Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002426

Physical Location & Seq

Genomic Coordinates Reverse (-)

17152805 .. 17155939

Gene Structure 3135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0184500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGCTACAACTACACCACTGTGGTGGAGTCCCCATATGGGAAACACTGGCGCAACCTACGCCGTATTGGCGCTACCGATATCTACTCTCCCACTAGGCTCAACATGTTGTCGAGCATCAGGAAGGACGAAGTCAAGCAATTACTGTTCAGACTCTCACACAACTCACGTGAAGATTTTGCAAAGGTGGACTTGAGATCCATGCTCTCTGAGCTGACATTTAACATCATAATGACAATGGTGGCAGGGAAGAGGTATTATGGAGATGGCATGTCAGACAAAGAAGAGGCCAAACAATTCAGAGATCTCATGAGCGAGGGTTTGTCGTATGGTGGCGCAACAAACCCCTCAGACTTTGTGCCTATATTGAAATGGTTTAGAGGTGGTGGGGCTGAGAAGAAGGTGATGGACTTGGGTAAGAGGATGGATGCATTCTTGCAAGGTTTGATCGATGAGCAGAATCTGAGTAAAACTACTTCAGATCGGAGTACAGCAAATACTTTGATCCACCATTTACTTTCTCTTCAAGAATCACAGCCTGAGTATTACACTAACCAAATTATCAAAGGGCTTATACTGGTCATGCTTTTGGGGGGTACTGATTCTTCATCCCTGACAATGGAATGGGCCATGTCCAATCTGCTCAACCATCCTGAGGTGTTAAAAAGGGCTAGAGCTGAACTGGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

230

Amino Acids

26.11

Weight (kDa)

7.89

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	10 - 229	1.8e-23	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10290 AT5G10290 AT5G65240 AT5G65240
fragaria_vesca	FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640
malus_domestica	MD01G1032200.v1.1 MD15G1322900.v1.1 MD15G1323000.v1.1
prunus_persica	Prupe.6G189000_v2.0.a1 Prupe.6G189000_v2.0.a1
pyrus_communis	pycom01g05940 pycom15g28350 pycom15g28360 pycom15g28370 pycom15g28410 pycom15g28430
rosa_chinensis	RchiOBHm_Chr2g0113091
rosa_laevigata	RLG00000018037
rosa_multiflora	Rmu_sc0005949.1_g000009 Rmu_sc0018337.1_g000002 Rmu_sc0034368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130900
rosa_rugosa	Rorug02G0183900 Rorug02G0184000 Rorug02G0184100 Rorug02G0184200 Rorug02G0184300 Rorug02G0184400 Rorug02G0184500 Rorug02G0184600
rosa_samantha	Rh2AG239000 Rh2BG252700 Rh2CG243200 Rh2DG247100
rosa_wichuraiana	Rw2G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	192, 499
AcuI	CTGAAG	1 cut(s)	462
AcvI	CACGTG	1 cut(s)	170
AfaI	GTAC	2 cut(s)	490, 598
AfiI	CCNNNNNNNGG	3 cut(s)	39, 619, 655
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	370, 527
AleI	CACNNNNGTG	2 cut(s)	20, 23
AluBI	AGCT	2 cut(s)	214, 677
AluI	AGCT	2 cut(s)	214, 677
AlwI	GGATC	2 cut(s)	192, 499
AlwNI	CAGNNNCTG	1 cut(s)	463
AoxI	GGCC	2 cut(s)	288, 627
AspLEI	GCGC	3 cut(s)	54, 74, 338
AspS9I	GGNCC	1 cut(s)	627
AsuHPI	GGTGA	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	654
BarI	GAAGNNNNNNTAC	4 cut(s)	460, 492, 589, 621
BbrPI	CACGTG	1 cut(s)	170
BccI	CCATC	4 cut(s)	260, 400, 418, 657
BceAI	ACGGC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	96, 672
BfoI	RGCGCY	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	69
BglII	AGATCT	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	627
BmsI	GCATC	3 cut(s)	126, 418, 676
BpuEI	CTTGAG	1 cut(s)	214
Bsa29I	ATCGAT	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 619, 655
Bse1I	ACTGG	3 cut(s)	53, 582, 687
Bse21I	CCTNAGG	1 cut(s)	654
BseCI	ATCGAT	1 cut(s)	450
BseGI	GGATG	5 cut(s)	429, 433, 608, 649, 691
BseLI	CCNNNNNNNGG	3 cut(s)	39, 619, 655
BseMII	CTCAG	6 cut(s)	201, 363, 384, 455, 531, 645
BseNI	ACTGG	3 cut(s)	53, 582, 687
BshFI	GGCC	2 cut(s)	290, 629
BshVI	ATCGAT	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	3 cut(s)	39, 619, 655
BsmFI	GGGAC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	290, 629
Bsp143I	GATC	5 cut(s)	197, 304, 447, 481, 504
BspANI	GGCC	2 cut(s)	290, 629
BspCNI	CTCAG	6 cut(s)	202, 362, 385, 456, 532, 646
BspDI	ATCGAT	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	309
BspPI	GGATC	2 cut(s)	192, 499
BsrI	ACTGG	3 cut(s)	53, 582, 687
BssMI	GATC	5 cut(s)	197, 304, 447, 481, 504
Bst4CI	ACNGT	2 cut(s)	22, 147
Bst6I	CTCTTC	3 cut(s)	245, 279, 528
BstBAI	YACGTR	1 cut(s)	170
BstDEI	CTNAG	6 cut(s)	210, 349, 393, 464, 540, 654
BstF5I	GGATG	5 cut(s)	429, 433, 608, 649, 691
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	3 cut(s)	54, 74, 338
BstKTI	GATC	5 cut(s)	200, 307, 450, 484, 507
BstMBI	GATC	5 cut(s)	197, 304, 447, 481, 504
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 69, 211
BstNSI	RCATGY	2 cut(s)	109, 274
BstX2I	RGATCY	2 cut(s)	197, 304
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	2 cut(s)	197, 304
Bsu15I	ATCGAT	1 cut(s)	450
Bsu36I	CCTNAGG	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	290, 629
BsuTUI	ATCGAT	1 cut(s)	450
BtsCI	GGATG	5 cut(s)	429, 433, 608, 649, 691
BtsIMutI	CAGTG	2 cut(s)	18, 46
CaiI	CAGNNNCTG	1 cut(s)	463
CciI	TCATGA	1 cut(s)	309
CfoI	GCGC	3 cut(s)	54, 74, 338
Cfr13I	GGNCC	1 cut(s)	627
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	489, 597
CviAII	CATG	6 cut(s)	106, 202, 271, 310, 583, 631
CviQI	GTAC	2 cut(s)	489, 597
DdeI	CTNAG	6 cut(s)	210, 349, 393, 464, 540, 654
DpnI	GATC	5 cut(s)	199, 306, 449, 483, 506
DpnII	GATC	5 cut(s)	197, 304, 447, 481, 504
Eam1104I	CTCTTC	3 cut(s)	245, 279, 528
EarI	CTCTTC	3 cut(s)	245, 279, 528
Eco32I	GATATC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	462
Eco72I	CACGTG	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	654
EcoRV	GATATC	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	433
FaeI	CATG	6 cut(s)	109, 205, 274, 313, 586, 634
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	6 cut(s)	105, 201, 270, 309, 582, 630
FauNDI	CATATG	1 cut(s)	37
FokI	GGATG	4 cut(s)	436, 440, 595, 636
FspBI	CTAG	2 cut(s)	96, 672
GlaI	GCGC	3 cut(s)	53, 73, 337
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	290, 629
HhaI	GCGC	3 cut(s)	54, 74, 338
Hin1II	CATG	6 cut(s)	109, 205, 274, 313, 586, 634
Hin6I	GCGC	3 cut(s)	52, 72, 336
HinP1I	GCGC	3 cut(s)	52, 72, 336
HinfI	GANTC	5 cut(s)	29, 153, 460, 530, 602
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	8 cut(s)	152, 211, 277, 302, 352, 465, 481, 486
Hpy188III	TCNNGA	4 cut(s)	121, 310, 527, 653
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	118, 394
HpyCH4III	ACNGT	2 cut(s)	22, 147
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	3 cut(s)	182, 431, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 69, 211
HpyF3I	CTNAG	6 cut(s)	210, 349, 393, 464, 540, 654
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	6 cut(s)	109, 205, 274, 313, 586, 634
HspAI	GCGC	3 cut(s)	52, 72, 336
Kzo9I	GATC	5 cut(s)	197, 304, 447, 481, 504
LpnPI	CCDG	8 cut(s)	34, 106, 231, 552, 563, 626, 666, 668
LweI	GCATC	3 cut(s)	126, 418, 676
MaeI	CTAG	2 cut(s)	96, 672
MaeII	ACGT	1 cut(s)	169
MalI	GATC	5 cut(s)	199, 306, 449, 483, 506
MboI	GATC	5 cut(s)	197, 304, 447, 481, 504
MboII	GAAGA	6 cut(s)	185, 262, 296, 409, 515, 597
MflI	RGATCY	2 cut(s)	197, 304
MluCI	AATT	3 cut(s)	140, 296, 558
MlyI	GAGTC	2 cut(s)	38, 147
MnlI	CCTC	7 cut(s)	246, 280, 310, 358, 374, 414, 649
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	3 cut(s)	222, 662, 691
MslI	CAYNNNNRTG	3 cut(s)	20, 23, 230
Mva1269I	GAATGC	1 cut(s)	431
MwoI	GCNNNNNNNGC	3 cut(s)	60, 69, 211
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	5 cut(s)	197, 304, 447, 481, 504
NlaIII	CATG	6 cut(s)	109, 205, 274, 313, 586, 634
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	2 cut(s)	109, 274
OliI	CACNNNNGTG	2 cut(s)	20, 23
PagI	TCATGA	1 cut(s)	309
PciI	ACATGT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	431
PfeI	GAWTC	3 cut(s)	460, 530, 602
PflFI	GACNNNGTC	1 cut(s)	131
PleI	GAGTC	2 cut(s)	37, 147
PmaCI	CACGTG	1 cut(s)	170
PmlI	CACGTG	1 cut(s)	170
PpsI	GAGTC	2 cut(s)	37, 147
Ppu21I	YACGTR	1 cut(s)	170
PscI	ACATGT	1 cut(s)	105
PspCI	CACGTG	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	627
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	197, 304
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	2 cut(s)	490, 598
RsaNI	GTAC	2 cut(s)	489, 597
RseI	CAYNNNNRTG	3 cut(s)	20, 23, 230
SaqAI	TTAA	3 cut(s)	222, 662, 691
Sau3AI	GATC	5 cut(s)	197, 304, 447, 481, 504
Sau96I	GGNCC	1 cut(s)	627
SchI	GAGTC	2 cut(s)	38, 147
SfaNI	GCATC	3 cut(s)	126, 418, 676
SmiMI	CAYNNNNRTG	3 cut(s)	20, 23, 230
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	3 cut(s)	140, 296, 558
SspMI	CTAG	2 cut(s)	96, 672
TaaI	ACNGT	2 cut(s)	22, 147
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	113, 450
TasI	AATT	3 cut(s)	140, 296, 558
TatI	WGTACW	1 cut(s)	488
TfiI	GAWTC	3 cut(s)	460, 530, 602
Tru1I	TTAA	3 cut(s)	222, 662, 691
Tru9I	TTAA	3 cut(s)	222, 662, 691
TscAI	CASTG	2 cut(s)	25, 53
TspDTI	ATGAA	1 cut(s)	597
TspRI	CASTG	2 cut(s)	25, 53
Tth111I	GACNNNGTC	1 cut(s)	131
XceI	RCATGY	2 cut(s)	109, 274
XspI	CTAG	2 cut(s)	96, 672
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.