Rh2DG247100
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
25401264 .. 25407289
6026 bp
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UTR
Exon/CDS
Intron
Rh2DG247100.1

Sequence Viewer

Length: 1674 bp
ATGGTAATGTTGTTGAAGATGGAGCTACTATTTGCAGTTCTGGCACTTGCTAGCTTGCATTCTTTCGTATTGCCAGATCCACAAGGAGATGCACTGTATTCATTGAGGACTTCATTGATTACTTCACCCAATCAGCTCAAGGACTGGAATCCCAACCAAGTCAATCCATGCACTTGGTCCAATGTGAATTGCGACACTGACAACAATGTCATTTCTGTAACATTATCAAATATTGGATTTAATGGAACCTTATCCCCTAAAGTAGGAAACCTGAAAACTCTTCAAATACTTGCATTGCAAGGAAATGGCATAACTGGTGAGATACCAAAAGAGTTTGGAGATCTGACAAGTTTGGCCACCTTGAATTTGGAAAATAATAATTTAACTGGTGCAATACCAGCTTCCCTTGGTAATCTGAAAAAGCTTCAATTCTTGACTTTGAGTCAAAACAATTTGAACGGGAGCATCCCAGATTCACTTTCAAATCTTTCAACTTTGATTAATCTTCAGCTCGCCCTCAATGCTCTCAGTGGTCAAATACCTGAGCAGTTATTTCAGATTCAAAAATACAATTTTACAGGAAACAAACTAAACTGTGGTGTAAATCTTCCCCACAGTTGTGCATCCGATACTGATGTGTCTGGATCTTCAAATAAGCCAAAGCTTGGAATTATAGTTGGAGCTGTTGGAGGGTTCATCATTTTACTTTTTGGAGGCTTGGTTTACTTTGTTTGTAAGCGTAGACACAAAGACTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGACCGAAGGATTGCATTCGGTCAGTTGAAAAGATTTTCGTGGAGGGAATTGCAGCTGGCTACAGACAACTTCAATGAGAACAATGTTCTAGGACAGGGGGGTTTTGGTAAAGTCTATAAAGGAGTGTTATCTGATACTACAAAAATTGCTGTTAAACGGCTGACCGATTATGAGAGTCCTGGGGGAGATGCAGCTTTTCAGCGTGAAGTTGAAATGATAAGTGTAGCTGTTCACAGGAACCTATTACGACTGATTGGATTTTGCACAACCCCAACAGAACGCCTTTTGGTGTATCCCTTCATGCAAAATTTAAGTGTTGCCTATCGTTTACGAGAGATTAAACCGGGGGAGCCTGTTTTGGATTGGCCTACAAGAAAGAGGGTGGCTTTAGGCACAGCCCGTGGCTTAGAGTACCTACATGAACATTGTAATCCTAAGATCATTCATCGAGATGTTAAGGCGGCTAATGTATTACTTGACGAAGATTTTGAAGCAGTTGTTGGACAGCGGGCAATTGATTTCTCACGATTGGAAGAAGAAGATGATGTTTTGTTGCTCGACCATGTCAAGAAGTTGGAAAGGGAAAAGAGACTGGATGCAATAGTAGATGGAAATCTGGATAGTAGTTACAACATCCAAGAGGTAGAAATGATGATCCAAGTTGCACTGCTTTGTACCCAAGGATCCCCTGAAGATCGTCCACTAATGTCGGAGGTGGTACGTATGCTGGAAGGAGAGGGTCTGGCTGAGCGGTGGGAAGAATGGCAGCATGTGGAAGTTACTCGCAGGCAAGAGTACGAGAGACTACTACAAAGGAGATATGATTGGGGAGAAGACTCGGTTTATAACCAGGATGCTATTGAGTTATCTGGTGGACGATGA

Protein Analysis

557

Amino Acids

62.27

Weight (kDa)

5.49

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 26 - 65 4.1e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 84 - 176 6.3e-11 Leucine-rich repeat region
LRR_8 PF13855 93 - 152 5.4e-10 Leucine rich repeat
Pkinase PF00069 289 - 438 1.6e-22 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 291 - 431 1e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1638
AarI CACCTGC 1 cut(s) 773
AasI GACNNNNNNGTC 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 773
AccB7I CCANNNNNTGG 1 cut(s) 665
AccBSI CCGCTC 1 cut(s) 1543
AccI GTMKAC 1 cut(s) 742
AciI CCGC 3 cut(s) 1253, 1300, 1543
AclWI GGATC 5 cut(s) 71, 652, 1441, 1470, 1483
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 2 cut(s) 364, 1099
AcuI CTGAAG 2 cut(s) 491, 1503
AfaI GTAC 4 cut(s) 1205, 1468, 1512, 1589
AfiI CCNNNNNNNGG 2 cut(s) 263, 665
AhdI GACNNNNNGTC 1 cut(s) 441
AjnI CCWGG 2 cut(s) 970, 1641
AjuI GAANNNNNNNTTGG 2 cut(s) 1275, 1307
AleI CACNNNNGTG 1 cut(s) 618
Alw26I GTCTC 2 cut(s) 1375, 1588
AlwI GGATC 5 cut(s) 71, 652, 1441, 1470, 1483
AoxI GGCC 2 cut(s) 354, 1157
ApeKI GCWGC 3 cut(s) 844, 983, 1558
ApoI RAATTY 2 cut(s) 364, 1099
ArsI GACNNNNNNTTYG 2 cut(s) 1262, 1294
AseI ATTAAT 1 cut(s) 501
AspS9I GGNCC 1 cut(s) 177
AsuC2I CCSGG 1 cut(s) 1137
AsuHPI GGTGA 3 cut(s) 117, 329, 797
AsuNHI GCTAGC 1 cut(s) 50
AvaII GGWCC 1 cut(s) 177
BaeI ACNNNNGTAYC 2 cut(s) 621, 654
BalI TGGCCA 1 cut(s) 356
BamHI GGATCC 1 cut(s) 1475
BbsI GAAGAC 1 cut(s) 1632
BbvI GCAGC 3 cut(s) 856, 995, 1570
BccI CCATC 2 cut(s) 13, 1394
BceAI ACGGC 1 cut(s) 965
BciT130I CCWGG 2 cut(s) 972, 1643
BciVI GTATCC 1 cut(s) 1095
BcnI CCSGG 1 cut(s) 1137
BcoDI GTCTC 2 cut(s) 1375, 1588
BfaI CTAG 2 cut(s) 51, 881
BfmI CTRYAG 1 cut(s) 852
BfuAI ACCTGC 1 cut(s) 773
BfuI GTATCC 1 cut(s) 1095
BglII AGATCT 1 cut(s) 340
BisI GCNGC 4 cut(s) 845, 984, 1254, 1559
BlpI GCTNAGC 1 cut(s) 1539
BlsI GCNGC 4 cut(s) 846, 985, 1255, 1560
Bme1390I CCNGG 3 cut(s) 972, 1137, 1643
Bme18I GGWCC 1 cut(s) 177
BmeRI GACNNNNNGTC 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 4 cut(s) 247, 1031, 1143, 1477
BmrFI CCNGG 3 cut(s) 972, 1137, 1643
BmsI GCATC 6 cut(s) 79, 474, 632, 970, 1378, 1636
BmtI GCTAGC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 1632
Bpu10I CCTNAGC 1 cut(s) 543
Bpu1102I GCTNAGC 1 cut(s) 1539
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 1137
BsaAI YACGTR 1 cut(s) 1514
BsaBI GATNNNNATC 1 cut(s) 1404
BsaJI CCNNGG 5 cut(s) 406, 971, 1136, 1192, 1471
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 665
Bse1I ACTGG 4 cut(s) 149, 319, 391, 1389
Bse3DI GCAATG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 1404
BseBI CCWGG 2 cut(s) 972, 1643
BseDI CCNNGG 5 cut(s) 406, 971, 1136, 1192, 1471
BseGI GGATG 5 cut(s) 465, 623, 1393, 1425, 1651
BseJI GATNNNNATC 1 cut(s) 1404
BseLI CCNNNNNNNGG 2 cut(s) 263, 665
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 3 cut(s) 534, 541, 1530
BseNI ACTGG 4 cut(s) 149, 319, 391, 1389
BseXI GCAGC 3 cut(s) 856, 995, 1570
BshFI GGCC 2 cut(s) 356, 1159
BsiSI CCGG 1 cut(s) 1136
BslI CCNNNNNNNGG 2 cut(s) 263, 665
BsmAI GTCTC 2 cut(s) 1375, 1588
BsmI GAATGC 2 cut(s) 58, 806
BsnI GGCC 2 cut(s) 356, 1159
Bsp143I GATC 7 cut(s) 76, 340, 644, 1230, 1446, 1475, 1486
Bsp1720I GCTNAGC 1 cut(s) 1539
BspACI CCGC 3 cut(s) 1253, 1300, 1543
BspANI GGCC 2 cut(s) 356, 1159
BspCNI CTCAG 3 cut(s) 535, 540, 1531
BspLI GGNNCC 4 cut(s) 247, 1031, 1143, 1477
BspMI ACCTGC 1 cut(s) 773
BspOI GCTAGC 1 cut(s) 54
BspPI GGATC 5 cut(s) 71, 652, 1441, 1470, 1483
BsrBI CCGCTC 1 cut(s) 1543
BsrDI GCAATG 1 cut(s) 293
BsrI ACTGG 4 cut(s) 149, 319, 391, 1389
BssECI CCNNGG 5 cut(s) 406, 971, 1136, 1192, 1471
BssMI GATC 7 cut(s) 76, 340, 644, 1230, 1446, 1475, 1486
BssT1I CCWWGG 2 cut(s) 406, 1471
Bst2UI CCWGG 2 cut(s) 972, 1643
Bst4CI ACNGT 3 cut(s) 96, 596, 617
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 1514
BstC8I GCNNGC 6 cut(s) 52, 56, 513, 849, 1302, 1580
BstDEI CTNAG 5 cut(s) 527, 543, 1198, 1227, 1539
BstDSI CCRYGG 1 cut(s) 1192
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 5 cut(s) 465, 623, 1393, 1425, 1651
BstKTI GATC 7 cut(s) 79, 343, 647, 1233, 1449, 1478, 1489
BstMAI GTCTC 2 cut(s) 1375, 1588
BstMBI GATC 7 cut(s) 76, 340, 644, 1230, 1446, 1475, 1486
BstMWI GCNNNNNNNGC 3 cut(s) 41, 398, 521
BstNI CCWGG 2 cut(s) 972, 1643
BstNSI RCATGY 1 cut(s) 1565
BstSCI CCNGG 3 cut(s) 970, 1135, 1641
BstSFI CTRYAG 1 cut(s) 852
BstSNI TACGTA 1 cut(s) 1514
BstV1I GCAGC 3 cut(s) 856, 995, 1570
BstV2I GAAGAC 1 cut(s) 1632
BstX2I RGATCY 4 cut(s) 76, 340, 644, 1475
BstXI CCANNNNNNTGG 1 cut(s) 174
BstYI RGATCY 4 cut(s) 76, 340, 644, 1475
BsuI GTATCC 1 cut(s) 1095
BsuRI GGCC 2 cut(s) 356, 1159
BtgI CCRYGG 1 cut(s) 1192
BtsCI GGATG 5 cut(s) 465, 623, 1393, 1425, 1651
BtsI GCAGTG 1 cut(s) 1457
BtsIMutI CAGTG 4 cut(s) 92, 195, 535, 1457
BveI ACCTGC 1 cut(s) 773
Cac8I GCNNGC 6 cut(s) 52, 56, 513, 849, 1302, 1580
Cfr13I GGNCC 1 cut(s) 177
Csp6I GTAC 4 cut(s) 1204, 1467, 1511, 1588
CviAII CATG 5 cut(s) 168, 1093, 1211, 1355, 1562
CviQI GTAC 4 cut(s) 1204, 1467, 1511, 1588
DdeI CTNAG 5 cut(s) 527, 543, 1198, 1227, 1539
DpnI GATC 7 cut(s) 78, 342, 646, 1232, 1448, 1477, 1488
DpnII GATC 7 cut(s) 76, 340, 644, 1230, 1446, 1475, 1486
DrdI GACNNNNNNGTC 1 cut(s) 206
DriI GACNNNNNGTC 1 cut(s) 441
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 285
Eam1105I GACNNNNNGTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 285
Eco105I TACGTA 1 cut(s) 1514
Eco130I CCWWGG 2 cut(s) 406, 1471
Eco47I GGWCC 1 cut(s) 177
Eco57I CTGAAG 2 cut(s) 491, 1503
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 970, 1641
EcoT14I CCWWGG 2 cut(s) 406, 1471
ErhI CCWWGG 2 cut(s) 406, 1471
FaeI CATG 5 cut(s) 171, 1096, 1214, 1358, 1565
FatI CATG 5 cut(s) 167, 1092, 1210, 1354, 1561
FauI CCCGC 1 cut(s) 1293
FblI GTMKAC 1 cut(s) 742
Fnu4HI GCNGC 4 cut(s) 845, 984, 1254, 1559
FokI GGATG 5 cut(s) 452, 610, 1400, 1412, 1658
Fsp4HI GCNGC 4 cut(s) 845, 984, 1254, 1559
FspBI CTAG 2 cut(s) 51, 881
GluI GCNGC 4 cut(s) 845, 984, 1254, 1559
HaeIII GGCC 2 cut(s) 356, 1159
HapII CCGG 1 cut(s) 1136
Hin1II CATG 5 cut(s) 171, 1096, 1214, 1358, 1565
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HindIII AAGCTT 2 cut(s) 422, 662
HinfI GANTC 6 cut(s) 148, 442, 473, 559, 967, 1628
HpaII CCGG 1 cut(s) 1136
HphI GGTGA 3 cut(s) 117, 329, 797
Hpy166II GTNNAC 7 cut(s) 724, 743, 793, 1024, 1121, 1493, 1667
Hpy188I TCNGA 6 cut(s) 345, 417, 558, 628, 925, 1504
Hpy188III TCNNGA 6 cut(s) 433, 642, 1241, 1317, 1360, 1409
Hpy8I GTNNAC 7 cut(s) 724, 743, 793, 1024, 1121, 1493, 1667
HpyAV CCTTC 3 cut(s) 792, 1099, 1517
HpyCH4III ACNGT 3 cut(s) 96, 596, 617
HpyCH4IV ACGT 1 cut(s) 1513
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 398, 521
HpyF3I CTNAG 5 cut(s) 527, 543, 1198, 1227, 1539
HpySE526I ACGT 1 cut(s) 1513
Hsp92II CATG 5 cut(s) 171, 1096, 1214, 1358, 1565
Kzo9I GATC 7 cut(s) 76, 340, 644, 1230, 1446, 1475, 1486
LmnI GCTCC 4 cut(s) 22, 462, 680, 1141
Lsp1109I GCAGC 3 cut(s) 856, 995, 1570
LweI GCATC 6 cut(s) 79, 474, 632, 970, 1378, 1636
MaeI CTAG 2 cut(s) 51, 881
MaeII ACGT 1 cut(s) 1513
MaeIII GTNAC 3 cut(s) 217, 1418, 1570
MalI GATC 7 cut(s) 78, 342, 646, 1232, 1448, 1477, 1488
MbiI CCGCTC 1 cut(s) 1543
MboI GATC 7 cut(s) 76, 340, 644, 1230, 1446, 1475, 1486
MfeI CAATTG 1 cut(s) 1305
MflI RGATCY 4 cut(s) 76, 340, 644, 1475
MlsI TGGCCA 1 cut(s) 356
MluNI TGGCCA 1 cut(s) 356
MlyI GAGTC 3 cut(s) 451, 976, 1622
MmeI TCCRAC 5 cut(s) 658, 667, 1273, 1347, 1482
MnlI CCTC 9 cut(s) 99, 527, 683, 707, 828, 1164, 1426, 1498, 1522
Mox20I TGGCCA 1 cut(s) 356
MscI TGGCCA 1 cut(s) 356
MseI TTAA 7 cut(s) 240, 383, 501, 945, 1103, 1131, 1248
MslI CAYNNNNRTG 2 cut(s) 618, 1242
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 2 cut(s) 847, 1300
MspI CCGG 1 cut(s) 1136
MspR9I CCNGG 3 cut(s) 972, 1137, 1643
MunI CAATTG 1 cut(s) 1305
Mva1269I GAATGC 2 cut(s) 58, 806
MvaI CCWGG 2 cut(s) 972, 1643
MwoI GCNNNNNNNGC 3 cut(s) 41, 398, 521
NciI CCSGG 1 cut(s) 1137
NdeII GATC 7 cut(s) 76, 340, 644, 1230, 1446, 1475, 1486
NheI GCTAGC 1 cut(s) 50
NlaIII CATG 5 cut(s) 171, 1096, 1214, 1358, 1565
NlaIV GGNNCC 4 cut(s) 247, 1031, 1143, 1477
NspI RCATGY 1 cut(s) 1565
OliI CACNNNNGTG 1 cut(s) 618
PaqCI CACCTGC 1 cut(s) 773
PctI GAATGC 2 cut(s) 58, 806
PfeI GAWTC 3 cut(s) 148, 473, 559
PflFI GACNNNGTC 1 cut(s) 1355
PflMI CCANNNNNTGG 1 cut(s) 665
PkrI GCNGC 4 cut(s) 846, 985, 1255, 1560
PleI GAGTC 3 cut(s) 450, 975, 1622
PpsI GAGTC 3 cut(s) 450, 975, 1622
Ppu21I YACGTR 1 cut(s) 1514
PshBI ATTAAT 1 cut(s) 501
PsiI TTATAA 1 cut(s) 1638
Psp6I CCWGG 2 cut(s) 970, 1641
PspGI CCWGG 2 cut(s) 970, 1641
PspN4I GGNNCC 4 cut(s) 247, 1031, 1143, 1477
PspPI GGNCC 1 cut(s) 177
PsuI RGATCY 4 cut(s) 76, 340, 644, 1475
PsyI GACNNNGTC 1 cut(s) 1355
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 4 cut(s) 1205, 1468, 1512, 1589
RsaNI GTAC 4 cut(s) 1204, 1467, 1511, 1588
RseI CAYNNNNRTG 2 cut(s) 618, 1242
SaqAI TTAA 7 cut(s) 240, 383, 501, 945, 1103, 1131, 1248
SatI GCNGC 4 cut(s) 845, 984, 1254, 1559
Sau3AI GATC 7 cut(s) 76, 340, 644, 1230, 1446, 1475, 1486
Sau96I GGNCC 1 cut(s) 177
SchI GAGTC 3 cut(s) 451, 976, 1622
ScrFI CCNGG 3 cut(s) 972, 1137, 1643
SfaNI GCATC 6 cut(s) 79, 474, 632, 970, 1378, 1636
SfcI CTRYAG 1 cut(s) 852
SinI GGWCC 1 cut(s) 177
SmiMI CAYNNNNRTG 2 cut(s) 618, 1242
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SnaBI TACGTA 1 cut(s) 1514
SsiI CCGC 3 cut(s) 1253, 1300, 1543
SspI AATATT 1 cut(s) 232
SspMI CTAG 2 cut(s) 51, 881
StyD4I CCNGG 3 cut(s) 970, 1135, 1641
StyI CCWWGG 2 cut(s) 406, 1471
TaaI ACNGT 3 cut(s) 96, 596, 617
TaiI ACGT 1 cut(s) 1516
TaqI TCGA 2 cut(s) 1240, 1350
TaqII GACCGA 3 cut(s) 800, 810, 971
TauI GCSGC 1 cut(s) 1256
TfiI GAWTC 3 cut(s) 148, 473, 559
Tru1I TTAA 7 cut(s) 240, 383, 501, 945, 1103, 1131, 1248
Tru9I TTAA 7 cut(s) 240, 383, 501, 945, 1103, 1131, 1248
TscAI CASTG 4 cut(s) 99, 202, 535, 1464
TseI GCWGC 3 cut(s) 844, 983, 1558
TspDTI ATGAA 6 cut(s) 90, 102, 685, 1081, 1226, 1227
TspRI CASTG 4 cut(s) 99, 202, 535, 1464
Tth111I GACNNNGTC 1 cut(s) 1355
Van91I CCANNNNNTGG 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 177
VspI ATTAAT 1 cut(s) 501
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 2 cut(s) 364, 1099
XceI RCATGY 1 cut(s) 1565
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XmiI GTMKAC 1 cut(s) 742
XspI CTAG 2 cut(s) 51, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.