RLG00000018037
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
24704557 .. 24710561
6005 bp
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UTR
Exon/CDS
Intron
RLM00000018037

Sequence Viewer

Length: 1818 bp
ATGGAGCTACTATTTGCAGTTCTGGCACTCGCTAGCTTGCATTCTTTTGTATTGCCAGATCCACAAGGAGATGCACTGTATTCATTGAGGACTTCATTGATTACTTCACCCAATCAGCTCAAGGACTGGAATCCCAACCAAGTCAATCCATGCACTTGGTCCAATGTGAATTGCGACACTAACAACAATGTCGTTTCTGTAACTTTGTCAAATATTGGATTTAATGGAACCTTATCCCCTAAAGTAGGAAACCTGAAAACTCTTGAAACACTTGCATTGCAAGGAAATGGCATAACTGGTGGGATACCAAAAGAGTTTGGAGATTTGACAAGTTTGGCCACCTTGAATTTGGAAAATAATAATTTAACTGGTGAAATACCATCTTCCCTTGGTAATCTGAAAAAGCTTCAATTCTTGACTTTGAATCAAAACAATTTGAGCGGGAGCATCCCAGATTCACTTTCAAATCTTTCAACTTTGATGAATCTTCAGCTCGCCTTCAATGCTCTCAGTGGTCAAATACCTGAGGAGTTATTTCAGATTCAAAAATACAATTTTACAGGAAACCACCTAAACTGTGGTGTAAATCTTCCCCACCGTTGTGCATCCGATACTGATGTGTCTGGATCTTCAAATAAGCCAAAGCTTGGAATTATAGTTGGAGTTGTTGGAGGGTTCATCATTTTACTTTTTGGAGGCTTGGTTTACTTTGTTTGTAAACATAGACACAAAGGCTACAAGCCTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGACCGAAGGATTGCATTCGGTCAGTTGAAAAGATTTTCGTGGAGGGAATTGCAGCTGGCTACAGAGAACTTCAATGAGAAAAATGTTCTAGGACAGGGGGGTTTTGGTAAAGTCTATAAAGGAGTGTTATCTGATACTACAAAAATCGCTGTTAAACGGCTGACCGATTATGAGAGTCCTGGGGGAGATGCAGCTTTTCAGCGTGAAGTTGAAATGATAAGTGTAGCTGTTCACAGGAACCTGTTACGACTGATTGGATTTTGCACAACCCCAACAGAACGCCTTTTGGTGTATCCCTTCATGCAAAATTTAAGTGTTGCCTATCGTTTACGAGAGATTAAACCGGGGGAGCCTGTTTTGGATTGGCCTACAAGAAAGAGGGTGGCTTTAGGCACAGCCCGTGGCTTAGAGTACCTACATGAACATTGTAATCCTAAGATCATTCATCGAGATGTTAAGGCGGCTAATGTATTACTTGACGAAGATTTTGAAGCAGTTGTTGGTGATTTCGGCTTGGCAAAGTTGGTGGATGTTAGAAAGACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCACATAGCACCTGAATACTTGTCTACTGGGAAGTCATCAGAAAGGACGGATGTTTTTGGCTATGGGATTATGCTTTTGGAGCTTGTAACAGGACAGCGGGCAATTGATTTCTCACGATTGGAAGAAGAAGATGATGTTTTGTTGCTCGACCATGTCAAGAAGTTGGAAAGGGAAAAGAGACTGGATGCTATAGTAGATGGAAATCTGGATAGTAGTTACAACATCCAAGAGGTAGAAATGATGATCCAAGTTGCACTGCTTTGTACCCAAGGATCCCCCGAAGATCGTCCACTAATGTCGGAGGTGGTACGTATGCTGGAAGGAGAGGGTCTGGCTGAGCGATGGGAAGAATGGCAGCATGTTGAAGTTACTCGCAGGCAAGAGTATGAGAGACTACAGAGGAGATTTGATTGGGGAGAAGACTCGGTTTATAACCAGGATGCTATCGAGTTATCTGGTGGACGATGA

Protein Analysis

606

Amino Acids

67.41

Weight (kDa)

5.54

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 20 - 59 4.6e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 81 - 173 2.9e-11 Leucine-rich repeat region
Pkinase PF00069 282 - 551 1.7e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 285 - 556 1.1e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1782
AarI CACCTGC 1 cut(s) 755
Acc36I ACCTGC 1 cut(s) 755
AccB7I CCANNNNNTGG 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 1373
AciI CCGC 3 cut(s) 441, 1235, 1447
AclWI GGATC 5 cut(s) 53, 634, 1588, 1617, 1630
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 2 cut(s) 346, 1081
AcuI CTGAAG 2 cut(s) 473, 765
AfaI GTAC 3 cut(s) 1187, 1615, 1659
AfiI CCNNNNNNNGG 2 cut(s) 245, 647
AjnI CCWGG 2 cut(s) 952, 1785
AjuI GAANNNNNNNTTGG 2 cut(s) 1257, 1289
AleI CACNNNNGTG 1 cut(s) 600
Alw26I GTCTC 2 cut(s) 1522, 1735
AlwI GGATC 5 cut(s) 53, 634, 1588, 1617, 1630
AoxI GGCC 3 cut(s) 336, 1139, 1348
ApeKI GCWGC 3 cut(s) 826, 965, 1705
ApoI RAATTY 2 cut(s) 346, 1081
ArsI GACNNNNNNTTYG 2 cut(s) 1244, 1276
AspS9I GGNCC 2 cut(s) 159, 1348
AsuC2I CCSGG 1 cut(s) 1119
AsuHPI GGTGA 4 cut(s) 99, 383, 779, 1289
AsuNHI GCTAGC 1 cut(s) 32
AvaII GGWCC 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 525
BaeI ACNNNNGTAYC 2 cut(s) 603, 636
BalI TGGCCA 1 cut(s) 338
BamHI GGATCC 1 cut(s) 1622
BbsI GAAGAC 1 cut(s) 1776
BbvI GCAGC 3 cut(s) 838, 977, 1717
BccI CCATC 3 cut(s) 388, 1541, 1686
BceAI ACGGC 1 cut(s) 947
BciT130I CCWGG 2 cut(s) 954, 1787
BciVI GTATCC 2 cut(s) 297, 1077
BcnI CCSGG 1 cut(s) 1119
BcoDI GTCTC 2 cut(s) 1522, 1735
BfaI CTAG 2 cut(s) 33, 863
BfmI CTRYAG 3 cut(s) 834, 1539, 1745
BfuAI ACCTGC 1 cut(s) 755
BfuI GTATCC 2 cut(s) 297, 1077
BisI GCNGC 4 cut(s) 827, 966, 1236, 1706
BlpI GCTNAGC 1 cut(s) 1686
BlsI GCNGC 4 cut(s) 828, 967, 1237, 1707
Bme1390I CCNGG 3 cut(s) 954, 1119, 1787
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 159, 1348
BmiI GGNNCC 4 cut(s) 229, 1013, 1125, 1624
BmrFI CCNGG 3 cut(s) 954, 1119, 1787
BmrI ACTGGG 1 cut(s) 1386
BmsI GCATC 6 cut(s) 61, 456, 614, 952, 1525, 1780
BmtI GCTAGC 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 1386
BpiI GAAGAC 1 cut(s) 1776
Bpu1102I GCTNAGC 1 cut(s) 1686
BpuEI CTTGAG 2 cut(s) 104, 1314
BpuMI CCSGG 1 cut(s) 1119
BsaAI YACGTR 1 cut(s) 1661
BsaBI GATNNNNATC 1 cut(s) 1551
BsaJI CCNNGG 5 cut(s) 388, 953, 1118, 1174, 1618
BsaXI ACNNNNNCTCC 2 cut(s) 687, 717
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 647
Bse1I ACTGG 5 cut(s) 131, 301, 373, 1381, 1536
Bse21I CCTNAGG 1 cut(s) 525
Bse3DI GCAATG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 1551
BseBI CCWGG 2 cut(s) 954, 1787
BseDI CCNNGG 5 cut(s) 388, 953, 1118, 1174, 1618
BseGI GGATG 7 cut(s) 447, 605, 1309, 1405, 1540, 1572, 1795
BseJI GATNNNNATC 1 cut(s) 1551
BseLI CCNNNNNNNGG 2 cut(s) 245, 647
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 3 cut(s) 516, 523, 1677
BseNI ACTGG 5 cut(s) 131, 301, 373, 1381, 1536
BseRI GAGGAG 2 cut(s) 542, 1765
BseXI GCAGC 3 cut(s) 838, 977, 1717
BshFI GGCC 3 cut(s) 338, 1141, 1350
BsiSI CCGG 1 cut(s) 1118
BslFI GGGAC 1 cut(s) 1354
BslI CCNNNNNNNGG 2 cut(s) 245, 647
BsmAI GTCTC 2 cut(s) 1522, 1735
BsmFI GGGAC 1 cut(s) 1354
BsmI GAATGC 2 cut(s) 40, 788
BsnI GGCC 3 cut(s) 338, 1141, 1350
Bsp143I GATC 6 cut(s) 58, 626, 1212, 1593, 1622, 1633
Bsp1720I GCTNAGC 1 cut(s) 1686
BspACI CCGC 3 cut(s) 441, 1235, 1447
BspANI GGCC 3 cut(s) 338, 1141, 1350
BspCNI CTCAG 3 cut(s) 517, 522, 1678
BspLI GGNNCC 4 cut(s) 229, 1013, 1125, 1624
BspMI ACCTGC 1 cut(s) 755
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 5 cut(s) 53, 634, 1588, 1617, 1630
BsrBI CCGCTC 1 cut(s) 441
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 5 cut(s) 131, 301, 373, 1381, 1536
BssECI CCNNGG 5 cut(s) 388, 953, 1118, 1174, 1618
BssMI GATC 6 cut(s) 58, 626, 1212, 1593, 1622, 1633
BssT1I CCWWGG 2 cut(s) 388, 1618
Bst2UI CCWGG 2 cut(s) 954, 1787
Bst4CI ACNGT 3 cut(s) 78, 578, 599
BstBAI YACGTR 1 cut(s) 1661
BstC8I GCNNGC 6 cut(s) 34, 38, 495, 831, 1449, 1727
BstDEI CTNAG 5 cut(s) 509, 525, 1180, 1209, 1686
BstDSI CCRYGG 1 cut(s) 1174
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 7 cut(s) 447, 605, 1309, 1405, 1540, 1572, 1795
BstKTI GATC 6 cut(s) 61, 629, 1215, 1596, 1625, 1636
BstMAI GTCTC 2 cut(s) 1522, 1735
BstMBI GATC 6 cut(s) 58, 626, 1212, 1593, 1622, 1633
BstMWI GCNNNNNNNGC 3 cut(s) 23, 503, 1429
BstNI CCWGG 2 cut(s) 954, 1787
BstNSI RCATGY 1 cut(s) 1712
BstSCI CCNGG 3 cut(s) 952, 1117, 1785
BstSFI CTRYAG 3 cut(s) 834, 1539, 1745
BstSNI TACGTA 1 cut(s) 1661
BstV1I GCAGC 3 cut(s) 838, 977, 1717
BstV2I GAAGAC 1 cut(s) 1776
BstX2I RGATCY 3 cut(s) 58, 626, 1622
BstXI CCANNNNNNTGG 1 cut(s) 156
BstYI RGATCY 3 cut(s) 58, 626, 1622
Bsu36I CCTNAGG 1 cut(s) 525
BsuI GTATCC 2 cut(s) 297, 1077
BsuRI GGCC 3 cut(s) 338, 1141, 1350
BtgI CCRYGG 1 cut(s) 1174
BtgZI GCGATG 1 cut(s) 1705
BtsCI GGATG 7 cut(s) 447, 605, 1309, 1405, 1540, 1572, 1795
BtsI GCAGTG 1 cut(s) 1604
BtsIMutI CAGTG 3 cut(s) 74, 517, 1604
BveI ACCTGC 1 cut(s) 755
Cac8I GCNNGC 6 cut(s) 34, 38, 495, 831, 1449, 1727
Cfr13I GGNCC 2 cut(s) 159, 1348
Csp6I GTAC 3 cut(s) 1186, 1614, 1658
CspCI CAANNNNNGTGG 2 cut(s) 1281, 1316
CviAII CATG 5 cut(s) 150, 1075, 1193, 1502, 1709
CviQI GTAC 3 cut(s) 1186, 1614, 1658
DdeI CTNAG 5 cut(s) 509, 525, 1180, 1209, 1686
DpnI GATC 6 cut(s) 60, 628, 1214, 1595, 1624, 1635
DpnII GATC 6 cut(s) 58, 626, 1212, 1593, 1622, 1633
EaeI YGGCCR 1 cut(s) 336
Eco105I TACGTA 1 cut(s) 1661
Eco130I CCWWGG 2 cut(s) 388, 1618
Eco47I GGWCC 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 473, 765
Eco81I CCTNAGG 1 cut(s) 525
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 952, 1785
EcoT14I CCWWGG 2 cut(s) 388, 1618
ErhI CCWWGG 2 cut(s) 388, 1618
FaeI CATG 5 cut(s) 153, 1078, 1196, 1505, 1712
FaqI GGGAC 1 cut(s) 1354
FatI CATG 5 cut(s) 149, 1074, 1192, 1501, 1708
FauI CCCGC 2 cut(s) 434, 1440
FblI GTMKAC 1 cut(s) 1373
Fnu4HI GCNGC 4 cut(s) 827, 966, 1236, 1706
FokI GGATG 7 cut(s) 434, 592, 1316, 1412, 1547, 1559, 1802
Fsp4HI GCNGC 4 cut(s) 827, 966, 1236, 1706
FspBI CTAG 2 cut(s) 33, 863
GluI GCNGC 4 cut(s) 827, 966, 1236, 1706
HaeIII GGCC 3 cut(s) 338, 1141, 1350
HapII CCGG 1 cut(s) 1118
Hin1II CATG 5 cut(s) 153, 1078, 1196, 1505, 1712
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 2 cut(s) 404, 644
HinfI GANTC 7 cut(s) 130, 424, 455, 484, 541, 949, 1772
HpaII CCGG 1 cut(s) 1118
HphI GGTGA 4 cut(s) 99, 383, 779, 1289
Hpy166II GTNNAC 8 cut(s) 706, 719, 775, 1006, 1103, 1374, 1640, 1811
Hpy188I TCNGA 6 cut(s) 399, 540, 610, 907, 1390, 1651
Hpy188III TCNNGA 7 cut(s) 263, 415, 624, 1223, 1464, 1507, 1556
Hpy8I GTNNAC 8 cut(s) 706, 719, 775, 1006, 1103, 1374, 1640, 1811
HpyAV CCTTC 4 cut(s) 508, 774, 1081, 1664
HpyCH4III ACNGT 3 cut(s) 78, 578, 599
HpyCH4IV ACGT 1 cut(s) 1660
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 503, 1429
HpyF3I CTNAG 5 cut(s) 509, 525, 1180, 1209, 1686
HpySE526I ACGT 1 cut(s) 1660
Hsp92II CATG 5 cut(s) 153, 1078, 1196, 1505, 1712
Kzo9I GATC 6 cut(s) 58, 626, 1212, 1593, 1622, 1633
LmnI GCTCC 4 cut(s) 4, 444, 1123, 1429
Lsp1109I GCAGC 3 cut(s) 838, 977, 1717
LweI GCATC 6 cut(s) 61, 456, 614, 952, 1525, 1780
MaeI CTAG 2 cut(s) 33, 863
MaeII ACGT 1 cut(s) 1660
MaeIII GTNAC 6 cut(s) 199, 1017, 1321, 1435, 1565, 1717
MalI GATC 6 cut(s) 60, 628, 1214, 1595, 1624, 1635
MbiI CCGCTC 1 cut(s) 441
MboI GATC 6 cut(s) 58, 626, 1212, 1593, 1622, 1633
MfeI CAATTG 1 cut(s) 1452
MflI RGATCY 3 cut(s) 58, 626, 1622
MlsI TGGCCA 1 cut(s) 338
MluNI TGGCCA 1 cut(s) 338
MlyI GAGTC 2 cut(s) 958, 1766
MmeI TCCRAC 4 cut(s) 640, 649, 1494, 1629
Mox20I TGGCCA 1 cut(s) 338
MscI TGGCCA 1 cut(s) 338
MseI TTAA 6 cut(s) 222, 365, 927, 1085, 1113, 1230
MslI CAYNNNNRTG 2 cut(s) 600, 1224
Msp20I TGGCCA 1 cut(s) 338
MspA1I CMGCKG 2 cut(s) 829, 1447
MspI CCGG 1 cut(s) 1118
MspR9I CCNGG 3 cut(s) 954, 1119, 1787
MunI CAATTG 1 cut(s) 1452
Mva1269I GAATGC 2 cut(s) 40, 788
MvaI CCWGG 2 cut(s) 954, 1787
MwoI GCNNNNNNNGC 3 cut(s) 23, 503, 1429
NciI CCSGG 1 cut(s) 1119
NdeII GATC 6 cut(s) 58, 626, 1212, 1593, 1622, 1633
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 5 cut(s) 153, 1078, 1196, 1505, 1712
NlaIV GGNNCC 4 cut(s) 229, 1013, 1125, 1624
NmuCI GTSAC 1 cut(s) 1321
NspI RCATGY 1 cut(s) 1712
OliI CACNNNNGTG 1 cut(s) 600
PaqCI CACCTGC 1 cut(s) 755
PctI GAATGC 2 cut(s) 40, 788
PfeI GAWTC 5 cut(s) 130, 424, 455, 484, 541
PflFI GACNNNGTC 1 cut(s) 1502
PflMI CCANNNNNTGG 1 cut(s) 647
PkrI GCNGC 4 cut(s) 828, 967, 1237, 1707
PleI GAGTC 2 cut(s) 957, 1766
PpsI GAGTC 2 cut(s) 957, 1766
Ppu21I YACGTR 1 cut(s) 1661
PsiI TTATAA 1 cut(s) 1782
Psp6I CCWGG 2 cut(s) 952, 1785
PspGI CCWGG 2 cut(s) 952, 1785
PspN4I GGNNCC 4 cut(s) 229, 1013, 1125, 1624
PspPI GGNCC 2 cut(s) 159, 1348
PsuI RGATCY 3 cut(s) 58, 626, 1622
PsyI GACNNNGTC 1 cut(s) 1502
PvuII CAGCTG 1 cut(s) 829
RsaI GTAC 3 cut(s) 1187, 1615, 1659
RsaNI GTAC 3 cut(s) 1186, 1614, 1658
RseI CAYNNNNRTG 2 cut(s) 600, 1224
SaqAI TTAA 6 cut(s) 222, 365, 927, 1085, 1113, 1230
SatI GCNGC 4 cut(s) 827, 966, 1236, 1706
Sau3AI GATC 6 cut(s) 58, 626, 1212, 1593, 1622, 1633
Sau96I GGNCC 2 cut(s) 159, 1348
SchI GAGTC 2 cut(s) 958, 1766
ScrFI CCNGG 3 cut(s) 954, 1119, 1787
SfaNI GCATC 6 cut(s) 61, 456, 614, 952, 1525, 1780
SfcI CTRYAG 3 cut(s) 834, 1539, 1745
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 2 cut(s) 600, 1224
SmlI CTYRAG 2 cut(s) 119, 1329
SmoI CTYRAG 2 cut(s) 119, 1329
SnaBI TACGTA 1 cut(s) 1661
SsiI CCGC 3 cut(s) 441, 1235, 1447
SspI AATATT 1 cut(s) 214
SspMI CTAG 2 cut(s) 33, 863
StyD4I CCNGG 3 cut(s) 952, 1117, 1785
StyI CCWWGG 2 cut(s) 388, 1618
TaaI ACNGT 3 cut(s) 78, 578, 599
TaiI ACGT 1 cut(s) 1663
TaqI TCGA 3 cut(s) 1222, 1497, 1797
TaqII GACCGA 3 cut(s) 782, 792, 953
TauI GCSGC 1 cut(s) 1238
TfiI GAWTC 5 cut(s) 130, 424, 455, 484, 541
Tru1I TTAA 6 cut(s) 222, 365, 927, 1085, 1113, 1230
Tru9I TTAA 6 cut(s) 222, 365, 927, 1085, 1113, 1230
TscAI CASTG 3 cut(s) 81, 517, 1611
TseFI GTSAC 1 cut(s) 1321
TseI GCWGC 3 cut(s) 826, 965, 1705
Tsp45I GTSAC 1 cut(s) 1321
TspDTI ATGAA 7 cut(s) 72, 84, 497, 667, 1063, 1208, 1209
TspGWI ACGGA 1 cut(s) 1412
TspRI CASTG 3 cut(s) 81, 517, 1611
Tth111I GACNNNGTC 1 cut(s) 1502
Van91I CCANNNNNTGG 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 159
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 2 cut(s) 346, 1081
XceI RCATGY 1 cut(s) 1712
XcmI CCANNNNNNNNNTGG 2 cut(s) 346, 575
XmiI GTMKAC 1 cut(s) 1373
XspI CTAG 2 cut(s) 33, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.