Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002426

Physical Location & Seq

Genomic Coordinates Forward (+)

24325864 .. 24328850

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28410.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAGATTGAACTGCAATTTCCCCCATTTTTGATGTATTGGTTTTGTGGTTCATTGCATCCATCACTAGAAAGAATGATGCTGTTGAAAATGGATCTAGTCTTTGCAGTTTTGGTCTTGGCTTGCTTACAGTCTTTTGTATTGCCTGATTCACAGGGAGAAGCACTGTTTTCATTGTGGCAGTCTTTGAATAGTTCACCTAATCAGCTCAAGGACTGGAACGCCAACCAAGTCAATCCATGCAGTTGGCCCAATGTGCAGTGTGACCCTAACAATAATAATGTCATTTCTGTAATGTTGGTAAATATTGGATTTTCTGGAATCTTGTCTCCTAAATTAGGAGCCTTGAAAAATCTTCGAACACTTTCATTACAAGGAAATGGCATAGCTGGCGAGATACCAAAAGAGTTTGGAAATCTAATAAGTTTATCCACCTTGAATTTAGAAAACAATAATTTAAATGGTGAAATACCAGCTTCCTTTGGCAATCTGAAAAATGTCCAATTTTTGAATTTGAATAACAATAATCTGAGTGGTACAATCCCAGAGTCACTTTCAAGTCTTTCGAACTTGATTAGTCTGTACGTTATTTTTCATGGACAACTATTTTGGTACTCCATCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

209

Amino Acids

23.12

Weight (kDa)

5.26

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10290 AT5G10290 AT5G65240 AT5G65240
fragaria_vesca	FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640
malus_domestica	MD01G1032200.v1.1 MD15G1322900.v1.1 MD15G1323000.v1.1
prunus_persica	Prupe.6G189000_v2.0.a1 Prupe.6G189000_v2.0.a1
pyrus_communis	pycom01g05940 pycom15g28350 pycom15g28360 pycom15g28370 pycom15g28410 pycom15g28430
rosa_chinensis	RchiOBHm_Chr2g0113091
rosa_laevigata	RLG00000018037
rosa_multiflora	Rmu_sc0005949.1_g000009 Rmu_sc0018337.1_g000002 Rmu_sc0034368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130900
rosa_rugosa	Rorug02G0183900 Rorug02G0184000 Rorug02G0184100 Rorug02G0184200 Rorug02G0184300 Rorug02G0184400 Rorug02G0184500 Rorug02G0184600
rosa_samantha	Rh2AG239000 Rh2BG252700 Rh2CG243200 Rh2DG247100
rosa_wichuraiana	Rw2G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	2 cut(s)	439, 511
AfaI	GTAC	3 cut(s)	538, 584, 614
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	8 cut(s)	11, 88, 190, 349, 439, 511, 517, 558
AluBI	AGCT	3 cut(s)	208, 389, 476
AluI	AGCT	3 cut(s)	208, 389, 476
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	439, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	591, 623
Asp700I	GAANNNNTTC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	189, 476
AsuII	TTCGAA	2 cut(s)	358, 566
BccI	CCATC	2 cut(s)	70, 626
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	2 cut(s)	68, 98
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	343
BmsI	GCATC	2 cut(s)	67, 69
Bpu14I	TTCGAA	2 cut(s)	358, 566
BpuEI	CTTGAG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	250
Bsp119I	TTCGAA	2 cut(s)	358, 566
Bsp143I	GATC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	102
BspT104I	TTCGAA	2 cut(s)	358, 566
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	221
BssMI	GATC	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	132, 168
BstBI	TTCGAA	2 cut(s)	358, 566
BstC8I	GCNNGC	2 cut(s)	124, 391
BstDEI	CTNAG	1 cut(s)	530
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 390
BstX2I	RGATCY	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	58
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	164, 266
Cac8I	GCNNGC	2 cut(s)	124, 391
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	3 cut(s)	537, 583, 613
CviAII	CATG	2 cut(s)	240, 596
CviJI	RGCY	6 cut(s)	122, 208, 250, 344, 389, 476
CviKI_1	RGCY	6 cut(s)	122, 208, 250, 344, 389, 476
CviQI	GTAC	3 cut(s)	537, 583, 613
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
DraI	TTTAAA	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	243, 599
FaiI	YATR	3 cut(s)	241, 386, 597
FatI	CATG	2 cut(s)	239, 595
FokI	GGATG	1 cut(s)	45
FspBI	CTAG	2 cut(s)	68, 98
HaeIII	GGCC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	243, 599
HinfI	GANTC	3 cut(s)	149, 321, 548
HphI	GGTGA	2 cut(s)	189, 476
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	492, 531
Hpy188III	TCNNGA	1 cut(s)	318
Hpy8I	GTNNAC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	132, 168
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	5 cut(s)	16, 58, 107, 243, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 390
HpyF3I	CTNAG	1 cut(s)	530
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	2 cut(s)	243, 599
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	7 cut(s)	140, 159, 202, 303, 375, 486, 558
LweI	GCATC	2 cut(s)	67, 69
MaeI	CTAG	2 cut(s)	68, 98
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	263, 549
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	2 cut(s)	16, 347
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	6 cut(s)	17, 335, 439, 454, 503, 511
MlyI	GAGTC	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	1 cut(s)	458
MwoI	GCNNNNNNNGC	2 cut(s)	256, 390
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	243, 599
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	263, 549
NspV	TTCGAA	2 cut(s)	358, 566
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	149, 321
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	3 cut(s)	538, 584, 614
RsaNI	GTAC	3 cut(s)	537, 583, 613
SaqAI	TTAA	1 cut(s)	458
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	557
SetI	ASST	6 cut(s)	202, 210, 391, 437, 478, 588
SfaNI	GCATC	2 cut(s)	67, 69
SfuI	TTCGAA	2 cut(s)	358, 566
SmiI	ATTTAAAT	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	6 cut(s)	17, 335, 439, 454, 503, 511
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	2 cut(s)	68, 98
SwaI	ATTTAAAT	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	132, 168
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	358, 566
TasI	AATT	6 cut(s)	17, 335, 439, 454, 503, 511
TfiI	GAWTC	2 cut(s)	149, 321
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	2 cut(s)	171, 266
TseFI	GTSAC	2 cut(s)	263, 549
Tsp45I	GTSAC	2 cut(s)	263, 549
TspDTI	ATGAA	5 cut(s)	17, 42, 162, 357, 584
TspRI	CASTG	2 cut(s)	171, 266
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	2 cut(s)	439, 511
XmnI	GAANNNNTTC	1 cut(s)	364
XspI	CTAG	2 cut(s)	68, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.