Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002426

Physical Location & Seq

Genomic Coordinates Forward (+)

26092710 .. 26098735

Gene Structure 6026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG239000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGTAATGTTGTTGAAGATGGAGCTACTATTTGCAGTTCTGGCACTTGCTAGCTTGCATTCTTTCGTATTGCCAGATCCACAAGGAGATGCACTGTATTCATTGAGGACTTCATTGATTACTTCACCCAATCAGCTCAAGGACTGGAATCCCAACCAAGTCAATCCATGCACTTGGTCCAATGTGAATTGCGACACTGACAACAATGTCATTTCTGTAACATTATCAAATATTGGATTTAATGGAACCTTATCCCCTAAAGTAGGAAACCTGAAAACTCTTCAAATACTTGCATTGCAAGGAAATGGCATAACTGGTGAGATACCAAAAGAGTTTGGAGATCTGACAAGTTTGGCCACCTTGAATTTGGAAAATAATAATTTAACTGGTGCAATACCAGCTTCCCTTGGTAATCTGAAAAAGCTTCAATTCTTGACTTTGAGTCAAAACAATTTGAACGGGAGCATCCCAGATTCACTTTCAAATCTTTCAACTTTGATTAATCTTCAGCTCGCCCTCAATGCTCTCAGTGGTCAAATACCTGAGCAGTTATTTCAGATTCAAAAATACAATTTTACAGGAAACAAACTAAACTGTGGTGTAAATCTTCCCCACAGTTGTGCATCCGATACTGATGTGTCTGGATCTTCAAATAAGCCAAAGCTTGGAATTATAGTTGGAGCTGTTGGAGGGTTCATCATTTTACTTTTTGGAGGCTTGGTTTACTTTGTTTGTAAGCGTAGACACAAAGACTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGACCGAAGGATTGCATTCGGTCAGTTGAAAAGATTTTCGTGGAGGGAATTGCAGCTGGCTACAGACAACTTCAATGAGAACAATGTTCTAGGACAGGGGGGTTTTGGTAAAGTCTATAAAGGAGTGTTATCTGATACTACAAAAATTGCTGTTAAACGGCTGACCGATTATGAGAGTCCTGGGGGAGATGCAGCTTTTCAGCGTGAAGTTGAAATGATAAGTGTAGCTGTTCACAGGAACCTATTACGACTGATTGGATTTTGCACAACCCCAACAGAACGCCTTTTGGTCAAGAAGTTGGAAAGGGAAAAGAGACTGGATGCAATAGTAGATGGAAATCTGGATAGTAGTTACAACATCCAAGAGGTAGAAATGATGATCCAAGTTGCACTGCTTTGTACCCAAGGATCCCCTGAAGATCGTCCACTAATGTCGGAGGTGGTACGTATGCTGGAAGGAGAGGGTCTGGCTGAGCGGTGGGAAGAATGGCAGCATGTGGAAGTTACTCGCAGGCAAGAGTACGAGAGACTACTACAAAGGAGATATGATTGGGGAGAAGACTCGGTTTATAACCAGGATGCTATTGAGTTATCTGGTGGACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

465

Amino Acids

51.64

Weight (kDa)

5.61

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	3.3e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	84 - 176	4.7e-11	Leucine-rich repeat region
LRR_8	PF13855	93 - 152	4.1e-10	Leucine rich repeat
Pkinase	PF00069	289 - 375	2e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	291 - 394	1.8e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10290 AT5G10290 AT5G65240 AT5G65240
fragaria_vesca	FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640
malus_domestica	MD01G1032200.v1.1 MD15G1322900.v1.1 MD15G1323000.v1.1
prunus_persica	Prupe.6G189000_v2.0.a1 Prupe.6G189000_v2.0.a1
pyrus_communis	pycom01g05940 pycom15g28350 pycom15g28360 pycom15g28370 pycom15g28410 pycom15g28430
rosa_chinensis	RchiOBHm_Chr2g0113091
rosa_laevigata	RLG00000018037
rosa_multiflora	Rmu_sc0005949.1_g000009 Rmu_sc0018337.1_g000002 Rmu_sc0034368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130900
rosa_rugosa	Rorug02G0183900 Rorug02G0184000 Rorug02G0184100 Rorug02G0184200 Rorug02G0184300 Rorug02G0184400 Rorug02G0184500 Rorug02G0184600
rosa_samantha	Rh2AG239000 Rh2BG252700 Rh2CG243200 Rh2DG247100
rosa_wichuraiana	Rw2G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1362
AarI	CACCTGC	1 cut(s)	773
AasI	GACNNNNNNGTC	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	773
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccBSI	CCGCTC	1 cut(s)	1267
AccI	GTMKAC	1 cut(s)	742
AciI	CCGC	1 cut(s)	1267
AclWI	GGATC	5 cut(s)	71, 652, 1165, 1194, 1207
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	2 cut(s)	491, 1227
AfaI	GTAC	3 cut(s)	1192, 1236, 1313
AfiI	CCNNNNNNNGG	2 cut(s)	263, 665
AhdI	GACNNNNNGTC	1 cut(s)	441
AjnI	CCWGG	2 cut(s)	970, 1365
AleI	CACNNNNGTG	1 cut(s)	618
Alw26I	GTCTC	2 cut(s)	1099, 1312
AlwI	GGATC	5 cut(s)	71, 652, 1165, 1194, 1207
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	3 cut(s)	844, 983, 1282
ApoI	RAATTY	1 cut(s)	364
AseI	ATTAAT	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	3 cut(s)	117, 329, 797
AsuNHI	GCTAGC	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	177
BaeI	ACNNNNGTAYC	2 cut(s)	621, 654
BalI	TGGCCA	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	1199
BbsI	GAAGAC	1 cut(s)	1356
BbvI	GCAGC	3 cut(s)	856, 995, 1294
BccI	CCATC	2 cut(s)	13, 1118
BceAI	ACGGC	1 cut(s)	965
BciT130I	CCWGG	2 cut(s)	972, 1367
BcoDI	GTCTC	2 cut(s)	1099, 1312
BfaI	CTAG	2 cut(s)	51, 881
BfmI	CTRYAG	1 cut(s)	852
BfuAI	ACCTGC	1 cut(s)	773
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	845, 984, 1283
BlpI	GCTNAGC	1 cut(s)	1263
BlsI	GCNGC	3 cut(s)	846, 985, 1284
Bme1390I	CCNGG	2 cut(s)	972, 1367
Bme18I	GGWCC	1 cut(s)	177
BmeRI	GACNNNNNGTC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	3 cut(s)	247, 1031, 1201
BmrFI	CCNGG	2 cut(s)	972, 1367
BmsI	GCATC	6 cut(s)	79, 474, 632, 970, 1102, 1360
BmtI	GCTAGC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	1356
Bpu10I	CCTNAGC	1 cut(s)	543
Bpu1102I	GCTNAGC	1 cut(s)	1263
BpuEI	CTTGAG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	1238
BsaBI	GATNNNNATC	1 cut(s)	1128
BsaJI	CCNNGG	3 cut(s)	406, 971, 1195
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 665
Bse1I	ACTGG	4 cut(s)	149, 319, 391, 1113
Bse3DI	GCAATG	1 cut(s)	293
Bse8I	GATNNNNATC	1 cut(s)	1128
BseBI	CCWGG	2 cut(s)	972, 1367
BseDI	CCNNGG	3 cut(s)	406, 971, 1195
BseGI	GGATG	5 cut(s)	465, 623, 1117, 1149, 1375
BseJI	GATNNNNATC	1 cut(s)	1128
BseLI	CCNNNNNNNGG	2 cut(s)	263, 665
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	3 cut(s)	534, 541, 1254
BseNI	ACTGG	4 cut(s)	149, 319, 391, 1113
BseXI	GCAGC	3 cut(s)	856, 995, 1294
BshFI	GGCC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	263, 665
BsmAI	GTCTC	2 cut(s)	1099, 1312
BsmI	GAATGC	2 cut(s)	58, 806
BsnI	GGCC	1 cut(s)	356
Bsp143I	GATC	6 cut(s)	76, 340, 644, 1170, 1199, 1210
Bsp1720I	GCTNAGC	1 cut(s)	1263
BspACI	CCGC	1 cut(s)	1267
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	3 cut(s)	535, 540, 1255
BspLI	GGNNCC	3 cut(s)	247, 1031, 1201
BspMI	ACCTGC	1 cut(s)	773
BspOI	GCTAGC	1 cut(s)	54
BspPI	GGATC	5 cut(s)	71, 652, 1165, 1194, 1207
BsrBI	CCGCTC	1 cut(s)	1267
BsrDI	GCAATG	1 cut(s)	293
BsrI	ACTGG	4 cut(s)	149, 319, 391, 1113
BssECI	CCNNGG	3 cut(s)	406, 971, 1195
BssMI	GATC	6 cut(s)	76, 340, 644, 1170, 1199, 1210
BssT1I	CCWWGG	2 cut(s)	406, 1195
Bst2UI	CCWGG	2 cut(s)	972, 1367
Bst4CI	ACNGT	3 cut(s)	96, 596, 617
Bst6I	CTCTTC	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	1238
BstC8I	GCNNGC	5 cut(s)	52, 56, 513, 849, 1304
BstDEI	CTNAG	3 cut(s)	527, 543, 1263
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstF5I	GGATG	5 cut(s)	465, 623, 1117, 1149, 1375
BstKTI	GATC	6 cut(s)	79, 343, 647, 1173, 1202, 1213
BstMAI	GTCTC	2 cut(s)	1099, 1312
BstMBI	GATC	6 cut(s)	76, 340, 644, 1170, 1199, 1210
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 398, 521
BstNI	CCWGG	2 cut(s)	972, 1367
BstNSI	RCATGY	1 cut(s)	1289
BstSCI	CCNGG	2 cut(s)	970, 1365
BstSFI	CTRYAG	1 cut(s)	852
BstSNI	TACGTA	1 cut(s)	1238
BstV1I	GCAGC	3 cut(s)	856, 995, 1294
BstV2I	GAAGAC	1 cut(s)	1356
BstX2I	RGATCY	4 cut(s)	76, 340, 644, 1199
BstXI	CCANNNNNNTGG	1 cut(s)	174
BstYI	RGATCY	4 cut(s)	76, 340, 644, 1199
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	5 cut(s)	465, 623, 1117, 1149, 1375
BtsI	GCAGTG	1 cut(s)	1181
BtsIMutI	CAGTG	4 cut(s)	92, 195, 535, 1181
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	5 cut(s)	52, 56, 513, 849, 1304
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	1191, 1235, 1312
CviAII	CATG	2 cut(s)	168, 1286
CviQI	GTAC	3 cut(s)	1191, 1235, 1312
DdeI	CTNAG	3 cut(s)	527, 543, 1263
DpnI	GATC	6 cut(s)	78, 342, 646, 1172, 1201, 1212
DpnII	GATC	6 cut(s)	76, 340, 644, 1170, 1199, 1210
DrdI	GACNNNNNNGTC	1 cut(s)	206
DriI	GACNNNNNGTC	1 cut(s)	441
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	285
Eco105I	TACGTA	1 cut(s)	1238
Eco130I	CCWWGG	2 cut(s)	406, 1195
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	491, 1227
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	970, 1365
EcoT14I	CCWWGG	2 cut(s)	406, 1195
ErhI	CCWWGG	2 cut(s)	406, 1195
FaeI	CATG	2 cut(s)	171, 1289
FaiI	YATR	9 cut(s)	169, 311, 674, 909, 963, 1241, 1287, 1338, 1362
FatI	CATG	2 cut(s)	167, 1285
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	845, 984, 1283
FokI	GGATG	5 cut(s)	452, 610, 1124, 1136, 1382
Fsp4HI	GCNGC	3 cut(s)	845, 984, 1283
FspBI	CTAG	2 cut(s)	51, 881
GluI	GCNGC	3 cut(s)	845, 984, 1283
HaeIII	GGCC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	171, 1289
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HindIII	AAGCTT	2 cut(s)	422, 662
HinfI	GANTC	6 cut(s)	148, 442, 473, 559, 967, 1352
HphI	GGTGA	3 cut(s)	117, 329, 797
Hpy166II	GTNNAC	6 cut(s)	724, 743, 793, 1024, 1217, 1391
Hpy188I	TCNGA	6 cut(s)	345, 417, 558, 628, 925, 1228
Hpy188III	TCNNGA	4 cut(s)	433, 642, 1084, 1133
Hpy8I	GTNNAC	6 cut(s)	724, 743, 793, 1024, 1217, 1391
HpyAV	CCTTC	2 cut(s)	792, 1241
HpyCH4III	ACNGT	3 cut(s)	96, 596, 617
HpyCH4IV	ACGT	1 cut(s)	1237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 398, 521
HpyF3I	CTNAG	3 cut(s)	527, 543, 1263
HpySE526I	ACGT	1 cut(s)	1237
Hsp92II	CATG	2 cut(s)	171, 1289
Kzo9I	GATC	6 cut(s)	76, 340, 644, 1170, 1199, 1210
LmnI	GCTCC	3 cut(s)	22, 462, 680
Lsp1109I	GCAGC	3 cut(s)	856, 995, 1294
LweI	GCATC	6 cut(s)	79, 474, 632, 970, 1102, 1360
MaeI	CTAG	2 cut(s)	51, 881
MaeII	ACGT	1 cut(s)	1237
MaeIII	GTNAC	3 cut(s)	217, 1142, 1294
MalI	GATC	6 cut(s)	78, 342, 646, 1172, 1201, 1212
MbiI	CCGCTC	1 cut(s)	1267
MboI	GATC	6 cut(s)	76, 340, 644, 1170, 1199, 1210
MboII	GAAGA	8 cut(s)	28, 272, 497, 599, 639, 1220, 1286, 1361
MflI	RGATCY	4 cut(s)	76, 340, 644, 1199
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	9 cut(s)	187, 364, 379, 428, 451, 571, 669, 839, 936
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	3 cut(s)	451, 976, 1346
MmeI	TCCRAC	4 cut(s)	658, 667, 1071, 1206
MnlI	CCTC	8 cut(s)	99, 527, 683, 707, 828, 1150, 1222, 1246
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	4 cut(s)	240, 383, 501, 945
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	847
MspR9I	CCNGG	2 cut(s)	972, 1367
Mva1269I	GAATGC	2 cut(s)	58, 806
MvaI	CCWGG	2 cut(s)	972, 1367
MwoI	GCNNNNNNNGC	3 cut(s)	41, 398, 521
NdeII	GATC	6 cut(s)	76, 340, 644, 1170, 1199, 1210
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	171, 1289
NlaIV	GGNNCC	3 cut(s)	247, 1031, 1201
NspI	RCATGY	1 cut(s)	1289
OliI	CACNNNNGTG	1 cut(s)	618
PaqCI	CACCTGC	1 cut(s)	773
PctI	GAATGC	2 cut(s)	58, 806
PfeI	GAWTC	3 cut(s)	148, 473, 559
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	3 cut(s)	846, 985, 1284
PleI	GAGTC	3 cut(s)	450, 975, 1346
PpsI	GAGTC	3 cut(s)	450, 975, 1346
Ppu21I	YACGTR	1 cut(s)	1238
PshBI	ATTAAT	1 cut(s)	501
PsiI	TTATAA	1 cut(s)	1362
Psp6I	CCWGG	2 cut(s)	970, 1365
PspGI	CCWGG	2 cut(s)	970, 1365
PspN4I	GGNNCC	3 cut(s)	247, 1031, 1201
PspPI	GGNCC	1 cut(s)	177
PsuI	RGATCY	4 cut(s)	76, 340, 644, 1199
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	3 cut(s)	1192, 1236, 1313
RsaNI	GTAC	3 cut(s)	1191, 1235, 1312
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	4 cut(s)	240, 383, 501, 945
SatI	GCNGC	3 cut(s)	845, 984, 1283
Sau3AI	GATC	6 cut(s)	76, 340, 644, 1170, 1199, 1210
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	3 cut(s)	451, 976, 1346
ScrFI	CCNGG	2 cut(s)	972, 1367
SfaNI	GCATC	6 cut(s)	79, 474, 632, 970, 1102, 1360
SfcI	CTRYAG	1 cut(s)	852
SinI	GGWCC	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SnaBI	TACGTA	1 cut(s)	1238
Sse9I	AATT	9 cut(s)	187, 364, 379, 428, 451, 571, 669, 839, 936
SsiI	CCGC	1 cut(s)	1267
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	2 cut(s)	51, 881
StyD4I	CCNGG	2 cut(s)	970, 1365
StyI	CCWWGG	2 cut(s)	406, 1195
TaaI	ACNGT	3 cut(s)	96, 596, 617
TaiI	ACGT	1 cut(s)	1240
TaqII	GACCGA	3 cut(s)	800, 810, 971
TasI	AATT	9 cut(s)	187, 364, 379, 428, 451, 571, 669, 839, 936
TfiI	GAWTC	3 cut(s)	148, 473, 559
Tru1I	TTAA	4 cut(s)	240, 383, 501, 945
Tru9I	TTAA	4 cut(s)	240, 383, 501, 945
TscAI	CASTG	4 cut(s)	99, 202, 535, 1188
TseI	GCWGC	3 cut(s)	844, 983, 1282
TspDTI	ATGAA	3 cut(s)	90, 102, 685
TspRI	CASTG	4 cut(s)	99, 202, 535, 1188
Van91I	CCANNNNNTGG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	177
VspI	ATTAAT	1 cut(s)	501
XagI	CCTNNNNNAGG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	1 cut(s)	1289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	742
XspI	CTAG	2 cut(s)	51, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.