Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002426

Physical Location & Seq

Genomic Coordinates Reverse (-)

67392903 .. 67401573

Gene Structure 8671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGTAATGTTGTTGAAGATGGAGCTACTATTTGCAGTTCTGGCACTTGCTAGCTTGCATTCTTTTGTATTGCCAGATTCACAAGGAGATGCACTGTATTCATTGAGGACTTCATTGATTACTTCACCCAATCAGCTCAAGGACTGGAATCCCAACCAAGTCAATCCATGCACTTGGTCCAATGTGAATTGCGACACTAACAACAATGTCATTTCTGTAACATTGTCAAATATTGGATTTAATGGAACCTTATCCCCTAAAGTAGGAAACCTGAAAACTCTTCAAACACTTGCATTGCAAGGAAATGGCATAACTGGTGGGATACCAAAAGAGTTTGGAGATCTGACAAGTTTGGCCACCTTGAATTTGGAAAATAATAATTTAACTGGTGAAATACCATCTTCCCTTGGTAATCTGCAAAAGCTTCAATTCTTGACTTTGAATCAAAACAATTTGAGCGGGAGCATCCCAGATTCACTTTCAAATCTTTCAACTTTGATGAATCTTCAGCTTGCCTTCAATGCTCTCAGTGGCCAAATACCTGAGCAGTTATTTCAGATTCAAAAATACAATTTTACAGGAAACAAACTAAACTGTGGCGTAAATCTTCCCCACCGTTGTGCATCCGATACTGATGTGTCTGGATCTTCAAATAAGCCAAAGCTTGGAATTATAGTTGGAGTTGTTGGAGGGTTCATCATTTTACTTTTTGGAGGCTTGGTTTACCTTGTTTGTAAGCGTAGACACAAAGGCTACAGGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGACCGAAGGATTGCATTCGGTCAGTTGAAAAGATTTTCGTGGAGGGAATTGCAGCTGGCTACAGACAACTTCAATGAGAAAAATGTTCTAGGACAGGGGGTTTTGGTAAAGTCTATAAAGGAGTGTTATCTGATACTACAAAAATTGCTGTTAAACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

317

Amino Acids

34.65

Weight (kDa)

9.0

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	1.7e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	83 - 184	4.2e-12	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10290 AT5G10290 AT5G65240 AT5G65240
fragaria_vesca	FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640
malus_domestica	MD01G1032200.v1.1 MD15G1322900.v1.1 MD15G1323000.v1.1
prunus_persica	Prupe.6G189000_v2.0.a1 Prupe.6G189000_v2.0.a1
pyrus_communis	pycom01g05940 pycom15g28350 pycom15g28360 pycom15g28370 pycom15g28410 pycom15g28430
rosa_chinensis	RchiOBHm_Chr2g0113091
rosa_laevigata	RLG00000018037
rosa_multiflora	Rmu_sc0005949.1_g000009 Rmu_sc0018337.1_g000002 Rmu_sc0034368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130900
rosa_rugosa	Rorug02G0183900 Rorug02G0184000 Rorug02G0184100 Rorug02G0184200 Rorug02G0184300 Rorug02G0184400 Rorug02G0184500 Rorug02G0184600
rosa_samantha	Rh2AG239000 Rh2BG252700 Rh2CG243200 Rh2DG247100
rosa_wichuraiana	Rw2G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	773
Acc36I	ACCTGC	1 cut(s)	773
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccBSI	CCGCTC	1 cut(s)	459
AccI	GTMKAC	1 cut(s)	742
AciI	CCGC	1 cut(s)	459
AclWI	GGATC	1 cut(s)	652
AcoI	YGGCCR	2 cut(s)	354, 532
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	263, 665
AleI	CACNNNNGTG	1 cut(s)	618
AluBI	AGCT	7 cut(s)	25, 54, 136, 424, 511, 664, 847
AluI	AGCT	7 cut(s)	25, 54, 136, 424, 511, 664, 847
AlwI	GGATC	1 cut(s)	652
AoxI	GGCC	2 cut(s)	354, 532
ApeKI	GCWGC	1 cut(s)	844
ApoI	RAATTY	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	3 cut(s)	117, 401, 797
AsuNHI	GCTAGC	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	177
BaeI	ACNNNNGTAYC	2 cut(s)	621, 654
BalI	TGGCCA	2 cut(s)	356, 534
BbvI	GCAGC	1 cut(s)	856
BccI	CCATC	2 cut(s)	13, 406
BciVI	GTATCC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	51, 881
BfmI	CTRYAG	2 cut(s)	754, 852
BfuAI	ACCTGC	1 cut(s)	773
BfuI	GTATCC	1 cut(s)	315
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	1 cut(s)	845
BlsI	GCNGC	1 cut(s)	846
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	247
BmsI	GCATC	3 cut(s)	79, 474, 632
BmtI	GCTAGC	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 665
Bse1I	ACTGG	3 cut(s)	149, 319, 391
Bse3DI	GCAATG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	465, 623
BseLI	CCNNNNNNNGG	2 cut(s)	263, 665
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	534, 541
BseNI	ACTGG	3 cut(s)	149, 319, 391
BseXI	GCAGC	1 cut(s)	856
BshFI	GGCC	2 cut(s)	356, 534
BslI	CCNNNNNNNGG	2 cut(s)	263, 665
BsmI	GAATGC	2 cut(s)	58, 806
BsnI	GGCC	2 cut(s)	356, 534
Bsp143I	GATC	2 cut(s)	340, 644
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	2 cut(s)	356, 534
BspCNI	CTCAG	2 cut(s)	535, 540
BspLI	GGNNCC	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	773
BspOI	GCTAGC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	652
BsrBI	CCGCTC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	293
BsrI	ACTGG	3 cut(s)	149, 319, 391
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	2 cut(s)	340, 644
BssT1I	CCWWGG	1 cut(s)	406
Bst4CI	ACNGT	3 cut(s)	96, 596, 617
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	4 cut(s)	52, 56, 513, 849
BstDEI	CTNAG	2 cut(s)	527, 543
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	465, 623
BstKTI	GATC	2 cut(s)	343, 647
BstMBI	GATC	2 cut(s)	340, 644
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 521
BstSFI	CTRYAG	2 cut(s)	754, 852
BstV1I	GCAGC	1 cut(s)	856
BstX2I	RGATCY	2 cut(s)	340, 644
BstXI	CCANNNNNNTGG	1 cut(s)	174
BstYI	RGATCY	2 cut(s)	340, 644
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	356, 534
BtsCI	GGATG	2 cut(s)	465, 623
BtsIMutI	CAGTG	2 cut(s)	92, 535
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	4 cut(s)	52, 56, 513, 849
Cfr13I	GGNCC	1 cut(s)	177
CviAII	CATG	1 cut(s)	168
DdeI	CTNAG	2 cut(s)	527, 543
DpnI	GATC	2 cut(s)	342, 646
DpnII	GATC	2 cut(s)	340, 644
EaeI	YGGCCR	2 cut(s)	354, 532
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	491
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	1 cut(s)	171
FaiI	YATR	4 cut(s)	169, 311, 674, 908
FatI	CATG	1 cut(s)	167
FauI	CCCGC	1 cut(s)	452
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	1 cut(s)	845
FokI	GGATG	2 cut(s)	452, 610
Fsp4HI	GCNGC	1 cut(s)	845
FspBI	CTAG	2 cut(s)	51, 881
GluI	GCNGC	1 cut(s)	845
HaeIII	GGCC	2 cut(s)	356, 534
Hin1II	CATG	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HindIII	AAGCTT	2 cut(s)	422, 662
HinfI	GANTC	6 cut(s)	77, 148, 442, 473, 502, 559
HphI	GGTGA	3 cut(s)	117, 401, 797
Hpy166II	GTNNAC	3 cut(s)	724, 743, 793
Hpy188I	TCNGA	4 cut(s)	345, 558, 628, 924
Hpy188III	TCNNGA	2 cut(s)	433, 642
Hpy8I	GTNNAC	3 cut(s)	724, 743, 793
HpyAV	CCTTC	2 cut(s)	526, 792
HpyCH4III	ACNGT	3 cut(s)	96, 596, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 521
HpyF3I	CTNAG	2 cut(s)	527, 543
Hsp92II	CATG	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	340, 644
LmnI	GCTCC	2 cut(s)	22, 462
Lsp1109I	GCAGC	1 cut(s)	856
LweI	GCATC	3 cut(s)	79, 474, 632
MaeI	CTAG	2 cut(s)	51, 881
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	342, 646
MbiI	CCGCTC	1 cut(s)	459
MboI	GATC	2 cut(s)	340, 644
MboII	GAAGA	6 cut(s)	28, 272, 393, 497, 599, 639
MflI	RGATCY	2 cut(s)	340, 644
MlsI	TGGCCA	2 cut(s)	356, 534
MluCI	AATT	9 cut(s)	187, 364, 379, 428, 451, 571, 669, 839, 935
MluNI	TGGCCA	2 cut(s)	356, 534
MmeI	TCCRAC	2 cut(s)	658, 667
MnlI	CCTC	4 cut(s)	99, 683, 707, 828
Mox20I	TGGCCA	2 cut(s)	356, 534
MscI	TGGCCA	2 cut(s)	356, 534
MseI	TTAA	3 cut(s)	240, 383, 944
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	2 cut(s)	356, 534
MspA1I	CMGCKG	1 cut(s)	847
Mva1269I	GAATGC	2 cut(s)	58, 806
MwoI	GCNNNNNNNGC	2 cut(s)	41, 521
NdeII	GATC	2 cut(s)	340, 644
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	618
PaqCI	CACCTGC	1 cut(s)	773
PctI	GAATGC	2 cut(s)	58, 806
PfeI	GAWTC	6 cut(s)	77, 148, 442, 473, 502, 559
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	1 cut(s)	846
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	177
PsuI	RGATCY	2 cut(s)	340, 644
PvuII	CAGCTG	1 cut(s)	847
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	240, 383, 944
SatI	GCNGC	1 cut(s)	845
Sau3AI	GATC	2 cut(s)	340, 644
Sau96I	GGNCC	1 cut(s)	177
SfaNI	GCATC	3 cut(s)	79, 474, 632
SfcI	CTRYAG	2 cut(s)	754, 852
SinI	GGWCC	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	9 cut(s)	187, 364, 379, 428, 451, 571, 669, 839, 935
SsiI	CCGC	1 cut(s)	459
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	2 cut(s)	51, 881
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	3 cut(s)	96, 596, 617
TaqII	GACCGA	2 cut(s)	800, 810
TasI	AATT	9 cut(s)	187, 364, 379, 428, 451, 571, 669, 839, 935
TfiI	GAWTC	6 cut(s)	77, 148, 442, 473, 502, 559
Tru1I	TTAA	3 cut(s)	240, 383, 944
Tru9I	TTAA	3 cut(s)	240, 383, 944
TscAI	CASTG	2 cut(s)	99, 535
TseI	GCWGC	1 cut(s)	844
TspDTI	ATGAA	4 cut(s)	90, 102, 515, 685
TspRI	CASTG	2 cut(s)	99, 535
Van91I	CCANNNNNTGG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	177
XagI	CCTNNNNNAGG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	742
XspI	CTAG	2 cut(s)	51, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.