Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005949.1

Orthogroup ID

OG0002426

Physical Location & Seq

Genomic Coordinates Forward (+)

38310 .. 45243

Gene Structure 6934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005949.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atggtgatggcgacttactgtttttgcactgaaattagaggtcgatggctctgggtagtgattggtgggcgatggatatggctctatgagccagaagggatttttacaggaaacaaactaaactgtggcgtaaatcttccccacagttgtgcatccgatactgatgtgtctggatcttcaaataagcccaagcttggaattatagttggagctgttggagggttcatcattttactttttggaggcttggtttactttgtttgtaagcgtagacacaaaggctacaggcgtgaagtttttgtagatgttgcaggtgaagttgaccgaaggattgcattcggtcagttgaaaagattttcgtggagggaattgcagctggctacagacaacttcaatgagaacaatgttctaggacaggggggttttggtaaagtgtataaaggagtgttatctgatactacaaaaatcgctgttaaacggctgaccgattatgagagtcctgggggagatgcagcttttcagcgtgaagttgaaatgataagtgtagctgttcacaggaacctattacgactgattggattttgcacaaccccaacagaacgccttttggtgtatcccttcatgcaaaatttaagtgttgcctatcgtttacgagagattaaaccaggggagcctgttttggattggcctacaagaaagagggtggctttaggcacagcccgtggcttagagtacctacatgaacattgtaatcctaagatcattcatcgagatgttaaggcggctaatgtattacttgacgaagattttgaagcagttgttggtgatttcggcttggcaaagttggtggatgttagaaagactaatgtgacaactcaagttcgtgggacaatgggccacatagcacctgaatacttgtctactgggaagtcatcagaaaggacggatgtcaagaagttggaaagggaaaagagattggatgctatagtagatggaaatctggatagtagttacaacatccaagaggtagaaatgatgatccaagttgcactgctttgtacccaaggatcccctgaagatcgtccactaatgtcggaggtggtacgtatgctggaaggagagggtctggctgagcggtgggaagaatggcagcatgtggaagttactcgcaggcaagagtacgagagactacaaaggagatttgattggggagaagactcggtttataaccaggatgctattgagttatccggtggacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

420

Amino Acids

47.68

Weight (kDa)

6.74

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10290 AT5G10290 AT5G65240 AT5G65240
fragaria_vesca	FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640 FvH4_1g20640
malus_domestica	MD01G1032200.v1.1 MD15G1322900.v1.1 MD15G1323000.v1.1
prunus_persica	Prupe.6G189000_v2.0.a1 Prupe.6G189000_v2.0.a1
pyrus_communis	pycom01g05940 pycom15g28350 pycom15g28360 pycom15g28370 pycom15g28410 pycom15g28430
rosa_chinensis	RchiOBHm_Chr2g0113091
rosa_laevigata	RLG00000018037
rosa_multiflora	Rmu_sc0005949.1_g000009 Rmu_sc0018337.1_g000002 Rmu_sc0034368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130900
rosa_rugosa	Rorug02G0183900 Rorug02G0184000 Rorug02G0184100 Rorug02G0184200 Rorug02G0184300 Rorug02G0184400 Rorug02G0184500 Rorug02G0184600
rosa_samantha	Rh2AG239000 Rh2BG252700 Rh2CG243200 Rh2DG247100
rosa_wichuraiana	Rw2G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1227
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	1135
AccI	GTMKAC	2 cut(s)	271, 920
AciI	CCGC	2 cut(s)	782, 1135
AclWI	GGATC	4 cut(s)	181, 1033, 1062, 1075
AcsI	RAATTY	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	1095
AfaI	GTAC	4 cut(s)	734, 1060, 1104, 1181
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	180, 349, 394, 533, 812
AjnI	CCWGG	3 cut(s)	499, 664, 1230
AjuI	GAANNNNNNNTTGG	2 cut(s)	804, 836
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	5 cut(s)	193, 212, 376, 515, 548
AluI	AGCT	5 cut(s)	193, 212, 376, 515, 548
Alw26I	GTCTC	1 cut(s)	1180
AlwI	GGATC	4 cut(s)	181, 1033, 1062, 1075
AoxI	GGCC	2 cut(s)	686, 895
ApeKI	GCWGC	3 cut(s)	373, 512, 1150
ApoI	RAATTY	1 cut(s)	628
ArsI	GACNNNNNNTTYG	2 cut(s)	791, 823
AspS9I	GGNCC	1 cut(s)	895
AsuHPI	GGTGA	3 cut(s)	16, 326, 836
BaeI	ACNNNNGTAYC	2 cut(s)	150, 183
BamHI	GGATCC	1 cut(s)	1067
BbsI	GAAGAC	1 cut(s)	1221
BbvI	GCAGC	3 cut(s)	385, 524, 1162
BccI	CCATC	3 cut(s)	39, 66, 986
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	3 cut(s)	501, 666, 1232
BciVI	GTATCC	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	1180
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	3 cut(s)	283, 381, 984
BfuAI	ACCTGC	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	624
BisI	GCNGC	4 cut(s)	374, 513, 783, 1151
BlpI	GCTNAGC	1 cut(s)	1131
BlsI	GCNGC	4 cut(s)	375, 514, 784, 1152
Bme1390I	CCNGG	3 cut(s)	501, 666, 1232
BmgT120I	GGNCC	1 cut(s)	895
BmiI	GGNNCC	3 cut(s)	560, 672, 1069
BmrFI	CCNGG	3 cut(s)	501, 666, 1232
BmrI	ACTGGG	1 cut(s)	933
BmsI	GCATC	4 cut(s)	161, 499, 970, 1225
BmuI	ACTGGG	1 cut(s)	933
BoxI	GACNNNNGTC	1 cut(s)	947
BpiI	GAAGAC	1 cut(s)	1221
Bpu1102I	GCTNAGC	1 cut(s)	1131
BpuEI	CTTGAG	1 cut(s)	861
BsaAI	YACGTR	1 cut(s)	1106
BsaBI	GATNNNNATC	1 cut(s)	996
BsaJI	CCNNGG	4 cut(s)	500, 665, 721, 1063
BsaWI	WCCGGW	1 cut(s)	1250
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	928
Bse8I	GATNNNNATC	1 cut(s)	996
BseBI	CCWGG	3 cut(s)	501, 666, 1232
BseDI	CCNNGG	4 cut(s)	500, 665, 721, 1063
BseGI	GGATG	6 cut(s)	152, 856, 952, 985, 1017, 1240
BseJI	GATNNNNATC	1 cut(s)	996
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	1122
BseNI	ACTGG	1 cut(s)	928
BseXI	GCAGC	3 cut(s)	385, 524, 1162
BshFI	GGCC	2 cut(s)	688, 897
BsiSI	CCGG	1 cut(s)	1251
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	1180
BsmFI	GGGAC	1 cut(s)	901
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	688, 897
Bsp143I	GATC	5 cut(s)	173, 759, 1038, 1067, 1078
Bsp1720I	GCTNAGC	1 cut(s)	1131
BspACI	CCGC	2 cut(s)	782, 1135
BspANI	GGCC	2 cut(s)	688, 897
BspCNI	CTCAG	1 cut(s)	1123
BspLI	GGNNCC	3 cut(s)	560, 672, 1069
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	4 cut(s)	181, 1033, 1062, 1075
BsrBI	CCGCTC	1 cut(s)	1135
BsrI	ACTGG	1 cut(s)	928
BssECI	CCNNGG	4 cut(s)	500, 665, 721, 1063
BssMI	GATC	5 cut(s)	173, 759, 1038, 1067, 1078
BssT1I	CCWWGG	1 cut(s)	1063
Bst2UI	CCWGG	3 cut(s)	501, 666, 1232
Bst4CI	ACNGT	3 cut(s)	20, 125, 146
BstBAI	YACGTR	1 cut(s)	1106
BstC8I	GCNNGC	2 cut(s)	378, 1172
BstDEI	CTNAG	3 cut(s)	727, 756, 1131
BstDSI	CCRYGG	1 cut(s)	721
BstF5I	GGATG	6 cut(s)	152, 856, 952, 985, 1017, 1240
BstKTI	GATC	5 cut(s)	176, 762, 1041, 1070, 1081
BstMAI	GTCTC	1 cut(s)	1180
BstMBI	GATC	5 cut(s)	173, 759, 1038, 1067, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	3 cut(s)	501, 666, 1232
BstNSI	RCATGY	1 cut(s)	1157
BstPAI	GACNNNNGTC	1 cut(s)	947
BstSCI	CCNGG	3 cut(s)	499, 664, 1230
BstSFI	CTRYAG	3 cut(s)	283, 381, 984
BstSNI	TACGTA	1 cut(s)	1106
BstV1I	GCAGC	3 cut(s)	385, 524, 1162
BstV2I	GAAGAC	1 cut(s)	1221
BstX2I	RGATCY	2 cut(s)	173, 1067
BstYI	RGATCY	2 cut(s)	173, 1067
BsuI	GTATCC	1 cut(s)	624
BsuRI	GGCC	2 cut(s)	688, 897
BtgI	CCRYGG	1 cut(s)	721
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	6 cut(s)	152, 856, 952, 985, 1017, 1240
BtsI	GCAGTG	1 cut(s)	1049
BtsIMutI	CAGTG	2 cut(s)	27, 1049
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	378, 1172
Cfr13I	GGNCC	1 cut(s)	895
Csp6I	GTAC	4 cut(s)	733, 1059, 1103, 1180
CspCI	CAANNNNNGTGG	2 cut(s)	828, 863
CviAII	CATG	3 cut(s)	622, 740, 1154
CviQI	GTAC	4 cut(s)	733, 1059, 1103, 1180
DdeI	CTNAG	3 cut(s)	727, 756, 1131
DpnI	GATC	5 cut(s)	175, 761, 1040, 1069, 1080
DpnII	GATC	5 cut(s)	173, 759, 1038, 1067, 1078
Eco105I	TACGTA	1 cut(s)	1106
Eco130I	CCWWGG	1 cut(s)	1063
Eco57I	CTGAAG	1 cut(s)	1095
EcoRII	CCWGG	3 cut(s)	499, 664, 1230
EcoT14I	CCWWGG	1 cut(s)	1063
ErhI	CCWWGG	1 cut(s)	1063
FaeI	CATG	3 cut(s)	625, 743, 1157
FaqI	GGGAC	1 cut(s)	901
FatI	CATG	3 cut(s)	621, 739, 1153
FblI	GTMKAC	2 cut(s)	271, 920
Fnu4HI	GCNGC	4 cut(s)	374, 513, 783, 1151
FokI	GGATG	6 cut(s)	139, 863, 959, 992, 1004, 1247
Fsp4HI	GCNGC	4 cut(s)	374, 513, 783, 1151
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	4 cut(s)	374, 513, 783, 1151
HaeIII	GGCC	2 cut(s)	688, 897
HapII	CCGG	1 cut(s)	1251
Hin1II	CATG	3 cut(s)	625, 743, 1157
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	496, 1217
HpaII	CCGG	1 cut(s)	1251
HphI	GGTGA	3 cut(s)	16, 326, 836
Hpy166II	GTNNAC	8 cut(s)	253, 272, 322, 553, 650, 921, 1085, 1256
Hpy188I	TCNGA	4 cut(s)	157, 454, 937, 1096
Hpy188III	TCNNGA	4 cut(s)	171, 770, 952, 1001
Hpy8I	GTNNAC	8 cut(s)	253, 272, 322, 553, 650, 921, 1085, 1256
HpyAV	CCTTC	4 cut(s)	89, 321, 628, 1109
HpyCH4III	ACNGT	3 cut(s)	20, 125, 146
HpyCH4IV	ACGT	1 cut(s)	1105
HpyCH4V	TGCA	9 cut(s)	27, 152, 311, 335, 373, 512, 585, 625, 1049
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	3 cut(s)	727, 756, 1131
HpySE526I	ACGT	1 cut(s)	1105
Hsp92II	CATG	3 cut(s)	625, 743, 1157
Kzo9I	GATC	5 cut(s)	173, 759, 1038, 1067, 1078
LmnI	GCTCC	2 cut(s)	209, 670
Lsp1109I	GCAGC	3 cut(s)	385, 524, 1162
LweI	GCATC	4 cut(s)	161, 499, 970, 1225
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	1 cut(s)	1105
MaeIII	GTNAC	3 cut(s)	868, 1010, 1162
MalI	GATC	5 cut(s)	175, 761, 1040, 1069, 1080
MbiI	CCGCTC	1 cut(s)	1135
MboI	GATC	5 cut(s)	173, 759, 1038, 1067, 1078
MboII	GAAGA	6 cut(s)	128, 168, 815, 1088, 1154, 1226
MflI	RGATCY	2 cut(s)	173, 1067
MluCI	AATT	4 cut(s)	33, 198, 368, 628
MlyI	GAGTC	2 cut(s)	505, 1211
MmeI	TCCRAC	4 cut(s)	187, 196, 939, 1074
MnlI	CCTC	8 cut(s)	32, 212, 236, 357, 693, 1018, 1090, 1114
MseI	TTAA	4 cut(s)	474, 632, 660, 777
MslI	CAYNNNNRTG	2 cut(s)	147, 771
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	1 cut(s)	1251
MspR9I	CCNGG	3 cut(s)	501, 666, 1232
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	3 cut(s)	501, 666, 1232
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	5 cut(s)	173, 759, 1038, 1067, 1078
NlaIII	CATG	3 cut(s)	625, 743, 1157
NlaIV	GGNNCC	3 cut(s)	560, 672, 1069
NmuCI	GTSAC	1 cut(s)	868
NspI	RCATGY	1 cut(s)	1157
OliI	CACNNNNGTG	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	302
PctI	GAATGC	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	375, 514, 784, 1152
PleI	GAGTC	2 cut(s)	504, 1211
PpsI	GAGTC	2 cut(s)	504, 1211
Ppu21I	YACGTR	1 cut(s)	1106
PshAI	GACNNNNGTC	1 cut(s)	947
PsiI	TTATAA	1 cut(s)	1227
Psp6I	CCWGG	3 cut(s)	499, 664, 1230
PspGI	CCWGG	3 cut(s)	499, 664, 1230
PspN4I	GGNNCC	3 cut(s)	560, 672, 1069
PspPI	GGNCC	1 cut(s)	895
PsuI	RGATCY	2 cut(s)	173, 1067
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	4 cut(s)	734, 1060, 1104, 1181
RsaNI	GTAC	4 cut(s)	733, 1059, 1103, 1180
RseI	CAYNNNNRTG	2 cut(s)	147, 771
SaqAI	TTAA	4 cut(s)	474, 632, 660, 777
SatI	GCNGC	4 cut(s)	374, 513, 783, 1151
Sau3AI	GATC	5 cut(s)	173, 759, 1038, 1067, 1078
Sau96I	GGNCC	1 cut(s)	895
SchI	GAGTC	2 cut(s)	505, 1211
ScrFI	CCNGG	3 cut(s)	501, 666, 1232
SfaNI	GCATC	4 cut(s)	161, 499, 970, 1225
SfcI	CTRYAG	3 cut(s)	283, 381, 984
SmiMI	CAYNNNNRTG	2 cut(s)	147, 771
SmlI	CTYRAG	1 cut(s)	876
SmoI	CTYRAG	1 cut(s)	876
SnaBI	TACGTA	1 cut(s)	1106
Sse9I	AATT	4 cut(s)	33, 198, 368, 628
SsiI	CCGC	2 cut(s)	782, 1135
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	3 cut(s)	499, 664, 1230
StyI	CCWWGG	1 cut(s)	1063
TaaI	ACNGT	3 cut(s)	20, 125, 146
TaiI	ACGT	1 cut(s)	1108
TaqI	TCGA	2 cut(s)	43, 769
TaqII	GACCGA	3 cut(s)	329, 339, 500
TasI	AATT	4 cut(s)	33, 198, 368, 628
TauI	GCSGC	1 cut(s)	785
Tru1I	TTAA	4 cut(s)	474, 632, 660, 777
Tru9I	TTAA	4 cut(s)	474, 632, 660, 777
TscAI	CASTG	2 cut(s)	34, 1056
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	3 cut(s)	373, 512, 1150
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	4 cut(s)	214, 610, 755, 756
TspGWI	ACGGA	1 cut(s)	959
TspRI	CASTG	2 cut(s)	34, 1056
XapI	RAATTY	1 cut(s)	628
XceI	RCATGY	1 cut(s)	1157
XmiI	GTMKAC	2 cut(s)	271, 920
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.