Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004182

Physical Location & Seq

Genomic Coordinates Reverse (-)

21874704 .. 21875836

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G210400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGAGCCAGGATTTTTCGCCACCCCACGTGGATGCATCTCGGCCGTCCTTGGGCTTCCCTCTTGGCACAGCACTCCTCTTGATCATCATCTTCAGCCTCAGCGGAATCTTCTCCTGCTGCTACCACTGGGACAAGCTCAGATCACTCCGTAGATCTTTCACCCAAGACGCAGACCCCGAGGCCGATGCTGAGCCACAATCACCCTCCAAATCTAAGCCTCCTCACATGGATTTAAAGCAGAAGCAGAGGCAGAGCTTGCCTGTGATAATGCCTGGGGATCAAATTCCAAAGTTTATGGCATTGCCATGCCCCCGAGAGCCTCCAAGAGAAGAGAAGATTGTTGTGAAGGTGCAAAAGCAGCCAAAGCCACCTCGCTTTCCTGTGCCTTTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.96

Weight (kDa)

9.1

Isoelectric Point (pI)

77.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65660
fragaria_vesca	FvH4_1g18910 FvH4_1g18910 FvH4_1g18910 FvH4_5g33800 FvH4_5g33800
malus_domestica	MD01G1045700.v1.1 MD08G1207400.v1.1 MD15G1306100.v1.1 MD15G1391900.v1.1
prunus_persica	Prupe.1G540600_v2.0.a1 Prupe.6G210400_v2.0.a1
pyrus_communis	pycom15g35270
rosa_chinensis	RchiOBHm_Chr2g0109921 RchiOBHm_Chr7g0233121
rosa_laevigata	RLG00000001295 RLG00000017769
rosa_multiflora	Rmu_sc0001362.1_g000012 Rmu_sc0005173.1_g000017
rosa_roxburghii	Rroxscaffold_2G00133880 Rroxscaffold_3G00227630
rosa_rugosa	Rorug02G0163800 Rorug07G0278400 Rorug07G0278500 Rorug07G0278600
rosa_samantha	Rh2BG225800 Rh2CG218000 Rh7AG434200 Rh7BG406700 Rh7CG453200 Rh7DG422500
rosa_wichuraiana	Rw2G016660 Rw7G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	79
AcvI	CACGTG	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	53
AjnI	CCWGG	2 cut(s)	9, 274
AluBI	AGCT	2 cut(s)	139, 258
AluI	AGCT	2 cut(s)	139, 258
AlwI	GGATC	1 cut(s)	288
Ama87I	CYCGRG	2 cut(s)	179, 315
AoxI	GGCC	2 cut(s)	44, 183
ApeKI	GCWGC	2 cut(s)	120, 361
ApoI	RAATTY	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	154, 195
AvaI	CYCGRG	2 cut(s)	179, 315
BbrPI	CACGTG	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	107, 373
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	2 cut(s)	11, 276
BclI	TGATCA	1 cut(s)	84
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	2 cut(s)	121, 362
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	2 cut(s)	122, 363
Bme1390I	CCNGG	2 cut(s)	11, 276
BmeT110I	CYCGRG	2 cut(s)	179, 315
BmrFI	CCNGG	2 cut(s)	11, 276
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	25, 47, 178
BmuI	ACTGGG	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	51, 180, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	11, 276
BseDI	CCNNGG	3 cut(s)	51, 180, 275
BseGI	GGATG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	3 cut(s)	115, 154, 183
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	68, 213
BseX3I	CGGCCG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	107, 373
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	46, 185
BsiEI	CGRYCG	1 cut(s)	47
BsiHKCI	CYCGRG	2 cut(s)	179, 315
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	46, 185
BsoBI	CYCGRG	2 cut(s)	179, 315
Bsp143I	GATC	4 cut(s)	84, 143, 155, 280
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	2 cut(s)	46, 185
BspCNI	CTCAG	3 cut(s)	114, 153, 184
BspPI	GGATC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	51, 180, 275
BssMI	GATC	4 cut(s)	84, 143, 155, 280
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	11, 276
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	4 cut(s)	101, 140, 192, 216
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	4 cut(s)	87, 146, 158, 283
BstMBI	GATC	4 cut(s)	84, 143, 155, 280
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	3 cut(s)	259, 361, 367
BstNI	CCWGG	2 cut(s)	11, 276
BstSCI	CCNGG	2 cut(s)	9, 274
BstV1I	GCAGC	2 cut(s)	107, 373
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BstZI	CGGCCG	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	46, 185
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	260
CseI	GACGC	1 cut(s)	179
CviAII	CATG	2 cut(s)	229, 309
DdeI	CTNAG	4 cut(s)	101, 140, 192, 216
DpnI	GATC	4 cut(s)	86, 145, 157, 282
DpnII	GATC	4 cut(s)	84, 143, 155, 280
DraI	TTTAAA	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	44
EagI	CGGCCG	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EclXI	CGGCCG	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	51
Eco52I	CGGCCG	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	79
Eco72I	CACGTG	1 cut(s)	31
Eco88I	CYCGRG	2 cut(s)	179, 315
EcoRII	CCWGG	2 cut(s)	9, 274
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	232, 312
FaiI	YATR	3 cut(s)	230, 299, 310
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	228, 308
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	121, 362
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	121, 362
GluI	GCNGC	2 cut(s)	121, 362
HaeIII	GGCC	2 cut(s)	46, 185
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	232, 312
HinfI	GANTC	1 cut(s)	108
HphI	GGTGA	2 cut(s)	154, 195
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	38, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	259, 361, 367
HpyF3I	CTNAG	4 cut(s)	101, 140, 192, 216
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	232, 312
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	84, 143, 155, 280
LpnPI	CCDG	6 cut(s)	23, 115, 130, 261, 276, 288
Lsp1109I	GCAGC	2 cut(s)	107, 373
LweI	GCATC	3 cut(s)	25, 47, 178
MaeII	ACGT	1 cut(s)	30
MalI	GATC	4 cut(s)	86, 145, 157, 282
MboI	GATC	4 cut(s)	84, 143, 155, 280
MboII	GAAGA	4 cut(s)	85, 103, 344, 349
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	40
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	2 cut(s)	33, 307
MspA1I	CMGCKG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	11, 276
MvaI	CCWGG	2 cut(s)	11, 276
MwoI	GCNNNNNNNGC	3 cut(s)	259, 361, 367
NdeII	GATC	4 cut(s)	84, 143, 155, 280
NlaIII	CATG	2 cut(s)	232, 312
NmeAIII	GCCGAG	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	122, 363
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	9, 274
PspCI	CACGTG	1 cut(s)	31
PspGI	CCWGG	2 cut(s)	9, 274
PsuI	RGATCY	1 cut(s)	155
RseI	CAYNNNNRTG	2 cut(s)	33, 307
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	2 cut(s)	121, 362
Sau3AI	GATC	4 cut(s)	84, 143, 155, 280
ScrFI	CCNGG	2 cut(s)	11, 276
SetI	ASST	5 cut(s)	33, 141, 260, 354, 376
SfaNI	GCATC	3 cut(s)	25, 47, 178
SmiMI	CAYNNNNRTG	2 cut(s)	33, 307
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	9, 274
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	33
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	134
TseI	GCWGC	2 cut(s)	120, 361
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.