Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002426

Physical Location & Seq

Genomic Coordinates Reverse (-)

17150742 .. 17152633

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0184400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATCAACGCTTGGGCCATACATAGAGATCCTAAGTTGTGGGATGATCCAGAAAGCTTCAAGCCTGAAAGGTTTGCAAAAGGTGGAGAAGAGCCGTACAAGCTCATGCCATTTGGACAAGGAAGAAGGGCTTGCCCTGGTATAGGTATGGCCCAACGTGTGGTTGGCTTAACTTTGGGATCATTGATTCAATGTTTCGAGTGGGAAAGAATCAGTGAGATGAAGGTCATGCTTTTGGCGGGTACTGATTCACCATCCTTGACACTGGAATGGGCCATGTTCAATCTGCTCAACCATCCTGAGGTGCTAAAAAGGACTAGAGCTGAACTGGATGCTGAATTTGGACAAGAACGCTTACTAGACGAACCAGATATCTTCAAACTACCTTGCCTACAAAGTATCATCTCCGAGACTCTCCGATTGTACCCTACAGCGCCACTACTAGTACCACATTATACATCTGATGACTGCACCATTGGAGGATTTGACGTGCCATGTGACACGATAGTAATGATCAGTGCGTGGGCCATACACAGAGATCCAACGTTGTGGGATAGCTTCAAGCCTGAGAGGTTTGCAAATGGCGGAGAAGAGCCATACAAGCTCATGCCATTTGGACAAGGAAGAAGGGCTTGGCCTGGCTTTGGGATCATTGATTCAATGTTTCGATTGGCAAAAAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

228

Amino Acids

25.9

Weight (kDa)

5.32

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 72	8.8e-23	Cytochrome P450
p450	PF00067	74 - 214	5.9e-43	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10290 AT5G10290 AT5G65240 AT5G65240
fragaria_vesca	FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640
malus_domestica	MD01G1032200.v1.1 MD15G1322900.v1.1 MD15G1323000.v1.1
prunus_persica	Prupe.6G189000_v2.0.a1 Prupe.6G189000_v2.0.a1
pyrus_communis	pycom01g05940 pycom15g28350 pycom15g28360 pycom15g28370 pycom15g28410 pycom15g28430
rosa_chinensis	RchiOBHm_Chr2g0113091
rosa_laevigata	RLG00000018037
rosa_multiflora	Rmu_sc0005949.1_g000009 Rmu_sc0018337.1_g000002 Rmu_sc0034368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130900
rosa_rugosa	Rorug02G0183900 Rorug02G0184000 Rorug02G0184100 Rorug02G0184200 Rorug02G0184300 Rorug02G0184400 Rorug02G0184500 Rorug02G0184600
rosa_samantha	Rh2AG239000 Rh2BG252700 Rh2CG243200 Rh2DG247100
rosa_wichuraiana	Rw2G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AciI	CCGC	2 cut(s)	239, 585
AclI	AACGTT	1 cut(s)	545
AclWI	GGATC	5 cut(s)	23, 41, 187, 533, 656
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	4 cut(s)	98, 244, 425, 447
AfiI	CCNNNNNNNGG	4 cut(s)	143, 160, 301, 644
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	6 cut(s)	61, 191, 283, 379, 562, 660
AhlI	ACTAGT	1 cut(s)	442
AjiI	CACGTC	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	136, 637
AjuI	GAANNNNNNNTTGG	2 cut(s)	616, 648
AluBI	AGCT	5 cut(s)	57, 103, 323, 558, 604
AluI	AGCT	5 cut(s)	57, 103, 323, 558, 604
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	5 cut(s)	23, 41, 187, 533, 656
AoxI	GGCC	5 cut(s)	15, 150, 273, 525, 635
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	4 cut(s)	15, 151, 273, 525
AsuHPI	GGTGA	1 cut(s)	243
AxyI	CCTNAGG	1 cut(s)	300
BccI	CCATC	2 cut(s)	262, 303
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	2 cut(s)	138, 639
BclI	TGATCA	2 cut(s)	3, 513
BcoDI	GTCTC	1 cut(s)	404
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	3 cut(s)	318, 359, 443
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	437
Bme1390I	CCNGG	2 cut(s)	138, 639
BmgBI	CACGTC	1 cut(s)	490
BmgT120I	GGNCC	4 cut(s)	15, 151, 273, 525
BmrFI	CCNGG	2 cut(s)	138, 639
BmsI	GCATC	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 160, 301, 644
Bse1I	ACTGG	2 cut(s)	270, 333
Bse21I	CCTNAGG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	138, 639
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	4 cut(s)	49, 254, 295, 337
BseLI	CCNNNNNNNGG	4 cut(s)	143, 160, 301, 644
BseMII	CTCAG	2 cut(s)	291, 558
BseNI	ACTGG	2 cut(s)	270, 333
BsgI	GTGCAG	1 cut(s)	454
BshFI	GGCC	5 cut(s)	17, 152, 275, 527, 637
BslI	CCNNNNNNNGG	4 cut(s)	143, 160, 301, 644
BsmAI	GTCTC	1 cut(s)	404
BsnI	GGCC	5 cut(s)	17, 152, 275, 527, 637
Bsp143I	GATC	7 cut(s)	3, 28, 46, 179, 513, 538, 648
BspACI	CCGC	2 cut(s)	239, 585
BspANI	GGCC	5 cut(s)	17, 152, 275, 527, 637
BspCNI	CTCAG	2 cut(s)	292, 559
BspPI	GGATC	5 cut(s)	23, 41, 187, 533, 656
BspQI	GCTCTTC	2 cut(s)	84, 585
BsrI	ACTGG	2 cut(s)	270, 333
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	7 cut(s)	3, 28, 46, 179, 513, 538, 648
Bst2UI	CCWGG	2 cut(s)	138, 639
Bst6I	CTCTTC	2 cut(s)	84, 585
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	3 cut(s)	33, 300, 567
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	4 cut(s)	49, 254, 295, 337
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	7 cut(s)	6, 31, 49, 182, 516, 541, 651
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	7 cut(s)	3, 28, 46, 179, 513, 538, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 601
BstNI	CCWGG	2 cut(s)	138, 639
BstSCI	CCNGG	2 cut(s)	136, 637
BstSFI	CTRYAG	1 cut(s)	429
BstX2I	RGATCY	2 cut(s)	28, 538
BstXI	CCANNNNNNTGG	1 cut(s)	549
BstYI	RGATCY	2 cut(s)	28, 538
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	5 cut(s)	17, 152, 275, 527, 637
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	4 cut(s)	49, 254, 295, 337
BtsIMutI	CAGTG	3 cut(s)	220, 263, 523
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	4 cut(s)	15, 151, 273, 525
Csp6I	GTAC	4 cut(s)	97, 243, 424, 446
CviAII	CATG	5 cut(s)	106, 229, 277, 495, 607
CviQI	GTAC	4 cut(s)	97, 243, 424, 446
DdeI	CTNAG	3 cut(s)	33, 300, 567
DpnI	GATC	7 cut(s)	5, 30, 48, 181, 515, 540, 650
DpnII	GATC	7 cut(s)	3, 28, 46, 179, 513, 538, 648
Eam1104I	CTCTTC	2 cut(s)	84, 585
EarI	CTCTTC	2 cut(s)	84, 585
EciI	GGCGGA	1 cut(s)	600
Eco32I	GATATC	1 cut(s)	373
Eco81I	CCTNAGG	1 cut(s)	300
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	136, 637
EcoRV	GATATC	1 cut(s)	373
FaeI	CATG	5 cut(s)	109, 232, 280, 498, 610
FalI	AAGNNNNNCTT	4 cut(s)	115, 147, 616, 648
FatI	CATG	5 cut(s)	105, 228, 276, 494, 606
FauI	CCCGC	1 cut(s)	232
FbaI	TGATCA	2 cut(s)	3, 513
FokI	GGATG	4 cut(s)	56, 241, 282, 344
FspBI	CTAG	3 cut(s)	318, 359, 443
GlaI	GCGC	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	5 cut(s)	17, 152, 275, 527, 637
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	109, 232, 280, 498, 610
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	5 cut(s)	187, 210, 248, 412, 656
HphI	GGTGA	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	409, 419, 463
Hpy188III	TCNNGA	2 cut(s)	50, 299
HpyAV	CCTTC	3 cut(s)	120, 217, 621
HpyCH4IV	ACGT	3 cut(s)	157, 489, 545
HpyCH4V	TGCA	3 cut(s)	77, 471, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 601
HpyF3I	CTNAG	3 cut(s)	33, 300, 567
HpySE526I	ACGT	3 cut(s)	157, 489, 545
Hsp92II	CATG	5 cut(s)	109, 232, 280, 498, 610
HspAI	GCGC	1 cut(s)	434
Ksp22I	TGATCA	2 cut(s)	3, 513
Kzo9I	GATC	7 cut(s)	3, 28, 46, 179, 513, 538, 648
LguI	GCTCTTC	2 cut(s)	84, 585
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	3 cut(s)	318, 359, 443
MaeII	ACGT	3 cut(s)	157, 489, 545
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	7 cut(s)	5, 30, 48, 181, 515, 540, 650
MboI	GATC	7 cut(s)	3, 28, 46, 179, 513, 538, 648
MboII	GAAGA	5 cut(s)	101, 135, 367, 602, 636
MflI	RGATCY	2 cut(s)	28, 538
MluCI	AATT	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	3 cut(s)	295, 473, 564
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	268
MspR9I	CCNGG	2 cut(s)	138, 639
MvaI	CCWGG	2 cut(s)	138, 639
MwoI	GCNNNNNNNGC	2 cut(s)	100, 601
NdeII	GATC	7 cut(s)	3, 28, 46, 179, 513, 538, 648
NlaIII	CATG	5 cut(s)	109, 232, 280, 498, 610
NmuCI	GTSAC	1 cut(s)	497
PciSI	GCTCTTC	2 cut(s)	84, 585
PfeI	GAWTC	4 cut(s)	187, 210, 248, 656
PflMI	CCANNNNNTGG	1 cut(s)	160
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp1406I	AACGTT	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	136, 637
PspGI	CCWGG	2 cut(s)	136, 637
PspPI	GGNCC	4 cut(s)	15, 151, 273, 525
PsuI	RGATCY	2 cut(s)	28, 538
RsaI	GTAC	4 cut(s)	98, 244, 425, 447
RsaNI	GTAC	4 cut(s)	97, 243, 424, 446
RseI	CAYNNNNRTG	1 cut(s)	268
SapI	GCTCTTC	2 cut(s)	84, 585
SaqAI	TTAA	1 cut(s)	170
Sau3AI	GATC	7 cut(s)	3, 28, 46, 179, 513, 538, 648
Sau96I	GGNCC	4 cut(s)	15, 151, 273, 525
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	138, 639
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	268
SpeI	ACTAGT	1 cut(s)	442
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	2 cut(s)	239, 585
SspMI	CTAG	3 cut(s)	318, 359, 443
StyD4I	CCNGG	2 cut(s)	136, 637
TaiI	ACGT	3 cut(s)	160, 492, 548
TaqI	TCGA	2 cut(s)	198, 667
TasI	AATT	1 cut(s)	338
TfiI	GAWTC	4 cut(s)	187, 210, 248, 656
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	3 cut(s)	220, 270, 523
TseFI	GTSAC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	3 cut(s)	220, 270, 523
Van91I	CCANNNNNTGG	1 cut(s)	160
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XspI	CTAG	3 cut(s)	318, 359, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.