Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004182

Physical Location & Seq

Genomic Coordinates Reverse (-)

26245134 .. 26246960

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGAACACTCAAGATTTCTCGCCACCACACATGGATGCTTCTCGGCCGTCACTAGGATTCCCTCTTGGCACAGCTCTGCTTCTTATCATCATTTTCAGCCTCTCCGGAATATTCTCTTGTTGTTACCATTGGGACAAACATCGTTCTCTCCGCCGCTCTTTGGCCAATGGTCGTCCCTCCGCCGACATCGAGTCTAATCCTTACAAACCCAAACCCCCTTTTCCGGAAATGAAGAAACCGCAGAATCTGAGCGTACCGGTGTTAATGCCAGGAGATAATACACCCAAATTCATAGCATTGCCGTGTCCGTGTGCACCACCTCGACCTGAAAAACTCACCGTAGATGTCCAAACTCCGCCGCAATCACCGCCTGTTAAGCCGGCGCGTTTTCCTGTTCCTTTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.08

Weight (kDa)

9.21

Isoelectric Point (pI)

71.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65660
fragaria_vesca	FvH4_1g18910 FvH4_1g18910 FvH4_1g18910 FvH4_5g33800 FvH4_5g33800
malus_domestica	MD01G1045700.v1.1 MD08G1207400.v1.1 MD15G1306100.v1.1 MD15G1391900.v1.1
prunus_persica	Prupe.1G540600_v2.0.a1 Prupe.6G210400_v2.0.a1
pyrus_communis	pycom15g35270
rosa_chinensis	RchiOBHm_Chr2g0109921 RchiOBHm_Chr7g0233121
rosa_laevigata	RLG00000001295 RLG00000017769
rosa_multiflora	Rmu_sc0001362.1_g000012 Rmu_sc0005173.1_g000017
rosa_roxburghii	Rroxscaffold_2G00133880 Rroxscaffold_3G00227630
rosa_rugosa	Rorug02G0163800 Rorug07G0278400 Rorug07G0278500 Rorug07G0278600
rosa_samantha	Rh2BG225800 Rh2CG218000 Rh7AG434200 Rh7BG406700 Rh7CG453200 Rh7DG422500
rosa_wichuraiana	Rw2G016660 Rw7G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	159
AccII	CGCG	1 cut(s)	388
AccIII	TCCGGA	2 cut(s)	107, 226
AciI	CCGC	7 cut(s)	154, 157, 183, 242, 359, 362, 371
AcoI	YGGCCR	2 cut(s)	47, 165
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	56, 163, 226
AgeI	ACCGGT	1 cut(s)	259
AhdI	GACNNNNNGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw21I	GWGCWC	1 cut(s)	319
Alw44I	GTGCAC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	250
Aor13HI	TCCGGA	2 cut(s)	107, 226
AoxI	GGCC	2 cut(s)	47, 165
ApaLI	GTGCAC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	290
AsiGI	ACCGGT	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	331, 360
BaeGI	GKGCMC	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	319
BceAI	ACGGC	2 cut(s)	34, 289
BciT130I	CCWGG	1 cut(s)	273
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	2 cut(s)	157, 362
BlsI	GCNGC	2 cut(s)	158, 363
Bme1390I	CCNGG	1 cut(s)	273
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	28
BsaWI	WCCGGW	3 cut(s)	107, 226, 259
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 163, 226
Bse118I	RCCGGY	2 cut(s)	259, 382
Bse3DI	GCAATG	1 cut(s)	299
BseAI	TCCGGA	2 cut(s)	107, 226
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	3 cut(s)	56, 163, 226
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	319
BseX3I	CGGCCG	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	388
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	49, 167
BshTI	ACCGGT	1 cut(s)	259
BsiEI	CGRYCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	4 cut(s)	108, 227, 260, 383
BslFI	GGGAC	2 cut(s)	149, 162
BslI	CCNNNNNNNGG	3 cut(s)	56, 163, 226
BsmFI	GGGAC	2 cut(s)	149, 162
BsnI	GGCC	2 cut(s)	49, 167
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp13I	TCCGGA	2 cut(s)	107, 226
BspACI	CCGC	7 cut(s)	154, 157, 183, 242, 359, 362, 371
BspANI	GGCC	2 cut(s)	49, 167
BspCNI	CTCAG	1 cut(s)	243
BspEI	TCCGGA	2 cut(s)	107, 226
BspFNI	CGCG	1 cut(s)	388
BsrBI	CCGCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	299
BsrFI	RCCGGY	2 cut(s)	259, 382
BssAI	RCCGGY	2 cut(s)	259, 382
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	388
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 379
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	319
BstUI	CGCG	1 cut(s)	388
BstZI	CGGCCG	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	49, 167
BtsCI	GGATG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	388
Cfr10I	RCCGGY	2 cut(s)	259, 382
Csp6I	GTAC	1 cut(s)	257
CspAI	ACCGGT	1 cut(s)	259
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	5 cut(s)	49, 77, 102, 167, 382
CviKI_1	RGCY	5 cut(s)	49, 77, 102, 167, 382
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	251
DriI	GACNNNNNGTC	1 cut(s)	193
EaeI	YGGCCR	2 cut(s)	47, 165
EagI	CGGCCG	1 cut(s)	47
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EciI	GGCGGA	3 cut(s)	143, 172, 348
EclXI	CGGCCG	1 cut(s)	47
Eco52I	CGGCCG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	37
FaiI	YATR	2 cut(s)	35, 296
FaqI	GGGAC	2 cut(s)	149, 162
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	157, 362
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	157, 362
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	157, 362
HaeIII	GGCC	2 cut(s)	49, 167
HapII	CCGG	4 cut(s)	108, 227, 260, 383
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	3 cut(s)	60, 194, 247
HpaII	CCGG	4 cut(s)	108, 227, 260, 383
HphI	GGTGA	2 cut(s)	331, 360
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	3 cut(s)	14, 108, 227
Hpy8I	GTNNAC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 379
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	1 cut(s)	386
Kpn2I	TCCGGA	2 cut(s)	107, 226
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
LpnPI	CCDG	8 cut(s)	121, 240, 258, 273, 285, 342, 387, 396
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	51, 125
MbiI	CCGCTC	1 cut(s)	159
MboII	GAAGA	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	4 cut(s)	75, 113, 190, 333
Mox20I	TGGCCA	1 cut(s)	167
MroI	TCCGGA	2 cut(s)	107, 226
MroNI	GCCGGC	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	2 cut(s)	266, 378
MslI	CAYNNNNRTG	2 cut(s)	36, 304
Msp20I	TGGCCA	1 cut(s)	167
MspI	CCGG	4 cut(s)	108, 227, 260, 383
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	370, 379
NaeI	GCCGGC	1 cut(s)	384
NgoMIV	GCCGGC	1 cut(s)	382
NlaIII	CATG	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	60, 247
PinAI	ACCGGT	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	158, 363
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	2 cut(s)	36, 304
SaqAI	TTAA	2 cut(s)	266, 378
SatI	GCNGC	2 cut(s)	157, 362
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	3 cut(s)	79, 325, 331
SfaNI	GCATC	1 cut(s)	28
SmiMI	CAYNNNNRTG	2 cut(s)	36, 304
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	290
SsiI	CCGC	7 cut(s)	154, 157, 183, 242, 359, 362, 371
SspI	AATATT	1 cut(s)	114
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	192, 325
TasI	AATT	1 cut(s)	290
TauI	GCSGC	2 cut(s)	159, 364
TfiI	GAWTC	2 cut(s)	60, 247
Tru1I	TTAA	2 cut(s)	266, 378
Tru9I	TTAA	2 cut(s)	266, 378
TseFI	GTSAC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	2 cut(s)	248, 283
TspGWI	ACGGA	1 cut(s)	300
VneI	GTGCAC	1 cut(s)	315
XapI	RAATTY	1 cut(s)	290
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.