Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034368.1

Orthogroup ID

OG0002426

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1747

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034368.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 272 bp

atggagctactatttgcagttctggcacttgctagcttgcattctttcgtattgccagatccacaaggagatgccctgtattcattgaggacttcattgattacttcacccaatcagctcaaggactggaatcccaaccaagtcaatccatgcacttggtccaatgtgaattgtgacactgacaacaatgtcatttctgtaacattgtcaaatattggatttaatggaaccttatcccctaaagtaggaaacctgaaaactcttcaaacact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

91

Amino Acids

9.9

Weight (kDa)

4.82

Isoelectric Point (pI)

24.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10290 AT5G10290 AT5G65240 AT5G65240
fragaria_vesca	FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640
malus_domestica	MD01G1032200.v1.1 MD15G1322900.v1.1 MD15G1323000.v1.1
prunus_persica	Prupe.6G189000_v2.0.a1 Prupe.6G189000_v2.0.a1
pyrus_communis	pycom01g05940 pycom15g28350 pycom15g28360 pycom15g28370 pycom15g28410 pycom15g28430
rosa_chinensis	RchiOBHm_Chr2g0113091
rosa_laevigata	RLG00000018037
rosa_multiflora	Rmu_sc0005949.1_g000009 Rmu_sc0018337.1_g000002 Rmu_sc0034368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130900
rosa_rugosa	Rorug02G0183900 Rorug02G0184000 Rorug02G0184100 Rorug02G0184200 Rorug02G0184300 Rorug02G0184400 Rorug02G0184500 Rorug02G0184600
rosa_samantha	Rh2AG239000 Rh2BG252700 Rh2CG243200 Rh2DG247100
rosa_wichuraiana	Rw2G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	3 cut(s)	7, 36, 118
AluI	AGCT	3 cut(s)	7, 36, 118
AlwI	GGATC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	99
AsuNHI	GCTAGC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	229
BmsI	GCATC	1 cut(s)	61
BmtI	GCTAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	229
BspOI	GCTAGC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	34, 38
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	34, 38
Cfr13I	GGNCC	1 cut(s)	159
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	3 cut(s)	7, 36, 118
CviKI_1	RGCY	3 cut(s)	7, 36, 118
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	159
EcoNI	CCTNNNNNAGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	153
FaiI	YATR	1 cut(s)	151
FatI	CATG	1 cut(s)	149
FspBI	CTAG	1 cut(s)	33
Hin1II	CATG	1 cut(s)	153
HinfI	GANTC	1 cut(s)	130
HphI	GGTGA	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	17, 40, 153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	8, 69, 89, 112, 266
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	173, 199
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	1 cut(s)	169
MnlI	CCTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	1 cut(s)	58
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	173
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	159
SetI	ASST	5 cut(s)	9, 38, 120, 233, 255
SfaNI	GCATC	1 cut(s)	61
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	169
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	33
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	72, 84
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	243
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.