Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004182

Physical Location & Seq

Genomic Coordinates Reverse (-)

24513967 .. 24515149

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33800.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGAGGAGAATGGAGAACGATGAAATATCAACTCGGCCTTCTTTAGCTTTTCCTCTGGGTTTGGCTCTTGTTCTTCTCATGCTATTGAGCATCTGTGCCTTCTTCTTGTGCTGTATCTACTGGGACAGACTTCGATCTCTCTTCGTATCCTCTCTAGATCAAGAACACGACCTAGAAGCCGAGTCAGATCAGAAACCTGCACGTCCGAAAACGATGGAAAATCAAGATCACTTGCAGAGCTTGCCGGTATTGATGCCTGGAGATCAAGTTCCAAAGTTCATAGCAATTGCATGTCCCTGTGAACTTCCGGCGGTGGAGAAGAAGATTACGGTGATAGTAGACAAGCCTACTCGCGATCGTTTGTGTGATGCTAGTACTGTATATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.74

Weight (kDa)

4.97

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65660
fragaria_vesca	FvH4_1g18910 FvH4_1g18910 FvH4_1g18910 FvH4_5g33800 FvH4_5g33800
malus_domestica	MD01G1045700.v1.1 MD08G1207400.v1.1 MD15G1306100.v1.1 MD15G1391900.v1.1
prunus_persica	Prupe.1G540600_v2.0.a1 Prupe.6G210400_v2.0.a1
pyrus_communis	pycom15g35270
rosa_chinensis	RchiOBHm_Chr2g0109921 RchiOBHm_Chr7g0233121
rosa_laevigata	RLG00000001295 RLG00000017769
rosa_multiflora	Rmu_sc0001362.1_g000012 Rmu_sc0005173.1_g000017
rosa_roxburghii	Rroxscaffold_2G00133880 Rroxscaffold_3G00227630
rosa_rugosa	Rorug02G0163800 Rorug07G0278400 Rorug07G0278500 Rorug07G0278600
rosa_samantha	Rh2BG225800 Rh2CG218000 Rh7AG434200 Rh7BG406700 Rh7CG453200 Rh7DG422500
rosa_wichuraiana	Rw2G016660 Rw7G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	357
AciI	CCGC	1 cut(s)	314
AfaI	GTAC	1 cut(s)	379
AjiI	CACGTC	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	259
AloI	GAACNNNNNNTCC	2 cut(s)	255, 287
AluBI	AGCT	3 cut(s)	50, 243, 390
AluI	AGCT	3 cut(s)	50, 243, 390
AoxI	GGCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	346
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	160
BfaI	CTAG	4 cut(s)	158, 176, 375, 391
BfuAI	ACCTGC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	160
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	261
BmgBI	CACGTC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	3 cut(s)	102, 246, 361
BmuI	ACTGGG	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	357
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	248, 311
BslFI	GGGAC	2 cut(s)	140, 282
BsmFI	GGGAC	2 cut(s)	140, 282
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	6 cut(s)	137, 160, 190, 229, 265, 358
Bsp68I	TCGCGA	1 cut(s)	357
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	247
BssMI	GATC	6 cut(s)	137, 160, 190, 229, 265, 358
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	334, 382
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	245
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	6 cut(s)	140, 163, 193, 232, 268, 361
BstMBI	GATC	6 cut(s)	137, 160, 190, 229, 265, 358
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	259
BstUI	CGCG	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	206
BtuMI	TCGCGA	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	2 cut(s)	82, 294
CviJI	RGCY	7 cut(s)	40, 50, 68, 182, 243, 349, 390
CviKI_1	RGCY	7 cut(s)	40, 50, 68, 182, 243, 349, 390
CviQI	GTAC	1 cut(s)	378
DpnI	GATC	6 cut(s)	139, 162, 192, 231, 267, 360
DpnII	GATC	6 cut(s)	137, 160, 190, 229, 265, 358
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	85, 297
FaiI	YATR	5 cut(s)	83, 284, 295, 385, 387
FaqI	GGGAC	2 cut(s)	140, 282
FatI	CATG	2 cut(s)	81, 293
FblI	GTMKAC	1 cut(s)	342
FspBI	CTAG	4 cut(s)	158, 176, 375, 391
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	2 cut(s)	248, 311
Hin1II	CATG	2 cut(s)	85, 297
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	248, 311
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	305, 343
Hpy188I	TCNGA	3 cut(s)	190, 195, 210
Hpy188III	TCNNGA	4 cut(s)	158, 164, 227, 356
Hpy8I	GTNNAC	2 cut(s)	305, 343
HpyAV	CCTTC	2 cut(s)	51, 112
HpyCH4III	ACNGT	2 cut(s)	334, 382
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	203, 238, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	85, 297
Kzo9I	GATC	6 cut(s)	137, 160, 190, 229, 265, 358
LpnPI	CCDG	8 cut(s)	44, 109, 213, 246, 261, 273, 313, 324
LweI	GCATC	3 cut(s)	102, 246, 361
MaeI	CTAG	4 cut(s)	158, 176, 375, 391
MaeII	ACGT	1 cut(s)	205
MalI	GATC	6 cut(s)	139, 162, 192, 231, 267, 360
MboI	GATC	6 cut(s)	137, 160, 190, 229, 265, 358
MboII	GAAGA	5 cut(s)	68, 97, 136, 334, 337
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	2 cut(s)	66, 163
MspI	CCGG	2 cut(s)	248, 311
MspR9I	CCNGG	1 cut(s)	261
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeII	GATC	6 cut(s)	137, 160, 190, 229, 265, 358
NlaIII	CATG	2 cut(s)	85, 297
NmeAIII	GCCGAG	2 cut(s)	16, 208
NruI	TCGCGA	1 cut(s)	357
NspI	RCATGY	1 cut(s)	297
Ple19I	CGATCG	1 cut(s)	361
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PvuI	CGATCG	1 cut(s)	361
RruI	TCGCGA	1 cut(s)	357
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
Sau3AI	GATC	6 cut(s)	137, 160, 190, 229, 265, 358
ScaI	AGTACT	1 cut(s)	379
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	6 cut(s)	52, 177, 202, 208, 245, 392
SfaNI	GCATC	3 cut(s)	102, 246, 361
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	4 cut(s)	158, 176, 375, 391
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	334, 382
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	288
TatI	WGTACW	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	39, 271
XbaI	TCTAGA	1 cut(s)	157
XceI	RCATGY	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	4 cut(s)	158, 176, 375, 391
ZrmI	AGTACT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.