Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004182

Physical Location & Seq

Genomic Coordinates Forward (+)

11208713 .. 11210174

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18910.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGAGCCAGAATCTTTCGCCGCCGCACGTGGATGCCTCTCGTCCGTCCTTGGGGTTCCCTCTCGGCACCGCGCTCCTCCTCATCATCATCTTCAGCTTGAGCGGCGTCTTCTCCTGCTGCTACCACTGGGATAAGCTCAGATCACTCCGCAGGTCGTTCGCCGAAGACTCCAACCCCGAAGCCTCTGACGACATCGAAGGCCAGCCTCCCTCCAAATCTAAACCCGCTCATCTGGACATGAAGCAGACCCAAAAGCAAAGCGTGCCGGTGATAATGCCCGGAGATCAGATTCCGAAGTTTATGGCATTGCCATGTCCATGTGAGCCGCCGAGGGAGGAGAAGATAGTTGTCAAAGTTCAAAAACCGCCCAAGCCACCTCGCTTTCCTGTACCTCTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.93

Weight (kDa)

8.38

Isoelectric Point (pI)

71.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65660
fragaria_vesca	FvH4_1g18910 FvH4_1g18910 FvH4_1g18910 FvH4_5g33800 FvH4_5g33800
malus_domestica	MD01G1045700.v1.1 MD08G1207400.v1.1 MD15G1306100.v1.1 MD15G1391900.v1.1
prunus_persica	Prupe.1G540600_v2.0.a1 Prupe.6G210400_v2.0.a1
pyrus_communis	pycom15g35270
rosa_chinensis	RchiOBHm_Chr2g0109921 RchiOBHm_Chr7g0233121
rosa_laevigata	RLG00000001295 RLG00000017769
rosa_multiflora	Rmu_sc0001362.1_g000012 Rmu_sc0005173.1_g000017
rosa_roxburghii	Rroxscaffold_2G00133880 Rroxscaffold_3G00227630
rosa_rugosa	Rorug02G0163800 Rorug07G0278400 Rorug07G0278500 Rorug07G0278600
rosa_samantha	Rh2BG225800 Rh2CG218000 Rh7AG434200 Rh7BG406700 Rh7CG453200 Rh7DG422500
rosa_wichuraiana	Rw2G016660 Rw7G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	2 cut(s)	105, 230
AccII	CGCG	1 cut(s)	74
AciI	CCGC	8 cut(s)	23, 26, 72, 105, 151, 228, 329, 368
AcuI	CTGAAG	1 cut(s)	79
AcvI	CACGTG	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	362
AluBI	AGCT	2 cut(s)	99, 139
AluI	AGCT	2 cut(s)	99, 139
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	68
BbrPI	CACGTG	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	103, 174
BbvI	GCAGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BcnI	CCSGG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	144
BisI	GCNGC	5 cut(s)	23, 26, 106, 121, 329
BlsI	GCNGC	5 cut(s)	24, 27, 107, 122, 330
Bme1390I	CCNGG	1 cut(s)	282
BmiI	GGNNCC	2 cut(s)	59, 70
BmrFI	CCNGG	1 cut(s)	282
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	2 cut(s)	103, 174
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	51, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	51, 332
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	154
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	3 cut(s)	68, 71, 353
BseXI	GCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	269, 282
BslI	CCNNNNNNNGG	1 cut(s)	53
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	143, 286
BspACI	CCGC	8 cut(s)	23, 26, 72, 105, 151, 228, 329, 368
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	59, 70
BspMI	ACCTGC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	2 cut(s)	105, 230
BsrDI	GCAATG	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	51, 332
BssMI	GATC	2 cut(s)	143, 286
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	206, 266
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	146, 289
BstMBI	GATC	2 cut(s)	143, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 265
BstSCI	CCNGG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	107
BstV2I	GAAGAC	2 cut(s)	103, 174
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	206, 266
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	268
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	3 cut(s)	241, 315, 321
CviJI	RGCY	8 cut(s)	9, 99, 139, 185, 204, 208, 328, 376
CviKI_1	RGCY	8 cut(s)	9, 99, 139, 185, 204, 208, 328, 376
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	2 cut(s)	145, 288
DpnII	GATC	2 cut(s)	143, 286
Eco130I	CCWWGG	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	79
Eco72I	CACGTG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	244, 318, 324
FaiI	YATR	4 cut(s)	242, 305, 316, 322
FatI	CATG	3 cut(s)	240, 314, 320
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	5 cut(s)	23, 26, 106, 121, 329
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	5 cut(s)	23, 26, 106, 121, 329
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	5 cut(s)	23, 26, 106, 121, 329
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	269, 282
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	244, 318, 324
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	3 cut(s)	13, 170, 292
HpaII	CCGG	2 cut(s)	269, 282
HphI	GGTGA	1 cut(s)	283
Hpy188I	TCNGA	4 cut(s)	143, 190, 291, 297
Hpy188III	TCNNGA	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 265
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	244, 318, 324
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	143, 286
LmnI	GCTCC	1 cut(s)	81
LpnPI	CCDG	8 cut(s)	23, 115, 130, 139, 218, 221, 282, 295
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	1 cut(s)	25
MaeII	ACGT	1 cut(s)	30
MalI	GATC	2 cut(s)	145, 288
MbiI	CCGCTC	2 cut(s)	105, 230
MboI	GATC	2 cut(s)	143, 286
MboII	GAAGA	4 cut(s)	85, 103, 179, 355
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	198
MslI	CAYNNNNRTG	3 cut(s)	33, 313, 319
MspI	CCGG	2 cut(s)	269, 282
MspR9I	CCNGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	105, 265
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	143, 286
NlaIII	CATG	3 cut(s)	244, 318, 324
NlaIV	GGNNCC	2 cut(s)	59, 70
NmeAIII	GCCGAG	2 cut(s)	45, 357
PfeI	GAWTC	2 cut(s)	13, 292
PkrI	GCNGC	5 cut(s)	24, 27, 107, 122, 330
PleI	GAGTC	1 cut(s)	164
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	59, 70
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	3 cut(s)	33, 313, 319
SatI	GCNGC	5 cut(s)	23, 26, 106, 121, 329
Sau3AI	GATC	2 cut(s)	143, 286
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	6 cut(s)	33, 101, 141, 158, 382, 397
SfaNI	GCATC	1 cut(s)	25
SmiMI	CAYNNNNRTG	3 cut(s)	33, 313, 319
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
SsiI	CCGC	8 cut(s)	23, 26, 72, 105, 151, 228, 329, 368
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	198
TauI	GCSGC	4 cut(s)	25, 28, 108, 331
TfiI	GAWTC	2 cut(s)	13, 292
TscAI	CASTG	1 cut(s)	134
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.