Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Forward (+)

32218585 .. 32221865

Gene Structure 3281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1260800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGATGCGGCATGGTCCATTGCCCGGGTTAGGGCCTACTACTGGCCACCAATCATTTGAGTCGCTACCCCATCCTGAACTATTGGAAAATAAAATTGCATATCAAGCAGCAGAGATAAAACAACTGGCAGGAGACAATAATAGATTGGCAGCTTCTCATGTGGATTTAAGGCGGGATCTTGTAGCTGCAGAGGAGGATGTAGAAAGACTTAAGGCACACATGAGAAGCATCCAGACTGAGAGTGACATTCAGATCCGGGTTTTGCTTGATAAGATTGCAAAACGGGAAGCAGACATAAAGGCTGGTGAGGGTGTGAAGAAGGAATTGCAAAGGGCTCACATGGAAGCACAGAGCTTGTTTATAGCACGACAAGAGCTGACCATTAAAATTCAACAGGCCAAAGAGGAATTGCAGAAGGCTCGACTGGATGTTCAGAAACTACCAGATTTGAATGCTGAACTTGACAGCTTGAGGGAAGAACACCAGAGGCTGCGTTCTACTTTTGAATATGAGAAGGGTTTAAACATAGAGCAAGTTGTGCAAATGAAAGCAATGGAGAAGAAGCTAATTGGGATGGCTAGAGAAGTAGAAAGGTTGCGTGACGAGGTCCTGAATTCCGAGAAAAGAGAACATGCACCAAACACACATACTGGTGGTTACACAAATCCACATTCGCATTTCCCACATAATATCCAAGGTGGTAGTGCGAATTTTGATGGTTATGGGAGGCCTTATGTTTCTTTCGGTATTCGGCCACCAGGAGATGGAACAGTTCCATATGGCAGCAGCAGCTACGTAGCTGCTGGTGTAGGTGTCCCAACTGCTGCTGCTGGTGCTATTTGGGGAGCAGCTTATGATCCCTCGCTTGATGCAGCTGCCCCTAGCTCTGGGGTTGGTGCTGTTTGGAAAGGTGCATATGATTCTGCGCTTTCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

34.28

Weight (kDa)

6.19

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	764
AciI	CCGC	2 cut(s)	7, 172
AclWI	GGATC	3 cut(s)	183, 247, 851
AcoI	YGGCCR	2 cut(s)	43, 752
AcsI	RAATTY	3 cut(s)	387, 613, 709
AfiI	CCNNNNNNNGG	6 cut(s)	23, 29, 30, 41, 764, 887
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	3 cut(s)	392, 451, 506
AjnI	CCWGG	1 cut(s)	757
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	3 cut(s)	183, 247, 851
AlwNI	CAGNNNCTG	1 cut(s)	490
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	5 cut(s)	32, 43, 396, 728, 752
ApoI	RAATTY	3 cut(s)	387, 613, 709
AspLEI	GCGC	1 cut(s)	928
AspS9I	GGNCC	3 cut(s)	14, 32, 607
AsuC2I	CCSGG	3 cut(s)	24, 25, 257
AsuHPI	GGTGA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	14, 607
BalI	TGGCCA	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	337
BccI	CCATC	4 cut(s)	78, 568, 710, 758
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	1 cut(s)	759
BcnI	CCSGG	3 cut(s)	24, 25, 257
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	579, 882
BfmI	CTRYAG	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	209
Bme1390I	CCNGG	4 cut(s)	24, 25, 257, 759
Bme18I	GGWCC	2 cut(s)	14, 607
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	3 cut(s)	14, 32, 607
BmrFI	CCNGG	4 cut(s)	24, 25, 257, 759
BmsI	GCATC	2 cut(s)	237, 859
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	3 cut(s)	24, 25, 257
BsaAI	YACGTR	1 cut(s)	796
BsaJI	CCNNGG	2 cut(s)	23, 694
Bsc4I	CCNNNNNNNGG	6 cut(s)	23, 29, 30, 41, 764, 887
Bse1I	ACTGG	4 cut(s)	46, 129, 429, 655
Bse3DI	GCAATG	2 cut(s)	17, 558
BseBI	CCWGG	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	23, 694
BseGI	GGATG	5 cut(s)	70, 202, 228, 433, 579
BseLI	CCNNNNNNNGG	6 cut(s)	23, 29, 30, 41, 764, 887
BseMI	GCAATG	2 cut(s)	17, 558
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	4 cut(s)	46, 129, 429, 655
BseRI	GAGGAG	1 cut(s)	206
BshFI	GGCC	5 cut(s)	34, 45, 398, 730, 754
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	24, 256
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	6 cut(s)	23, 29, 30, 41, 764, 887
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	800
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	5 cut(s)	34, 45, 398, 730, 754
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	175, 252, 856
BspACI	CCGC	2 cut(s)	7, 172
BspANI	GGCC	5 cut(s)	34, 45, 398, 730, 754
BspCNI	CTCAG	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	3 cut(s)	183, 247, 851
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	17, 558
BsrI	ACTGG	4 cut(s)	46, 129, 429, 655
BssECI	CCNNGG	2 cut(s)	23, 694
BssMI	GATC	3 cut(s)	175, 252, 856
BssT1I	CCWWGG	1 cut(s)	694
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	1 cut(s)	772
BstAFI	CTTAAG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstBAI	YACGTR	1 cut(s)	796
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	5 cut(s)	70, 202, 228, 433, 579
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	3 cut(s)	178, 255, 859
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	3 cut(s)	175, 252, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 538, 789, 833
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	4 cut(s)	22, 23, 255, 757
BstSFI	CTRYAG	1 cut(s)	186
BstSNI	TACGTA	1 cut(s)	796
BstX2I	RGATCY	2 cut(s)	175, 252
BstYI	RGATCY	2 cut(s)	175, 252
BsuRI	GGCC	5 cut(s)	34, 45, 398, 730, 754
BtsCI	GGATG	5 cut(s)	70, 202, 228, 433, 579
CaiI	CAGNNNCTG	1 cut(s)	490
CfoI	GCGC	1 cut(s)	928
Cfr13I	GGNCC	3 cut(s)	14, 32, 607
Cfr9I	CCCGGG	1 cut(s)	23
CviAII	CATG	5 cut(s)	11, 158, 220, 340, 632
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	177, 254, 858
DpnII	GATC	3 cut(s)	175, 252, 856
DraI	TTTAAA	1 cut(s)	522
EaeI	YGGCCR	2 cut(s)	43, 752
Eco105I	TACGTA	1 cut(s)	796
Eco130I	CCWWGG	1 cut(s)	694
Eco147I	AGGCCT	1 cut(s)	730
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	14, 607
Eco88I	CYCGRG	1 cut(s)	23
EcoO109I	RGGNCCY	2 cut(s)	32, 607
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	5 cut(s)	14, 161, 223, 343, 635
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	5 cut(s)	10, 157, 219, 339, 631
FauI	CCCGC	1 cut(s)	165
FauNDI	CATATG	2 cut(s)	778, 916
FokI	GGATG	5 cut(s)	57, 209, 215, 440, 586
FriOI	GRGCYC	1 cut(s)	337
FspBI	CTAG	2 cut(s)	579, 882
GlaI	GCGC	1 cut(s)	927
HaeIII	GGCC	5 cut(s)	34, 45, 398, 730, 754
HapII	CCGG	2 cut(s)	24, 256
HhaI	GCGC	1 cut(s)	928
Hin1II	CATG	5 cut(s)	14, 161, 223, 343, 635
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HinfI	GANTC	2 cut(s)	59, 920
HpaII	CCGG	2 cut(s)	24, 256
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	3 cut(s)	252, 435, 619
Hpy188III	TCNNGA	3 cut(s)	74, 232, 610
HpyAV	CCTTC	3 cut(s)	313, 409, 508
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	9 cut(s)	98, 188, 278, 328, 412, 541, 635, 872, 914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 538, 789, 833
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	5 cut(s)	14, 161, 223, 343, 635
HspAI	GCGC	1 cut(s)	926
Kzo9I	GATC	3 cut(s)	175, 252, 856
LmnI	GCTCC	1 cut(s)	845
LweI	GCATC	2 cut(s)	237, 859
MaeI	CTAG	2 cut(s)	579, 882
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	3 cut(s)	242, 599, 656
MalI	GATC	3 cut(s)	177, 254, 858
MboI	GATC	3 cut(s)	175, 252, 856
MboII	GAAGA	3 cut(s)	328, 488, 571
MflI	RGATCY	2 cut(s)	175, 252
MhlI	GDGCHC	1 cut(s)	337
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	7 cut(s)	93, 323, 387, 407, 567, 613, 709
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	9 cut(s)	184, 187, 301, 397, 465, 480, 598, 720, 871
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	4 cut(s)	167, 210, 384, 521
MslI	CAYNNNNRTG	1 cut(s)	651
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	875
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	2 cut(s)	24, 256
MspR9I	CCNGG	4 cut(s)	24, 25, 257, 759
MssI	GTTTAAAC	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	759
MwoI	GCNNNNNNNGC	4 cut(s)	104, 538, 789, 833
NciI	CCSGG	3 cut(s)	24, 25, 257
NdeI	CATATG	2 cut(s)	778, 916
NdeII	GATC	3 cut(s)	175, 252, 856
NlaIII	CATG	5 cut(s)	14, 161, 223, 343, 635
NmuCI	GTSAC	2 cut(s)	242, 599
NspI	RCATGY	1 cut(s)	635
PceI	AGGCCT	1 cut(s)	730
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	920
PflFI	GACNNNGTC	1 cut(s)	605
PflMI	CCANNNNNTGG	1 cut(s)	764
PleI	GAGTC	1 cut(s)	67
PmeI	GTTTAAAC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	67
Ppu21I	YACGTR	1 cut(s)	796
PpuMI	RGGWCCY	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	757
PspPI	GGNCC	3 cut(s)	14, 32, 607
PspPPI	RGGWCCY	1 cut(s)	607
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	175, 252
PsyI	GACNNNGTC	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	875
RseI	CAYNNNNRTG	1 cut(s)	651
SaqAI	TTAA	4 cut(s)	167, 210, 384, 521
Sau3AI	GATC	3 cut(s)	175, 252, 856
Sau96I	GGNCC	3 cut(s)	14, 32, 607
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	4 cut(s)	24, 25, 257, 759
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	2 cut(s)	237, 859
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	14, 607
SmaI	CCCGGG	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	2 cut(s)	209, 469
SmoI	CTYRAG	2 cut(s)	209, 469
SnaBI	TACGTA	1 cut(s)	796
Sse9I	AATT	7 cut(s)	93, 323, 387, 407, 567, 613, 709
SseBI	AGGCCT	1 cut(s)	730
SsiI	CCGC	2 cut(s)	7, 172
SspMI	CTAG	2 cut(s)	579, 882
StuI	AGGCCT	1 cut(s)	730
StyD4I	CCNGG	4 cut(s)	22, 23, 255, 757
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	1 cut(s)	772
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	1 cut(s)	421
TasI	AATT	7 cut(s)	93, 323, 387, 407, 567, 613, 709
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	920
Tru1I	TTAA	4 cut(s)	167, 210, 384, 521
Tru9I	TTAA	4 cut(s)	167, 210, 384, 521
TseFI	GTSAC	2 cut(s)	242, 599
Tsp45I	GTSAC	2 cut(s)	242, 599
TspDTI	ATGAA	1 cut(s)	560
TspMI	CCCGGG	1 cut(s)	23
Tth111I	GACNNNGTC	1 cut(s)	605
Van91I	CCANNNNNTGG	1 cut(s)	764
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	14, 607
XapI	RAATTY	3 cut(s)	387, 613, 709
XceI	RCATGY	1 cut(s)	635
XmaI	CCCGGG	1 cut(s)	23
XspI	CTAG	2 cut(s)	579, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.