Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Forward (+)

8286731 .. 8287504

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTTGAAAAGACGTCTGCCTTTCTCTCTCTCAACCCTAGCGGCGCCGTCAGGAGGCGCTGAGCATGAAGATGGCGAATTTTGTCGCCGGCGTATGGTGCGTCGAACTAGCTTCGGCGTCGTTTTTCTCCTTCTGTTTTTTGTGTGGTTGGGTTGTCAAAGCTTAGCTCAGATTTCGATCGCCCCTCTCCGATCCCTTACTGTAGATCTGACCCTAAGGGAGAATATCTATACTGGGGAGTGCTTGGTCTCTTGGGCTAAGGATGGTGGGACAGCGCATGCTGTATGGATGTGGCCTCCAGGCGGTTTGGCTCGACGGTGGAATATAGGTGTTGGTGGACTCACTCTGTCTGTTCCGAGTCGTGGAAATAAAGACCCAGTTGGGGTGGCAGCCTGGCTTAGGAAGAAAGTGGCGCAGAAGAGTGATGGCGGTACAGGAGAACCCTGGCTGAGGCTAATGGCTGAGATGGATGACGATGCTGGGCTGGGCATCAACGCTGACTCCAGGTTGAGACGCGATTGGGTGCATAGAGCAATTGGGCAGCCCAATACCTGCAGGAGAATCAAGGGTGCAATTTATGGTAGGGCTATTGTGAGCTCTATCATAAGGAATGTTGCTACAATGAGCCAACCTAGAGGAAGTGATACTGATTCCGACGAGAAGACTACAAACAAGAGCCGAAAGAGCGACCTGATGCCGAGGTTGTTGGCTACTGAAGAGGTTGAGAAGGATGCTGATTCCAACCCTCCGGGGAAGGAACTAACACTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.26

Weight (kDa)

9.68

Isoelectric Point (pI)

59.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	560
AccB1I	GGYRCC	1 cut(s)	43
AccII	CGCG	1 cut(s)	516
AciI	CCGC	3 cut(s)	41, 303, 429
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	735
AcyI	GRCGYC	3 cut(s)	13, 44, 117
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	7 cut(s)	53, 94, 302, 362, 382, 399, 450
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	4 cut(s)	298, 392, 443, 503
AluBI	AGCT	4 cut(s)	111, 162, 167, 597
AluI	AGCT	4 cut(s)	111, 162, 167, 597
Alw21I	GWGCWC	1 cut(s)	599
Alw26I	GTCTC	2 cut(s)	253, 505
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	389, 541
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	4 cut(s)	46, 59, 277, 415
AsuC2I	CCSGG	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	599
BbvCI	CCTCAGC	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	401, 553
BccI	CCATC	4 cut(s)	65, 257, 419, 460
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	4 cut(s)	300, 394, 445, 505
BcnI	CCSGG	1 cut(s)	750
BcoDI	GTCTC	2 cut(s)	253, 505
BfaI	CTAG	3 cut(s)	38, 108, 633
BfmI	CTRYAG	2 cut(s)	201, 553
BfoI	RGCGCY	2 cut(s)	47, 60
BfuAI	ACCTGC	1 cut(s)	560
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	3 cut(s)	42, 390, 542
BlpI	GCTNAGC	2 cut(s)	60, 163
BlsI	GCNGC	3 cut(s)	43, 391, 543
Bme1390I	CCNGG	5 cut(s)	300, 394, 445, 505, 750
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	5 cut(s)	300, 394, 445, 505, 750
BmrI	ACTGGG	2 cut(s)	243, 371
BmsI	GCATC	4 cut(s)	466, 498, 684, 721
BmuI	ACTGGG	2 cut(s)	243, 371
BpiI	GAAGAC	1 cut(s)	668
BpmI	CTGGAG	2 cut(s)	282, 487
Bpu10I	CCTNAGC	3 cut(s)	258, 398, 449
Bpu1102I	GCTNAGC	2 cut(s)	60, 163
BpuMI	CCSGG	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	3 cut(s)	13, 44, 117
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	443, 698, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	7 cut(s)	53, 94, 302, 362, 382, 399, 450
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	238, 377
Bse21I	CCTNAGG	1 cut(s)	215
Bse8I	GATNNNNATC	1 cut(s)	176
BseBI	CCWGG	4 cut(s)	300, 394, 445, 505
BseDI	CCNNGG	3 cut(s)	443, 698, 749
BseGI	GGATG	4 cut(s)	268, 294, 475, 736
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	7 cut(s)	53, 94, 302, 362, 382, 399, 450
BseMII	CTCAG	4 cut(s)	51, 182, 440, 453
BseNI	ACTGG	2 cut(s)	238, 377
BseXI	GCAGC	2 cut(s)	401, 553
BseYI	CCCAGC	2 cut(s)	479, 484
Bsh1236I	CGCG	1 cut(s)	516
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	295
BshNI	GGYRCC	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	599
BsiSI	CCGG	2 cut(s)	88, 749
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	7 cut(s)	53, 94, 302, 362, 382, 399, 450
BsmAI	GTCTC	2 cut(s)	253, 505
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	295
Bso31I	GGTCTC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp143I	GATC	3 cut(s)	177, 191, 205
Bsp1720I	GCTNAGC	2 cut(s)	60, 163
BspACI	CCGC	3 cut(s)	41, 303, 429
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	4 cut(s)	52, 181, 441, 454
BspFNI	CGCG	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	557
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	238, 377
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	3 cut(s)	443, 698, 749
BssMI	GATC	3 cut(s)	177, 191, 205
BssNI	GRCGYC	3 cut(s)	13, 44, 117
Bst2UI	CCWGG	4 cut(s)	300, 394, 445, 505
Bst4CI	ACNGT	2 cut(s)	202, 318
Bst6I	CTCTTC	2 cut(s)	413, 711
BstACI	GRCGYC	3 cut(s)	13, 44, 117
BstC8I	GCNNGC	2 cut(s)	89, 279
BstDEI	CTNAG	8 cut(s)	60, 163, 168, 215, 258, 398, 449, 462
BstENI	CCTNNNNNAGG	2 cut(s)	397, 448
BstF5I	GGATG	4 cut(s)	268, 294, 475, 736
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	2 cut(s)	47, 60
BstHHI	GCGC	4 cut(s)	46, 59, 277, 415
BstKTI	GATC	3 cut(s)	180, 194, 208
BstMAI	GTCTC	2 cut(s)	253, 505
BstMBI	GATC	3 cut(s)	177, 191, 205
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 684
BstNI	CCWGG	4 cut(s)	300, 394, 445, 505
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	5 cut(s)	298, 392, 443, 503, 748
BstSFI	CTRYAG	2 cut(s)	201, 553
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	401, 553
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	295
BtsCI	GGATG	4 cut(s)	268, 294, 475, 736
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	2 cut(s)	89, 279
CfoI	GCGC	4 cut(s)	46, 59, 277, 415
Cfr10I	RCCGGY	1 cut(s)	87
CseI	GACGC	3 cut(s)	89, 106, 522
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	2 cut(s)	65, 278
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	8 cut(s)	60, 163, 168, 215, 258, 398, 449, 462
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	3 cut(s)	179, 193, 207
DpnII	GATC	3 cut(s)	177, 191, 205
Eam1104I	CTCTTC	2 cut(s)	413, 711
EarI	CTCTTC	2 cut(s)	413, 711
Ecl136II	GAGCTC	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	597
Eco57I	CTGAAG	1 cut(s)	735
Eco81I	CCTNAGG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	597
EcoNI	CCTNNNNNAGG	2 cut(s)	397, 448
EcoRII	CCWGG	4 cut(s)	298, 392, 443, 503
EcoT38I	GRGCYC	1 cut(s)	599
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	505
FaeI	CATG	2 cut(s)	68, 281
FaiI	YATR	9 cut(s)	66, 95, 231, 279, 286, 326, 528, 579, 605
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	2 cut(s)	64, 277
Fnu4HI	GCNGC	3 cut(s)	42, 390, 542
FokI	GGATG	4 cut(s)	275, 301, 482, 743
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	3 cut(s)	42, 390, 542
FspBI	CTAG	3 cut(s)	38, 108, 633
GlaI	GCGC	4 cut(s)	45, 58, 276, 414
GluI	GCNGC	3 cut(s)	42, 390, 542
GsaI	CCCAGC	2 cut(s)	483, 488
GsuI	CTGGAG	2 cut(s)	282, 487
HaeII	RGCGCY	2 cut(s)	47, 60
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	2 cut(s)	88, 749
HgaI	GACGC	3 cut(s)	89, 106, 522
HhaI	GCGC	4 cut(s)	46, 59, 277, 415
Hin1I	GRCGYC	3 cut(s)	13, 44, 117
Hin1II	CATG	2 cut(s)	68, 281
Hin6I	GCGC	4 cut(s)	44, 57, 275, 413
HinP1I	GCGC	4 cut(s)	44, 57, 275, 413
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	6 cut(s)	339, 358, 500, 561, 650, 737
HpaII	CCGG	2 cut(s)	88, 749
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	5 cut(s)	171, 191, 210, 357, 655
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	338
Hpy99I	CGWCG	4 cut(s)	105, 122, 318, 659
HpyAV	CCTTC	3 cut(s)	140, 721, 748
HpyCH4III	ACNGT	2 cut(s)	202, 318
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	3 cut(s)	526, 555, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 684
HpyF3I	CTNAG	8 cut(s)	60, 163, 168, 215, 258, 398, 449, 462
HpySE526I	ACGT	1 cut(s)	13
Hsp92I	GRCGYC	3 cut(s)	13, 44, 117
Hsp92II	CATG	2 cut(s)	68, 281
HspAI	GCGC	4 cut(s)	44, 57, 275, 413
KasI	GGCGCC	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	87
KroNI	GCCGGC	1 cut(s)	89
Kzo9I	GATC	3 cut(s)	177, 191, 205
Lsp1109I	GCAGC	2 cut(s)	401, 553
LweI	GCATC	4 cut(s)	466, 498, 684, 721
MaeI	CTAG	3 cut(s)	38, 108, 633
MaeII	ACGT	1 cut(s)	13
MalI	GATC	3 cut(s)	179, 193, 207
MboI	GATC	3 cut(s)	177, 191, 205
MboII	GAAGA	5 cut(s)	80, 415, 430, 673, 728
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	599
MluCI	AATT	3 cut(s)	77, 534, 573
Mly113I	GGCGCC	1 cut(s)	44
MlyI	GAGTC	3 cut(s)	333, 367, 494
MmeI	TCCRAC	2 cut(s)	678, 765
MnlI	CCTC	8 cut(s)	47, 195, 306, 444, 629, 693, 712, 756
MreI	CGCCGGCG	1 cut(s)	87
MroNI	GCCGGC	1 cut(s)	87
MseI	TTAA	1 cut(s)	772
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	2 cut(s)	88, 749
MspR9I	CCNGG	5 cut(s)	300, 394, 445, 505, 750
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	4 cut(s)	300, 394, 445, 505
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	2 cut(s)	97, 684
NaeI	GCCGGC	1 cut(s)	89
NarI	GGCGCC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	750
NdeII	GATC	3 cut(s)	177, 191, 205
NgoMIV	GCCGGC	1 cut(s)	87
NlaIII	CATG	2 cut(s)	68, 281
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	723
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PdiI	GCCGGC	1 cut(s)	89
PfeI	GAWTC	3 cut(s)	561, 650, 737
PkrI	GCNGC	3 cut(s)	43, 391, 543
Ple19I	CGATCG	1 cut(s)	180
PleI	GAGTC	3 cut(s)	333, 366, 494
PluTI	GGCGCC	1 cut(s)	47
PpsI	GAGTC	3 cut(s)	333, 366, 494
Psp124BI	GAGCTC	1 cut(s)	599
Psp6I	CCWGG	4 cut(s)	298, 392, 443, 503
PspFI	CCCAGC	2 cut(s)	479, 484
PspGI	CCWGG	4 cut(s)	298, 392, 443, 503
PspN4I	GGNNCC	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	205
PvuI	CGATCG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	599
SaqAI	TTAA	1 cut(s)	772
SatI	GCNGC	3 cut(s)	42, 390, 542
Sau3AI	GATC	3 cut(s)	177, 191, 205
SbfI	CCTGCAGG	1 cut(s)	557
SchI	GAGTC	3 cut(s)	333, 367, 494
ScrFI	CCNGG	5 cut(s)	300, 394, 445, 505, 750
SdaI	CCTGCAGG	1 cut(s)	557
SduI	GDGCHC	1 cut(s)	599
SfaNI	GCATC	4 cut(s)	466, 498, 684, 721
SfcI	CTRYAG	2 cut(s)	201, 553
SfoI	GGCGCC	1 cut(s)	45
SgrAI	CRCCGGYG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	69
SphI	GCATGC	1 cut(s)	281
Sse8387I	CCTGCAGG	1 cut(s)	557
Sse9I	AATT	3 cut(s)	77, 534, 573
SsiI	CCGC	3 cut(s)	41, 303, 429
SspDI	GGCGCC	1 cut(s)	43
SspMI	CTAG	3 cut(s)	38, 108, 633
SstI	GAGCTC	1 cut(s)	599
StyD4I	CCNGG	5 cut(s)	298, 392, 443, 503, 748
TaaI	ACNGT	2 cut(s)	202, 318
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	3 cut(s)	103, 176, 313
TasI	AATT	3 cut(s)	77, 534, 573
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	561, 650, 737
Tru1I	TTAA	1 cut(s)	772
Tru9I	TTAA	1 cut(s)	772
TseI	GCWGC	2 cut(s)	389, 541
TspDTI	ATGAA	1 cut(s)	81
XagI	CCTNNNNNAGG	2 cut(s)	397, 448
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	3 cut(s)	38, 108, 633
ZraI	GACGTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.