Rw7G035770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004182
Physical Location & Seq
Reverse (-)
53602652 .. 53603169
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G035770.1

Sequence Viewer

Length: 291 bp
ATGGAGAACGATGAAGTATCAACTCGGCCTTCTTTAGCTTTTCCTCTGGGTTTGGCTCTTCTTCTCCTCATGCTATTGAGCATCAGCACCTTCTTCTTCTGCTGCCTCTACTGGGATAGAATGGAAAATCAAAATCAACTACAGAGCTTGCCAGTACTGATGCCTGGAGATCAAGTGCCAAAGTTCATAGCAATTGCATGTCCCTGTGAACTTCCGGCGGTGGAGAAGAAGATCACGGTGATGGTAGAAGAGCCTACCCGTTTGTGTCATGCTAGTACTGTATGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

4.72

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 218
AfaI GTAC 2 cut(s) 156, 277
AfiI CCNNNNNNNGG 1 cut(s) 112
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 3 cut(s) 38, 147, 288
AluI AGCT 3 cut(s) 38, 147, 288
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 250
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 165
BfaI CTAG 2 cut(s) 273, 289
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
BmcAI AGTACT 2 cut(s) 156, 277
Bme1390I CCNGG 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 2 cut(s) 90, 150
BmuI ACTGGG 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 2 cut(s) 116, 152
BseBI CCWGG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 112
BseNI ACTGG 2 cut(s) 116, 152
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 169, 231
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 28
BspQI GCTCTTC 2 cut(s) 63, 243
BsrI ACTGG 2 cut(s) 116, 152
BssMI GATC 2 cut(s) 169, 231
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 238, 280
Bst6I CTCTTC 2 cut(s) 63, 243
BstC8I GCNNGC 1 cut(s) 149
BstKTI GATC 2 cut(s) 172, 234
BstMBI GATC 2 cut(s) 169, 231
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 149
Csp6I GTAC 2 cut(s) 155, 276
CviAII CATG 3 cut(s) 70, 198, 269
CviJI RGCY 6 cut(s) 28, 38, 56, 147, 253, 288
CviKI_1 RGCY 6 cut(s) 28, 38, 56, 147, 253, 288
CviQI GTAC 2 cut(s) 155, 276
DpnI GATC 2 cut(s) 171, 233
DpnII GATC 2 cut(s) 169, 231
Eam1104I CTCTTC 2 cut(s) 63, 243
EarI CTCTTC 2 cut(s) 63, 243
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 3 cut(s) 73, 201, 272
FaiI YATR 5 cut(s) 71, 188, 199, 270, 283
FaqI GGGAC 1 cut(s) 186
FatI CATG 3 cut(s) 69, 197, 268
Fnu4HI GCNGC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 103
FspBI CTAG 2 cut(s) 273, 289
GluI GCNGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 215
Hin1II CATG 3 cut(s) 73, 201, 272
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 39, 100
HpyCH4III ACNGT 2 cut(s) 238, 280
HpyCH4V TGCA 1 cut(s) 197
Hsp92II CATG 3 cut(s) 73, 201, 272
Kzo9I GATC 2 cut(s) 169, 231
LguI GCTCTTC 2 cut(s) 63, 243
LpnPI CCDG 7 cut(s) 32, 97, 150, 165, 177, 217, 228
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 2 cut(s) 90, 150
MaeI CTAG 2 cut(s) 273, 289
MalI GATC 2 cut(s) 171, 233
MboI GATC 2 cut(s) 169, 231
MboII GAAGA 7 cut(s) 50, 53, 85, 88, 238, 241, 260
MfeI CAATTG 1 cut(s) 192
MluCI AATT 1 cut(s) 192
MnlI CCTC 3 cut(s) 54, 77, 116
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 165
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 165
NdeII GATC 2 cut(s) 169, 231
NlaIII CATG 3 cut(s) 73, 201, 272
NmeAIII GCCGAG 1 cut(s) 4
NspI RCATGY 1 cut(s) 201
PciSI GCTCTTC 2 cut(s) 63, 243
PkrI GCNGC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
RsaI GTAC 2 cut(s) 156, 277
RsaNI GTAC 2 cut(s) 155, 276
RseI CAYNNNNRTG 1 cut(s) 239
SapI GCTCTTC 2 cut(s) 63, 243
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 2 cut(s) 169, 231
ScaI AGTACT 2 cut(s) 156, 277
ScrFI CCNGG 1 cut(s) 165
SetI ASST 4 cut(s) 40, 92, 149, 290
SfaNI GCATC 2 cut(s) 90, 150
SfcI CTRYAG 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 1 cut(s) 192
SsiI CCGC 1 cut(s) 218
SspMI CTAG 2 cut(s) 273, 289
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 238, 280
TasI AATT 1 cut(s) 192
TatI WGTACW 2 cut(s) 154, 275
TseI GCWGC 1 cut(s) 102
TspDTI ATGAA 2 cut(s) 27, 175
XceI RCATGY 1 cut(s) 201
XspI CTAG 2 cut(s) 273, 289
ZrmI AGTACT 2 cut(s) 156, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.