AT5G65240
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
26073671 .. 26078259
4589 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65240.2

Sequence Viewer

Length: 1824 bp
ATGGCTCTGCTTATTATCACTGCCTTAGTTTTTAGTAGTTTATGGTCATCTGTGTCACCAGATGCTCAAGGGGATGCATTATTTGCGTTGAGGAGCTCGTTACGTGCATCTCCTGAACAGCTTAGTGATTGGAACCAGAATCAAGTCGATCCTTGTACTTGGTCTCAAGTTATTTGTGATGACAAGAAACATGTTACTTCTGTAACCTTGTCTTACATGAACTTCTCCTCGGGAACACTGTCTTCAGGAATAGGAATCTTGACAACTCTCAAGACTCTTACATTGAAGGGAAATGGAATAATGGGTGGAATACCAGAATCCATTGGAAATCTGTCTAGCTTGACCAGCTTAGATTTGGAGGATAATCACTTAACTGATCGCATTCCATCCACTCTCGGTAATCTCAAGAATCTACAGTTCTTGACCTTGAGTAGGAATAACCTTAATGGTTCTATCCCGGATTCACTTACAGGTCTATCAAAACTGATAAATATTCTGCTCGACTCAAATAATCTCAGTGGTGAGATTCCTCAGAGTTTATTCAAAATCCCAAAATACAATTTCACAGCAAACAACTTGAGCTGTGGTGGCACTTTCCCGCAACCTTGTGTAACCGAGTCCAGTCCTTCAGGTGATTCAAGCAGTAGAAAAACTGGAATCATCGCTGGAGTTGTTAGCGGAATAGCGGTTATTCTACTAGGATTCTTCTTCTTTTTCTTCTGCAAGGATAAACATAAAGGATATAAACGAGACGTATTTGTGGATGTTGCAGGTGAAGTGGACAGAAGGATTGCTTTTGGACAGTTGAGAAGATTTGCATGGAGAGAGCTTCAGTTGGCTACAGATGAGTTCAGTGAAAAGAATGTTCTCGGACAAGGAGGCTTTGGGAAAGTTTACAAAGGATTGCTTTCGGATGGCACCAAAGTCGCTGTAAAAAGATTGACTGATTTTGAACGTCCAGGAGGAGATGAAGCTTTCCAGAGAGAAGTTGAGATGATAAGTGTAGCTGTTCATAGGAATCTGCTTCGCCTTATCGGCTTTTGTACAACACAAACTGAACGACTTTTGGTGTATCCTTTCATGCAGAATCTAAGTGTTGCATATTGCTTAAGAGAGATTAAACCCGGGGATCCAGTTCTGGATTGGTTCAGGAGGAAACAGATTGCGTTAGGTGCAGCACGAGGACTCGAATATCTTCATGAACATTGCAACCCGAAGATCATACACAGAGATGTGAAAGCTGCAAATGTGTTACTAGATGAAGACTTTGAAGCAGTGGTTGGTGATTTTGGTTTAGCCAAGTTGGTAGATGTTAGAAGGACTAATGTAACCACTCAGGTCCGAGGAACAATGGGTCATATTGCACCAGAATGTATATCCACAGGGAAATCGTCAGAGAAAACCGATGTTTTCGGGTACGGAATTATGCTTCTGGAGCTTGTAACTGGACAAAGAGCAATTGATTTCTCGCGGTTAGAGGAAGAAGATGATGTCTTATTGCTAGACCATGTGAAGAAACTGGAAAGAGAGAAGAGATTAGAAGACATAGTAGATAAGAAGCTTGATGAGGATTATATAAAGGAAGAAGTTGAAATGATGATACAAGTAGCTCTGCTATGCACACAAGCAGCACCGGAAGAACGACCAGCGATGTCGGAAGTAGTAAGAATGCTAGAAGGAGAAGGGCTTGCAGAGAGATGGGAAGAGTGGCAGAATCTTGAAGTGACGAGACAAGAAGAGTTTCAGAGGTTGCAGAGGAGATTTGATTGGGGTGAAGATTCCATTAATAATCAAGATGCTATTGAATTATCTGGTGGAAGATAG

Protein Analysis

607

Amino Acids

67.72

Weight (kDa)

5.25

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 21 - 60 2.8e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 73 - 166 2.8e-09 Leucine-rich repeat region
LRR_8 PF13855 113 - 172 4.2e-07 Leucine rich repeat
Pkinase PF00069 285 - 556 9.5e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 287 - 558 4.8e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 761
Acc36I ACCTGC 1 cut(s) 761
AccB1I GGYRCC 1 cut(s) 917
AccII CGCG 1 cut(s) 1471
AciI CCGC 4 cut(s) 599, 678, 686, 1471
AclWI GGATC 3 cut(s) 143, 1124, 1137
AcuI CTGAAG 3 cut(s) 228, 612, 815
AfaI GTAC 3 cut(s) 157, 1045, 1418
AfiI CCNNNNNNNGG 1 cut(s) 432
AflII CTTAAG 1 cut(s) 1108
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 8 cut(s) 286, 544, 639, 953, 1271, 1592, 1721, 1805
AjnI CCWGG 1 cut(s) 958
AjuI GAANNNNNNNTTGG 2 cut(s) 1263, 1295
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 3 cut(s) 168, 744, 1723
AlwI GGATC 3 cut(s) 143, 1124, 1137
Ama87I CYCGRG 2 cut(s) 229, 1124
ApeKI GCWGC 3 cut(s) 1175, 1241, 1628
AseI ATTAAT 1 cut(s) 1785
Asp700I GAANNNNTTC 2 cut(s) 1194, 1740
AspS9I GGNCC 1 cut(s) 1339
AsuC2I CCSGG 3 cut(s) 458, 1125, 1126
AsuHPI GGTGA 6 cut(s) 48, 533, 644, 785, 1295, 1784
AvaI CYCGRG 2 cut(s) 229, 1124
AvaII GGWCC 1 cut(s) 1339
BamHI GGATCC 1 cut(s) 1129
BanI GGYRCC 1 cut(s) 917
BanII GRGCYC 1 cut(s) 98
BauI CACGAG 1 cut(s) 1179
BbsI GAAGAC 3 cut(s) 234, 1269, 1548
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 3 cut(s) 1187, 1228, 1640
BccI CCATC 3 cut(s) 394, 908, 1692
BcgI CGANNNNNNTGC 2 cut(s) 907, 941
BciT130I CCWGG 1 cut(s) 960
BciVI GTATCC 1 cut(s) 1083
BcnI CCSGG 3 cut(s) 458, 1125, 1126
BcoDI GTCTC 3 cut(s) 168, 744, 1723
BfaI CTAG 5 cut(s) 336, 698, 1256, 1502, 1673
BfmI CTRYAG 2 cut(s) 413, 840
BfrI CTTAAG 1 cut(s) 1108
BfuAI ACCTGC 1 cut(s) 761
BfuI GTATCC 1 cut(s) 1083
BglI GCCNNNNNGGC 1 cut(s) 1035
BisI GCNGC 3 cut(s) 1176, 1242, 1629
BlsI GCNGC 3 cut(s) 1177, 1243, 1630
Bme1390I CCNGG 4 cut(s) 458, 960, 1125, 1126
Bme18I GGWCC 1 cut(s) 1339
BmeT110I CYCGRG 2 cut(s) 229, 1124
BmgT120I GGNCC 1 cut(s) 1339
BmiI GGNNCC 3 cut(s) 134, 919, 1131
BmrFI CCNGG 4 cut(s) 458, 960, 1125, 1126
BmsI GCATC 4 cut(s) 52, 64, 116, 1786
BpiI GAAGAC 3 cut(s) 234, 1269, 1548
BpmI CTGGAG 2 cut(s) 687, 1454
BpuEI CTTGAG 6 cut(s) 51, 150, 254, 389, 448, 598
BpuMI CCSGG 3 cut(s) 458, 1125, 1126
BsaAI YACGTR 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 4 cut(s) 228, 1124, 1125, 1342
BsaWI WCCGGW 1 cut(s) 1633
Bsc4I CCNNNNNNNGG 1 cut(s) 432
Bse1I ACTGG 5 cut(s) 621, 658, 1133, 1450, 1524
Bse3DI GCAATG 1 cut(s) 1204
BseBI CCWGG 1 cut(s) 960
BseDI CCNNGG 4 cut(s) 228, 1124, 1125, 1342
BseGI GGATG 4 cut(s) 79, 386, 769, 919
BseLI CCNNNNNNNGG 1 cut(s) 432
BseMI GCAATG 1 cut(s) 1204
BseMII CTCAG 3 cut(s) 529, 545, 1349
BseNI ACTGG 5 cut(s) 621, 658, 1133, 1450, 1524
BseRI GAGGAG 4 cut(s) 106, 217, 978, 1771
BseXI GCAGC 3 cut(s) 1187, 1228, 1640
BsgI GTGCAG 1 cut(s) 1194
Bsh1236I CGCG 1 cut(s) 1471
BshNI GGYRCC 1 cut(s) 917
BsiHKAI GWGCWC 1 cut(s) 98
BsiHKCI CYCGRG 2 cut(s) 229, 1124
BsiSI CCGG 3 cut(s) 458, 1125, 1634
BslI CCNNNNNNNGG 1 cut(s) 432
BsmAI GTCTC 3 cut(s) 168, 744, 1723
BsmBI CGTCTC 1 cut(s) 744
BsmI GAATGC 2 cut(s) 381, 1674
Bso31I GGTCTC 1 cut(s) 168
BsoBI CYCGRG 2 cut(s) 229, 1124
Bsp1286I GDGCHC 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 1043
Bsp143I GATC 4 cut(s) 148, 376, 1129, 1218
BspACI CCGC 4 cut(s) 599, 678, 686, 1471
BspCNI CTCAG 3 cut(s) 528, 544, 1348
BspFNI CGCG 1 cut(s) 1471
BspHI TCATGA 1 cut(s) 1198
BspLI GGNNCC 3 cut(s) 134, 919, 1131
BspMI ACCTGC 1 cut(s) 761
BspPI GGATC 3 cut(s) 143, 1124, 1137
BspT107I GGYRCC 1 cut(s) 917
BspTI CTTAAG 1 cut(s) 1108
BspTNI GGTCTC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 1204
BsrGI TGTACA 1 cut(s) 1043
BsrI ACTGG 5 cut(s) 621, 658, 1133, 1450, 1524
BssECI CCNNGG 4 cut(s) 228, 1124, 1125, 1342
BssMI GATC 4 cut(s) 148, 376, 1129, 1218
BssSI CACGAG 1 cut(s) 1179
Bst2BI CACGAG 1 cut(s) 1179
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 3 cut(s) 240, 417, 804
Bst6I CTCTTC 3 cut(s) 1526, 1698, 1731
BstAFI CTTAAG 1 cut(s) 1108
BstAPI GCANNNNNTGC 1 cut(s) 83
BstAUI TGTACA 1 cut(s) 1043
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 1689
BstDEI CTNAG 7 cut(s) 25, 122, 349, 515, 531, 1091, 1335
BstENI CCTNNNNNAGG 1 cut(s) 430
BstF5I GGATG 4 cut(s) 79, 386, 769, 919
BstFNI CGCG 1 cut(s) 1471
BstKTI GATC 4 cut(s) 151, 379, 1132, 1221
BstMAI GTCTC 3 cut(s) 168, 744, 1723
BstMBI GATC 4 cut(s) 148, 376, 1129, 1218
BstMWI GCNNNNNNNGC 6 cut(s) 83, 345, 588, 1035, 1172, 1435
BstNI CCWGG 1 cut(s) 960
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 4 cut(s) 456, 958, 1123, 1124
BstSFI CTRYAG 2 cut(s) 413, 840
BstUI CGCG 1 cut(s) 1471
BstV1I GCAGC 3 cut(s) 1187, 1228, 1640
BstV2I GAAGAC 3 cut(s) 234, 1269, 1548
BstX2I RGATCY 1 cut(s) 1129
BstYI RGATCY 1 cut(s) 1129
BsuI GTATCC 1 cut(s) 1083
BtgZI GCGATG 2 cut(s) 646, 1664
BtsCI GGATG 4 cut(s) 79, 386, 769, 919
BtsI GCAGTG 2 cut(s) 18, 1281
BtsIMutI CAGTG 5 cut(s) 18, 236, 523, 859, 1281
BveI ACCTGC 1 cut(s) 761
Cac8I GCNNGC 1 cut(s) 1689
CciI TCATGA 1 cut(s) 1198
Cfr13I GGNCC 1 cut(s) 1339
Cfr9I CCCGGG 1 cut(s) 1124
Csp6I GTAC 3 cut(s) 156, 1044, 1417
CviAII CATG 6 cut(s) 191, 217, 819, 1081, 1199, 1508
CviQI GTAC 3 cut(s) 156, 1044, 1417
DdeI CTNAG 7 cut(s) 25, 122, 349, 515, 531, 1091, 1335
DpnI GATC 4 cut(s) 150, 378, 1131, 1220
DpnII GATC 4 cut(s) 148, 376, 1129, 1218
Eam1104I CTCTTC 3 cut(s) 1526, 1698, 1731
EarI CTCTTC 3 cut(s) 1526, 1698, 1731
Ecl136II GAGCTC 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 1339
Eco53kI GAGCTC 1 cut(s) 96
Eco57I CTGAAG 3 cut(s) 228, 612, 815
Eco88I CYCGRG 2 cut(s) 229, 1124
EcoICRI GAGCTC 1 cut(s) 96
EcoNI CCTNNNNNAGG 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 958
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 6 cut(s) 194, 220, 822, 1084, 1202, 1511
FalI AAGNNNNNCTT 4 cut(s) 778, 810, 891, 923
FatI CATG 6 cut(s) 190, 216, 818, 1080, 1198, 1507
FauI CCCGC 1 cut(s) 606
Fnu4HI GCNGC 3 cut(s) 1176, 1242, 1629
FokI GGATG 4 cut(s) 86, 373, 776, 926
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 3 cut(s) 1176, 1242, 1629
FspBI CTAG 5 cut(s) 336, 698, 1256, 1502, 1673
GluI GCNGC 3 cut(s) 1176, 1242, 1629
GsuI CTGGAG 2 cut(s) 687, 1454
HapII CCGG 3 cut(s) 458, 1125, 1634
Hin1II CATG 6 cut(s) 194, 220, 822, 1084, 1202, 1511
HindIII AAGCTT 2 cut(s) 972, 1559
HpaII CCGG 3 cut(s) 458, 1125, 1634
HphI GGTGA 6 cut(s) 48, 533, 644, 785, 1295, 1784
Hpy166II GTNNAC 2 cut(s) 781, 895
Hpy188I TCNGA 7 cut(s) 534, 872, 913, 1343, 1396, 1657, 1746
Hpy8I GTNNAC 2 cut(s) 781, 895
HpyAV CCTTC 6 cut(s) 280, 636, 780, 1311, 1670, 1676
HpyCH4III ACNGT 3 cut(s) 240, 417, 804
HpyCH4IV ACGT 3 cut(s) 103, 753, 955
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 345, 588, 1035, 1172, 1435
HpyF3I CTNAG 7 cut(s) 25, 122, 349, 515, 531, 1091, 1335
HpySE526I ACGT 3 cut(s) 103, 753, 955
Hsp92II CATG 6 cut(s) 194, 220, 822, 1084, 1202, 1511
Kzo9I GATC 4 cut(s) 148, 376, 1129, 1218
LmnI GCTCC 2 cut(s) 93, 1435
Lsp1109I GCAGC 3 cut(s) 1187, 1228, 1640
LweI GCATC 4 cut(s) 52, 64, 116, 1786
MaeI CTAG 5 cut(s) 336, 698, 1256, 1502, 1673
MaeII ACGT 3 cut(s) 103, 753, 955
MaeIII GTNAC 9 cut(s) 54, 99, 193, 202, 610, 1251, 1327, 1441, 1723
MalI GATC 4 cut(s) 150, 378, 1131, 1220
MboI GATC 4 cut(s) 148, 376, 1129, 1218
MfeI CAATTG 1 cut(s) 1458
MflI RGATCY 1 cut(s) 1129
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 4 cut(s) 559, 1422, 1458, 1805
MlyI GAGTC 4 cut(s) 268, 497, 626, 1179
MmeI TCCRAC 1 cut(s) 1635
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 2 cut(s) 1194, 1740
MseI TTAA 5 cut(s) 371, 444, 1109, 1119, 1785
MslI CAYNNNNRTG 2 cut(s) 1230, 1369
MspCI CTTAAG 1 cut(s) 1108
MspI CCGG 3 cut(s) 458, 1125, 1634
MspR9I CCNGG 4 cut(s) 458, 960, 1125, 1126
MunI CAATTG 1 cut(s) 1458
Mva1269I GAATGC 2 cut(s) 381, 1674
MvaI CCWGG 1 cut(s) 960
MvnI CGCG 1 cut(s) 1471
MwoI GCNNNNNNNGC 6 cut(s) 83, 345, 588, 1035, 1172, 1435
NciI CCSGG 3 cut(s) 458, 1125, 1126
NdeII GATC 4 cut(s) 148, 376, 1129, 1218
NlaIII CATG 6 cut(s) 194, 220, 822, 1084, 1202, 1511
NlaIV GGNNCC 3 cut(s) 134, 919, 1131
NmuCI GTSAC 2 cut(s) 54, 1723
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 1 cut(s) 194
PagI TCATGA 1 cut(s) 1198
PaqCI CACCTGC 1 cut(s) 761
PciI ACATGT 1 cut(s) 190
PctI GAATGC 2 cut(s) 381, 1674
PdmI GAANNNNTTC 2 cut(s) 1194, 1740
PfoI TCCNGGA 2 cut(s) 456, 958
PkrI GCNGC 3 cut(s) 1177, 1243, 1630
PleI GAGTC 4 cut(s) 268, 497, 625, 1179
PpsI GAGTC 4 cut(s) 268, 497, 625, 1179
Ppu21I YACGTR 1 cut(s) 104
PscI ACATGT 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 1785
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 958
PspGI CCWGG 1 cut(s) 958
PspN4I GGNNCC 3 cut(s) 134, 919, 1131
PspPI GGNCC 1 cut(s) 1339
PsuI RGATCY 1 cut(s) 1129
RsaI GTAC 3 cut(s) 157, 1045, 1418
RsaNI GTAC 3 cut(s) 156, 1044, 1417
RseI CAYNNNNRTG 2 cut(s) 1230, 1369
SacI GAGCTC 1 cut(s) 98
SaqAI TTAA 5 cut(s) 371, 444, 1109, 1119, 1785
SatI GCNGC 3 cut(s) 1176, 1242, 1629
Sau3AI GATC 4 cut(s) 148, 376, 1129, 1218
Sau96I GGNCC 1 cut(s) 1339
SchI GAGTC 4 cut(s) 268, 497, 626, 1179
ScrFI CCNGG 4 cut(s) 458, 960, 1125, 1126
SduI GDGCHC 1 cut(s) 98
SfaNI GCATC 4 cut(s) 52, 64, 116, 1786
SfcI CTRYAG 2 cut(s) 413, 840
SinI GGWCC 1 cut(s) 1339
SmaI CCCGGG 1 cut(s) 1126
SmiMI CAYNNNNRTG 2 cut(s) 1230, 1369
SmlI CTYRAG 7 cut(s) 66, 165, 269, 404, 427, 577, 1108
SmoI CTYRAG 7 cut(s) 66, 165, 269, 404, 427, 577, 1108
Sse9I AATT 4 cut(s) 559, 1422, 1458, 1805
SsiI CCGC 4 cut(s) 599, 678, 686, 1471
SspI AATATT 1 cut(s) 493
SspMI CTAG 5 cut(s) 336, 698, 1256, 1502, 1673
SstI GAGCTC 1 cut(s) 98
StyD4I CCNGG 4 cut(s) 456, 958, 1123, 1124
TaaI ACNGT 3 cut(s) 240, 417, 804
TaiI ACGT 3 cut(s) 106, 756, 958
TaqI TCGA 3 cut(s) 147, 501, 1188
TasI AATT 4 cut(s) 559, 1422, 1458, 1805
TatI WGTACW 2 cut(s) 155, 1043
Tru1I TTAA 5 cut(s) 371, 444, 1109, 1119, 1785
Tru9I TTAA 5 cut(s) 371, 444, 1109, 1119, 1785
TscAI CASTG 5 cut(s) 25, 243, 523, 859, 1281
TseFI GTSAC 2 cut(s) 54, 1723
TseI GCWGC 3 cut(s) 1175, 1241, 1628
Tsp45I GTSAC 2 cut(s) 54, 1723
TspDTI ATGAA 7 cut(s) 233, 984, 1001, 1069, 1187, 1215, 1275
TspGWI ACGGA 1 cut(s) 1434
TspMI CCCGGG 1 cut(s) 1124
TspRI CASTG 5 cut(s) 25, 243, 523, 859, 1281
Vha464I CTTAAG 1 cut(s) 1108
VpaK11BI GGWCC 1 cut(s) 1339
VspI ATTAAT 1 cut(s) 1785
XagI CCTNNNNNAGG 1 cut(s) 430
XceI RCATGY 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 2 cut(s) 352, 1140
XmaI CCCGGG 1 cut(s) 1124
XmnI GAANNNNTTC 2 cut(s) 1194, 1740
XspI CTAG 5 cut(s) 336, 698, 1256, 1502, 1673
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.