Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002426

Physical Location & Seq

Genomic Coordinates Reverse (-)

17146274 .. 17148640

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0184300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGATGGCCTGTTCTTCTGCACATCTCTGTCCCTCATCTTCATCCTCTTGATCACCATCAAATTCCTATTTCGAACAAAACATCACAGTCACACAAACCTCCCACCAAGCCCTCCAACTGTACCAATTATAGGCCATCTCCATCTCCTACAACCGTTAGTCCATCGGACCTTCCACCATCTCTCACAGATATATGGCCCTGTTTTCTCCCTCTGGTTTGGCTCACATCGTGTGGTTGTGGTCTCTTCGTCCTCAATTGCTGAAGAATGTTTCACCAAAAATGATATAGTTCTGGCAAACCGTCCTCGCTTCATGCTCGCAGGCAAGCACATGGGCTACAACTACACCAATGTGGTGGAGTCCCCATATGGGGATCACTGGCGCAACCTACGCCGCATTAGCACTACCGAAATCTACTCTCCCAGTAGGCTCAACATGTTCTCGAGCATCAGGACGGACGAAGTCAAGCAATTGCTGTTCAAACTCTCACACAACTCCCGTGAAGATTTTGCAAAGGTGGACTTGCGATCCATGCTCTCTGAGCTGACATTTAACATCATAATGACAATGGTGGCAGGGAAGAGGTATTATGGAGATGACATGTCAGACAAAGAAGAGGCCAAGCAGTTCAGAGATCTCATGAGTGAGGGTTTGTCGTATGCTGGTGCAACAAACCCCTCAGACTTTGTGCCTATTTTGAAATGGTTTGGGGGTGGTGGGTTTGAGAAGAAGGTGATGGACTTGGGTAAGAGGATGGATGCTTTCTTGCAAGGTTTGATCGATGAGCAGAATCCGAGTAAAACTACTTCAGATCGTACAGCAAATACTTTGATCCACCATTTACTTTCTCTGCAAGAATCACAGCCTGAGTATTACACTGACCAAATTATCAAAGGGCTTATACTGATCATGCTTTTGGCGGGTACTGATACATCATCCCTAACAATGGAATGGGCCATGTCCAATCTGCTCAACCATCCTGAGGTGCTAAAAAGGGCTAGAGCTGAACTGGATGCTGAATTTGGACAAGAACGCTTAATAGACGAACCAGATATCTTCAAACTACCTTACCTACAAAGTATCATCTCTGAGACTCTCCGATTGTACCCTACAGCACCACTACTAGTACCACATTATACATCTGATGACTGCACCATTGGAGGATTTGACGTGCCATGTGACACGATAGTAATGATCAATGTGTGGGCCATACACAGAGATCCAACGTTGTGGGATGATCCTGAAAGCTTCAAGCCTGAGAGGTTTGCAAATGGTGGAGAAGAGCCATACAAGTTCATGCCATTTGGACAAGGAAGAAGGGCTTGCCCTGGCATGGGCTTGGCCCAACGTGTGGTTGGCTTGGCTTTGGGATCATTGATTCAATGTTTCGATTGGGAAAAAGTCAGTGAGATGAAGGTTGATATGACTGAAGGTAAAGGACTCTCAATGCCTAAAGCTGTGCCACTGGAGGCTATGTGCAAAGCACGCCCAATTGTGAACAAGGTTCTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

504

Amino Acids

57.09

Weight (kDa)

6.29

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	35 - 485	1.6e-101	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10290 AT5G10290 AT5G65240 AT5G65240
fragaria_vesca	FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640
malus_domestica	MD01G1032200.v1.1 MD15G1322900.v1.1 MD15G1323000.v1.1
prunus_persica	Prupe.6G189000_v2.0.a1 Prupe.6G189000_v2.0.a1
pyrus_communis	pycom01g05940 pycom15g28350 pycom15g28360 pycom15g28370 pycom15g28410 pycom15g28430
rosa_chinensis	RchiOBHm_Chr2g0113091
rosa_laevigata	RLG00000018037
rosa_multiflora	Rmu_sc0005949.1_g000009 Rmu_sc0018337.1_g000002 Rmu_sc0034368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130900
rosa_rugosa	Rorug02G0183900 Rorug02G0184000 Rorug02G0184100 Rorug02G0184200 Rorug02G0184300 Rorug02G0184400 Rorug02G0184500 Rorug02G0184600
rosa_samantha	Rh2AG239000 Rh2BG252700 Rh2CG243200 Rh2DG247100
rosa_wichuraiana	Rw2G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1351
AciI	CCGC	2 cut(s)	394, 920
AclI	AACGTT	1 cut(s)	1226
AclWI	GGATC	6 cut(s)	381, 522, 826, 1214, 1232, 1378
AcsI	RAATTY	2 cut(s)	62, 1019
AcuI	CTGAAG	3 cut(s)	282, 792, 1449
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	5 cut(s)	123, 817, 925, 1106, 1128
AfiI	CCNNNNNNNGG	8 cut(s)	131, 369, 370, 946, 982, 1333, 1334, 1351
AflIII	ACRYGT	3 cut(s)	435, 600, 1348
AgsI	TTSAA	5 cut(s)	481, 700, 1060, 1252, 1382
AhlI	ACTAGT	1 cut(s)	1123
AjiI	CACGTC	1 cut(s)	1171
AjnI	CCWGG	1 cut(s)	1327
AleI	CACNNNNGTG	1 cut(s)	350
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	544, 1004, 1248, 1457
AluI	AGCT	4 cut(s)	544, 1004, 1248, 1457
Alw26I	GTCTC	2 cut(s)	247, 1085
AlwI	GGATC	6 cut(s)	381, 522, 826, 1214, 1232, 1378
Ama87I	CYCGRG	1 cut(s)	442
AoxI	GGCC	7 cut(s)	7, 133, 196, 618, 954, 1206, 1341
ApoI	RAATTY	2 cut(s)	62, 1019
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	5 cut(s)	168, 197, 954, 1206, 1342
AsuHPI	GGTGA	3 cut(s)	46, 265, 745
AsuII	TTCGAA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	981
BarI	GAAGNNNNNNTAC	2 cut(s)	790, 822
BccI	CCATC	8 cut(s)	65, 144, 150, 171, 186, 730, 748, 984
BciT130I	CCWGG	1 cut(s)	1329
BclI	TGATCA	3 cut(s)	51, 906, 1194
BcoDI	GTCTC	2 cut(s)	247, 1085
BcuI	ACTAGT	1 cut(s)	1123
BfaI	CTAG	2 cut(s)	999, 1124
BfmI	CTRYAG	1 cut(s)	1110
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	1329
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	442
BmgBI	CACGTC	1 cut(s)	1171
BmgT120I	GGNCC	5 cut(s)	168, 197, 954, 1206, 1342
BmrFI	CCNGG	1 cut(s)	1329
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	456, 748, 1003
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	1487
Bpu14I	TTCGAA	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	780
BsaBI	GATNNNNATC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	1327
BsaXI	ACNNNNNCTCC	2 cut(s)	1460, 1490
Bsc4I	CCNNNNNNNGG	8 cut(s)	131, 369, 370, 946, 982, 1333, 1334, 1351
Bse1I	ACTGG	4 cut(s)	383, 423, 1014, 1470
Bse21I	CCTNAGG	1 cut(s)	981
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	1329
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	1 cut(s)	1327
BseGI	GGATG	8 cut(s)	10, 42, 759, 763, 935, 976, 1018, 1240
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	8 cut(s)	131, 369, 370, 946, 982, 1333, 1334, 1351
BseMII	CTCAG	6 cut(s)	531, 693, 858, 972, 1080, 1248
BseNI	ACTGG	4 cut(s)	383, 423, 1014, 1470
BsgI	GTGCAG	2 cut(s)	4, 1135
BshFI	GGCC	7 cut(s)	9, 135, 198, 620, 956, 1208, 1343
BshVI	ATCGAT	1 cut(s)	780
BsiHKCI	CYCGRG	1 cut(s)	442
BslFI	GGGAC	2 cut(s)	16, 346
BslI	CCNNNNNNNGG	8 cut(s)	131, 369, 370, 946, 982, 1333, 1334, 1351
BsmAI	GTCTC	2 cut(s)	247, 1085
BsmFI	GGGAC	2 cut(s)	16, 346
BsnI	GGCC	7 cut(s)	9, 135, 198, 620, 956, 1208, 1343
Bso31I	GGTCTC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	442
Bsp119I	TTCGAA	1 cut(s)	73
BspACI	CCGC	2 cut(s)	394, 920
BspANI	GGCC	7 cut(s)	9, 135, 198, 620, 956, 1208, 1343
BspCNI	CTCAG	6 cut(s)	532, 692, 859, 973, 1081, 1249
BspDI	ATCGAT	1 cut(s)	780
BspHI	TCATGA	1 cut(s)	639
BspPI	GGATC	6 cut(s)	381, 522, 826, 1214, 1232, 1378
BspQI	GCTCTTC	1 cut(s)	1275
BspT104I	TTCGAA	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	247
BsrI	ACTGG	4 cut(s)	383, 423, 1014, 1470
BssECI	CCNNGG	1 cut(s)	1327
Bst2UI	CCWGG	1 cut(s)	1329
Bst4CI	ACNGT	4 cut(s)	89, 121, 156, 302
Bst6I	CTCTTC	4 cut(s)	250, 575, 609, 1275
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	5 cut(s)	318, 322, 326, 1324, 1486
BstDEI	CTNAG	7 cut(s)	540, 679, 867, 981, 1089, 1257, 1512
BstF5I	GGATG	8 cut(s)	10, 42, 759, 763, 935, 976, 1018, 1240
BstHHI	GCGC	1 cut(s)	384
BstMAI	GTCTC	2 cut(s)	247, 1085
BstMWI	GCNNNNNNNGC	5 cut(s)	390, 399, 532, 541, 1485
BstNI	CCWGG	1 cut(s)	1329
BstNSI	RCATGY	2 cut(s)	439, 604
BstSCI	CCNGG	1 cut(s)	1327
BstSFI	CTRYAG	1 cut(s)	1110
BstX2I	RGATCY	2 cut(s)	634, 1219
BstXI	CCANNNNNNTGG	2 cut(s)	355, 1230
BstYI	RGATCY	2 cut(s)	634, 1219
Bsu15I	ATCGAT	1 cut(s)	780
Bsu36I	CCTNAGG	1 cut(s)	981
BsuRI	GGCC	7 cut(s)	9, 135, 198, 620, 956, 1208, 1343
BsuTUI	ATCGAT	1 cut(s)	780
BtrI	CACGTC	1 cut(s)	1171
BtsCI	GGATG	8 cut(s)	10, 42, 759, 763, 935, 976, 1018, 1240
BtsIMutI	CAGTG	4 cut(s)	376, 876, 1411, 1463
Cac8I	GCNNGC	5 cut(s)	318, 322, 326, 1324, 1486
CciI	TCATGA	1 cut(s)	639
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	5 cut(s)	168, 197, 954, 1206, 1342
ClaI	ATCGAT	1 cut(s)	780
Csp6I	GTAC	5 cut(s)	122, 816, 924, 1105, 1127
CviQI	GTAC	5 cut(s)	122, 816, 924, 1105, 1127
DdeI	CTNAG	7 cut(s)	540, 679, 867, 981, 1089, 1257, 1512
DraIII	CACNNNGTG	1 cut(s)	230
Eam1104I	CTCTTC	4 cut(s)	250, 575, 609, 1275
EarI	CTCTTC	4 cut(s)	250, 575, 609, 1275
Eco31I	GGTCTC	1 cut(s)	247
Eco32I	GATATC	1 cut(s)	1054
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	3 cut(s)	282, 792, 1449
Eco81I	CCTNAGG	1 cut(s)	981
Eco88I	CYCGRG	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	1327
EcoRV	GATATC	1 cut(s)	1054
FalI	AAGNNNNNCTT	4 cut(s)	506, 538, 1306, 1338
FaqI	GGGAC	2 cut(s)	16, 346
FauI	CCCGC	1 cut(s)	913
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	3 cut(s)	51, 906, 1194
Fnu4HI	GCNGC	1 cut(s)	394
FokI	GGATG	8 cut(s)	17, 29, 766, 770, 922, 963, 1025, 1247
Fsp4HI	GCNGC	1 cut(s)	394
FspBI	CTAG	2 cut(s)	999, 1124
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	1487
HaeIII	GGCC	7 cut(s)	9, 135, 198, 620, 956, 1208, 1343
HhaI	GCGC	1 cut(s)	384
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	1246
HinfI	GANTC	6 cut(s)	359, 790, 857, 1093, 1378, 1440
HphI	GGTGA	3 cut(s)	46, 265, 745
Hpy166II	GTNNAC	2 cut(s)	520, 1498
Hpy188III	TCNNGA	6 cut(s)	49, 442, 451, 640, 980, 1241
Hpy8I	GTNNAC	2 cut(s)	520, 1498
HpyAV	CCTTC	5 cut(s)	181, 724, 1311, 1408, 1424
HpyCH4III	ACNGT	4 cut(s)	89, 121, 156, 302
HpyCH4IV	ACGT	3 cut(s)	1170, 1226, 1348
HpyCH4V	TGCA	8 cut(s)	21, 512, 668, 769, 853, 1152, 1268, 1479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	390, 399, 532, 541, 1485
HpyF3I	CTNAG	7 cut(s)	540, 679, 867, 981, 1089, 1257, 1512
HpySE526I	ACGT	3 cut(s)	1170, 1226, 1348
HspAI	GCGC	1 cut(s)	382
Ksp22I	TGATCA	3 cut(s)	51, 906, 1194
LguI	GCTCTTC	1 cut(s)	1275
LweI	GCATC	3 cut(s)	456, 748, 1003
MaeI	CTAG	2 cut(s)	999, 1124
MaeII	ACGT	3 cut(s)	1170, 1226, 1348
MaeIII	GTNAC	2 cut(s)	89, 1178
MfeI	CAATTG	3 cut(s)	255, 470, 1491
MflI	RGATCY	2 cut(s)	634, 1219
MluCI	AATT	7 cut(s)	62, 126, 255, 470, 885, 1019, 1491
MlyI	GAGTC	3 cut(s)	368, 1087, 1434
MmeI	TCCRAC	2 cut(s)	140, 1247
MseI	TTAA	2 cut(s)	552, 1037
MslI	CAYNNNNRTG	2 cut(s)	350, 560
MspR9I	CCNGG	1 cut(s)	1329
MunI	CAATTG	3 cut(s)	255, 470, 1491
MvaI	CCWGG	1 cut(s)	1329
MwoI	GCNNNNNNNGC	5 cut(s)	390, 399, 532, 541, 1485
NdeI	CATATG	1 cut(s)	367
NmuCI	GTSAC	2 cut(s)	89, 1178
NspI	RCATGY	2 cut(s)	439, 604
NspV	TTCGAA	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	442
PagI	TCATGA	1 cut(s)	639
PciI	ACATGT	2 cut(s)	435, 600
PciSI	GCTCTTC	1 cut(s)	1275
PfeI	GAWTC	3 cut(s)	790, 857, 1378
PflFI	GACNNNGTC	1 cut(s)	461
PflMI	CCANNNNNTGG	1 cut(s)	1351
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	3 cut(s)	367, 1087, 1434
PpsI	GAGTC	3 cut(s)	367, 1087, 1434
PscI	ACATGT	2 cut(s)	435, 600
Psp1406I	AACGTT	1 cut(s)	1226
Psp6I	CCWGG	1 cut(s)	1327
PspGI	CCWGG	1 cut(s)	1327
PspPI	GGNCC	5 cut(s)	168, 197, 954, 1206, 1342
PsuI	RGATCY	2 cut(s)	634, 1219
PsyI	GACNNNGTC	1 cut(s)	461
RsaI	GTAC	5 cut(s)	123, 817, 925, 1106, 1128
RsaNI	GTAC	5 cut(s)	122, 816, 924, 1105, 1127
RseI	CAYNNNNRTG	2 cut(s)	350, 560
SapI	GCTCTTC	1 cut(s)	1275
SaqAI	TTAA	2 cut(s)	552, 1037
SatI	GCNGC	1 cut(s)	394
Sau96I	GGNCC	5 cut(s)	168, 197, 954, 1206, 1342
SchI	GAGTC	3 cut(s)	368, 1087, 1434
ScrFI	CCNGG	1 cut(s)	1329
SfaNI	GCATC	3 cut(s)	456, 748, 1003
SfcI	CTRYAG	1 cut(s)	1110
Sfr274I	CTCGAG	1 cut(s)	442
SfuI	TTCGAA	1 cut(s)	73
SinI	GGWCC	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	442
SmiMI	CAYNNNNRTG	2 cut(s)	350, 560
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
SpeI	ACTAGT	1 cut(s)	1123
Sse9I	AATT	7 cut(s)	62, 126, 255, 470, 885, 1019, 1491
SsiI	CCGC	2 cut(s)	394, 920
SspMI	CTAG	2 cut(s)	999, 1124
StyD4I	CCNGG	1 cut(s)	1327
TaaI	ACNGT	4 cut(s)	89, 121, 156, 302
TaiI	ACGT	3 cut(s)	1173, 1229, 1351
TaqI	TCGA	4 cut(s)	73, 443, 780, 1389
TasI	AATT	7 cut(s)	62, 126, 255, 470, 885, 1019, 1491
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	3 cut(s)	790, 857, 1378
Tru1I	TTAA	2 cut(s)	552, 1037
Tru9I	TTAA	2 cut(s)	552, 1037
TscAI	CASTG	4 cut(s)	383, 883, 1411, 1470
TseFI	GTSAC	2 cut(s)	89, 1178
Tsp45I	GTSAC	2 cut(s)	89, 1178
TspDTI	ATGAA	4 cut(s)	31, 301, 1285, 1427
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	4 cut(s)	383, 883, 1411, 1470
Tth111I	GACNNNGTC	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	1351
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	2 cut(s)	62, 1019
XceI	RCATGY	2 cut(s)	439, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1352
XhoI	CTCGAG	1 cut(s)	442
XspI	CTAG	2 cut(s)	999, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.