Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002426

Physical Location & Seq

Genomic Coordinates Reverse (-)

5943952 .. 5945122

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGATAAGTGTAGCTGTTCACAGGAATCTATTAAGACTGATCGCTTTTTGCACGACTCCAACAGAACGCCTTCTAGTGTATCCCTTTATGCAGAATTTAAGTGTTGCCTATCGGTTGCGAGAGATCAAACCTGGCGAGCCCGTTTTGGATTGGTCTACAAGAAAGCAGGTAGCATTAGGCACAGCCCGTGGGCTAGAGTACCTACACGAACATTGTAATCCTAAGATTATTCATCGAGATGTAAAGGCTGCTAATGTATTACTTGATGAAGATTTTGAAGCAGTTGTGGGCGACTTTGGCTTGGCAAAGTTGGTGGATGTTAGAAGGACTAATGTGACAACTCAAGTTCGTGGCACAATGGGTCACATAGCACCTGAATATTTGTCCACTGGGAAGTCATCAGAAAGGACAGATGTTTTTGGCTATGGGATTATGCTTTTAGAACTTGTAACGGGACAACGGGCAATTGATTTTTCACGCTTGGAAGAAGAAGATGATGTTTTGTTGCTTGACCATGTCAAGAAGCTGGAAAGGGAAAAGAGACTGGATGCTATTGTTGACAGCAATTTGAATGATGGTTACAACATCCAAGAGGTAGAAATGATGATCAAAGTTGCACTTCTTTGTACGCAAGGATCTCCTGAAGAACGCCCGTTAATGTCAGAGGTGGTACGGATGCTAGAAGGAGAGGGTCTGGCCGAGCGCTGGGAAGAATGGCAGAATGTTGAGGTTAATCGTAGGGAAGAGTATGAAAGACTACAAAGGAGATTTGACTGGGGAGAAGATTCTGTTTATAATCAGGATGCTATTGAGTTATCTGGTGGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

277

Amino Acids

31.73

Weight (kDa)

5.06

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10290 AT5G10290 AT5G65240 AT5G65240
fragaria_vesca	FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640
malus_domestica	MD01G1032200.v1.1 MD15G1322900.v1.1 MD15G1323000.v1.1
prunus_persica	Prupe.6G189000_v2.0.a1 Prupe.6G189000_v2.0.a1
pyrus_communis	pycom01g05940 pycom15g28350 pycom15g28360 pycom15g28370 pycom15g28410 pycom15g28430
rosa_chinensis	RchiOBHm_Chr2g0113091
rosa_laevigata	RLG00000018037
rosa_multiflora	Rmu_sc0005949.1_g000009 Rmu_sc0018337.1_g000002 Rmu_sc0034368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130900
rosa_rugosa	Rorug02G0183900 Rorug02G0184000 Rorug02G0184100 Rorug02G0184200 Rorug02G0184300 Rorug02G0184400 Rorug02G0184500 Rorug02G0184600
rosa_samantha	Rh2AG239000 Rh2BG252700 Rh2CG243200 Rh2DG247100
rosa_wichuraiana	Rw2G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
Acc36I	ACCTGC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	643
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	3 cut(s)	200, 628, 672
AfeI	AGCGCT	1 cut(s)	704
AfiI	CCNNNNNNNGG	1 cut(s)	705
AgsI	TTSAA	2 cut(s)	278, 571
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	14, 526
AluI	AGCT	2 cut(s)	14, 526
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	1 cut(s)	643
Aor51HI	AGCGCT	1 cut(s)	704
AoxI	GGCC	1 cut(s)	696
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	94
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	705
BanII	GRGCYC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	569
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	90
BclI	TGATCA	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	3 cut(s)	74, 194, 680
BfoI	RGCGCY	1 cut(s)	706
BfuAI	ACCTGC	1 cut(s)	157
BfuI	GTATCC	1 cut(s)	90
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	2 cut(s)	399, 784
BmsI	GCATC	3 cut(s)	538, 666, 793
BmuI	ACTGGG	2 cut(s)	399, 784
BpuEI	CTTGAG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	705
Bse1I	ACTGG	3 cut(s)	394, 549, 779
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	5 cut(s)	322, 553, 585, 681, 808
BseLI	CCNNNNNNNGG	1 cut(s)	705
BseNI	ACTGG	3 cut(s)	394, 549, 779
BseXI	GCAGC	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	705
BshFI	GGCC	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	705
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	39, 123, 606, 635
BspANI	GGCC	1 cut(s)	698
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	643
BsrI	ACTGG	3 cut(s)	394, 549, 779
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	4 cut(s)	39, 123, 606, 635
Bst2UI	CCWGG	1 cut(s)	132
Bst6I	CTCTTC	1 cut(s)	738
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	5 cut(s)	322, 553, 585, 681, 808
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	4 cut(s)	42, 126, 609, 638
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	4 cut(s)	39, 123, 606, 635
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	635
BsuI	GTATCC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	698
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	5 cut(s)	322, 553, 585, 681, 808
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	705
Csp6I	GTAC	3 cut(s)	199, 627, 671
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	1 cut(s)	515
CviJI	RGCY	9 cut(s)	14, 139, 185, 193, 248, 300, 423, 526, 698
CviKI_1	RGCY	9 cut(s)	14, 139, 185, 193, 248, 300, 423, 526, 698
CviQI	GTAC	3 cut(s)	199, 627, 671
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	4 cut(s)	41, 125, 608, 637
DpnII	GATC	4 cut(s)	39, 123, 606, 635
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	141
Eco47III	AGCGCT	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	1 cut(s)	518
FaiI	YATR	7 cut(s)	89, 368, 426, 434, 516, 750, 795
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	5 cut(s)	329, 560, 572, 688, 815
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	3 cut(s)	74, 194, 680
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	1 cut(s)	249
GsaI	CCCAGC	1 cut(s)	709
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	1 cut(s)	698
HhaI	GCGC	1 cut(s)	705
Hin1II	CATG	1 cut(s)	518
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	25, 55, 785
Hpy166II	GTNNAC	5 cut(s)	19, 156, 387, 559, 824
Hpy188I	TCNGA	2 cut(s)	403, 664
Hpy188III	TCNNGA	4 cut(s)	236, 520, 641, 800
Hpy8I	GTNNAC	5 cut(s)	19, 156, 387, 559, 824
HpyAV	CCTTC	3 cut(s)	80, 318, 677
HpyCH4IV	ACGT	1 cut(s)	826
HpyCH4V	TGCA	3 cut(s)	51, 91, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	826
Hsp92II	CATG	1 cut(s)	518
HspAI	GCGC	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	4 cut(s)	39, 123, 606, 635
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	3 cut(s)	538, 666, 793
MaeI	CTAG	3 cut(s)	74, 194, 680
MaeII	ACGT	1 cut(s)	826
MaeIII	GTNAC	4 cut(s)	334, 362, 448, 578
MalI	GATC	4 cut(s)	41, 125, 608, 637
MboI	GATC	4 cut(s)	39, 123, 606, 635
MboII	GAAGA	8 cut(s)	281, 497, 500, 503, 656, 722, 755, 794
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	635
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	3 cut(s)	94, 465, 565
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	586, 658, 682, 721
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	4 cut(s)	32, 98, 656, 732
MslI	CAYNNNNRTG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	297
NdeII	GATC	4 cut(s)	39, 123, 606, 635
NlaIII	CATG	1 cut(s)	518
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	2 cut(s)	334, 362
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	25, 785
PflFI	GACNNNGTC	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PsiI	TTATAA	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	635
PsyI	GACNNNGTC	1 cut(s)	515
RsaI	GTAC	3 cut(s)	200, 628, 672
RsaNI	GTAC	3 cut(s)	199, 627, 671
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	4 cut(s)	32, 98, 656, 732
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	4 cut(s)	39, 123, 606, 635
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	3 cut(s)	538, 666, 793
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	3 cut(s)	94, 465, 565
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	3 cut(s)	74, 194, 680
StyD4I	CCNGG	1 cut(s)	130
TaiI	ACGT	1 cut(s)	829
TaqI	TCGA	1 cut(s)	235
TasI	AATT	3 cut(s)	94, 465, 565
TfiI	GAWTC	2 cut(s)	25, 785
Tru1I	TTAA	4 cut(s)	32, 98, 656, 732
Tru9I	TTAA	4 cut(s)	32, 98, 656, 732
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	334, 362
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	2 cut(s)	334, 362
TspDTI	ATGAA	3 cut(s)	221, 282, 765
TspGWI	ACGGA	1 cut(s)	688
TspRI	CASTG	1 cut(s)	394
Tth111I	GACNNNGTC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	3 cut(s)	74, 194, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.