNAC	3 cut(s)	308, 361, 434
HpyCH4V	TGCA	5 cut(s)	12, 57, 219, 321, 408
HpyF3I	CTNAG	3 cut(s)	138, 144, 225
Hsp92II	CATG	5 cut(s)	16, 170, 204, 408, 418
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	6 cut(s)	33, 190, 235, 276, 417, 422
LpnPI	CCDG	3 cut(s)	175, 224, 341
Lsp1109I	GCAGC	2 cut(s)	136, 333
MaeI	CTAG	1 cut(s)	50
MalI	GATC	6 cut(s)	35, 192, 237, 278, 419, 424
MboI	GATC	6 cut(s)	33, 190, 235, 276, 417, 422
MflI	RGATCY	2 cut(s)	190, 422
MluCI	AATT	6 cut(s)	29, 157, 174, 280, 340, 452
MlyI	GAGTC	2 cut(s)	252, 275
MnlI	CCTC	5 cut(s)	57, 137, 139, 296, 442
MslI	CAYNNNNRTG	1 cut(s)	354
NdeII	GATC	6 cut(s)	33, 190, 235, 276, 417, 422
NlaIII	CATG	5 cut(s)	16, 170, 204, 408, 418
NlaIV	GGNNCC	1 cut(s)	192
NspI	RCATGY	3 cut(s)	170, 204, 408
PciI	ACATGT	2 cut(s)	166, 200
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	151, 323
PleI	GAGTC	2 cut(s)	251, 274
PpsI	GAGTC	2 cut(s)	251, 274
PscI	ACATGT	2 cut(s)	166, 200
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	333
PsuI	RGATCY	2 cut(s)	190, 422
RsaI	GTAC	3 cut(s)	307, 384, 443
RsaNI	GTAC	3 cut(s)	306, 383, 442
RseI	CAYNNNNRTG	1 cut(s)	354
SatI	GCNGC	2 cut(s)	150, 322
Sau3AI	GATC	6 cut(s)	33, 190, 235, 276, 417, 422
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	2 cut(s)	252, 275
SetI	ASST	4 cut(s)	307, 326, 354, 443
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	6 cut(s)	29, 157, 174, 280, 340, 452
SspMI	CTAG	1 cut(s)	50
TaqI	TCGA	1 cut(s)	36
TasI	AATT	6 cut(s)	29, 157, 174, 280, 340, 452
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	3 cut(s)	14, 335, 472
TseI	GCWGC	2 cut(s)	149, 321
TspDTI	ATGAA	4 cut(s)	112, 113, 203, 335
TspRI	CASTG	3 cut(s)	14, 335, 472
XapI	RAATTY	2 cut(s)	157, 452
XceI	RCATGY	3 cut(s)	170, 204, 408
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.