Rorug07G0278500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004182
Physical Location & Seq
Forward (+)
26719056 .. 26719948
893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0278500.1

Sequence Viewer

Length: 813 bp
ATGGATGGTATGGAGGAATTACTGGTTTCTGACTTGATCGACGCCGATACCAACGAGTGGTTTGTTGATTTTATGCTGGAGTTGTTTACGGAAGGAGAAGTGGAGAGAATGGCGTTTATCCCTCTTAGCATTTGCAGGGCTGAGGATAGGATCATCTGGTACTATGACAAAAGAGGACTGTACCAGGGTTACAGCAAGTATTGGACCATGGTGTGGGGTGCTGGAGTTCCTCCCAAGGTCAAGGCCTTTATCTGGCGCCTTCTGAGGGACATATTTCCAACAAAAGTAGCATTGTGGAGATGTAAAGTGGACATTGCCGACATGCAGTGCTTGTTTTGCATGGAGGACGTTGAGTCTGGTATGCATCTTTTTAAGAATTGTCCTGCTTTGTCTTGTTTCTGGTTGTTTGGGCCCCTCAAGTCTAGAGATCATCCAGCTTCGAGTCTTTGTGAGTGGGTTTTGGAGATGTTGGATAGCTTGAGTGGGGAGCAGAGAGACTTTTTCTTCATATGCCTGTGGGCCATCTGGGTAGAAAGGAATAATATGGTTTGGAAGAATGATGCTTTCCAGCCCATGAATATGATAAAGTGGACCTCCAGGTTTTTGGCAGATTATCAGAAGTTTCACACAAAGGCAGTCCGGAAGAAGGAGAGGCCGCTGACTAAGTGGCAGAACCCACCTCGGAGTCAGCTAAAAATCAATGTGGATGAAACCTTTAGGGTGGATATAGGTTGTGGAGGAATTGGAGTTGTGGTTACACTACTACAAAAATCGAATCAGACGATGCTATGCAATTATCTGTTGTGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

31.82

Weight (kDa)

5.76

Isoelectric Point (pI)

24.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 65 - 134 1.8e-14 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AccB7I CCANNNNNTGG 2 cut(s) 57, 213
AccIII TCCGGA 1 cut(s) 639
AciI CCGC 1 cut(s) 656
AclWI GGATC 1 cut(s) 158
AcyI GRCGYC 2 cut(s) 42, 256
AfaI GTAC 2 cut(s) 161, 182
AfiI CCNNNNNNNGG 5 cut(s) 57, 213, 252, 265, 646
AhdI GACNNNNNGTC 1 cut(s) 352
AjnI CCWGG 2 cut(s) 183, 596
AluBI AGCT 3 cut(s) 437, 477, 691
AluI AGCT 3 cut(s) 437, 477, 691
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 1 cut(s) 158
Aor13HI TCCGGA 1 cut(s) 639
AoxI GGCC 4 cut(s) 243, 410, 519, 653
ApaI GGGCCC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 5 cut(s) 204, 410, 411, 519, 591
AvaII GGWCC 2 cut(s) 204, 591
BaeGI GKGCMC 1 cut(s) 414
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 530
BciT130I CCWGG 2 cut(s) 185, 598
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 1 cut(s) 423
BfoI RGCGCY 1 cut(s) 259
BisI GCNGC 1 cut(s) 656
BlsI GCNGC 1 cut(s) 657
Bme1390I CCNGG 2 cut(s) 185, 598
Bme18I GGWCC 2 cut(s) 204, 591
BmeRI GACNNNNNGTC 1 cut(s) 352
BmgT120I GGNCC 5 cut(s) 204, 410, 411, 519, 591
BmiI GGNNCC 3 cut(s) 257, 412, 413
BmrFI CCNGG 2 cut(s) 185, 598
BmsI GCATC 3 cut(s) 373, 550, 774
BpmI CTGGAG 3 cut(s) 98, 243, 580
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 401, 499
BsaHI GRCGYC 2 cut(s) 42, 256
BsaJI CCNNGG 4 cut(s) 184, 207, 234, 680
BsaWI WCCGGW 1 cut(s) 639
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 213, 252, 265, 646
Bse1I ACTGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 312
BseAI TCCGGA 1 cut(s) 639
BseBI CCWGG 2 cut(s) 185, 598
BseDI CCNNGG 4 cut(s) 184, 207, 234, 680
BseGI GGATG 3 cut(s) 10, 430, 712
BseLI CCNNNNNNNGG 5 cut(s) 57, 213, 252, 265, 646
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 132, 254
BseNI ACTGG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 414
BshFI GGCC 4 cut(s) 245, 412, 521, 655
BshNI GGYRCC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 640
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 5 cut(s) 57, 213, 252, 265, 646
BsmAI GTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 4 cut(s) 245, 412, 521, 655
Bsp120I GGGCCC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 414
Bsp13I TCCGGA 1 cut(s) 639
Bsp143I GATC 3 cut(s) 36, 150, 427
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 1 cut(s) 656
BspANI GGCC 4 cut(s) 245, 412, 521, 655
BspCNI CTCAG 2 cut(s) 133, 255
BspEI TCCGGA 1 cut(s) 639
BspLI GGNNCC 3 cut(s) 257, 412, 413
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 4 cut(s) 184, 207, 234, 680
BssMI GATC 3 cut(s) 36, 150, 427
BssNI GRCGYC 2 cut(s) 42, 256
BssT1I CCWWGG 2 cut(s) 207, 234
Bst2UI CCWGG 2 cut(s) 185, 598
Bst4CI ACNGT 1 cut(s) 180
BstACI GRCGYC 2 cut(s) 42, 256
BstDEI CTNAG 4 cut(s) 125, 141, 263, 663
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 3 cut(s) 10, 430, 712
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 3 cut(s) 39, 153, 430
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 3 cut(s) 36, 150, 427
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 2 cut(s) 185, 598
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 183, 596
BstSLI GKGCMC 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 604
BsuRI GGCC 4 cut(s) 245, 412, 521, 655
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 3 cut(s) 10, 430, 712
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 332
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 5 cut(s) 204, 410, 411, 519, 591
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 160, 181
CviAII CATG 4 cut(s) 208, 322, 340, 574
CviJI RGCY 9 cut(s) 140, 245, 412, 437, 477, 521, 571, 655, 691
CviKI_1 RGCY 9 cut(s) 140, 245, 412, 437, 477, 521, 571, 655, 691
CviQI GTAC 2 cut(s) 160, 181
DdeI CTNAG 4 cut(s) 125, 141, 263, 663
DinI GGCGCC 1 cut(s) 257
DpnI GATC 3 cut(s) 38, 152, 429
DpnII GATC 3 cut(s) 36, 150, 427
DriI GACNNNNNGTC 1 cut(s) 352
Eam1105I GACNNNNNGTC 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 207, 234
Eco147I AGGCCT 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 2 cut(s) 204, 591
EcoO109I RGGNCCY 1 cut(s) 411
EcoRII CCWGG 2 cut(s) 183, 596
EcoT14I CCWWGG 2 cut(s) 207, 234
EcoT22I ATGCAT 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 414
EgeI GGCGCC 1 cut(s) 257
EheI GGCGCC 1 cut(s) 257
ErhI CCWWGG 2 cut(s) 207, 234
FaeI CATG 4 cut(s) 211, 325, 343, 577
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 207, 321, 339, 573
FauNDI CATATG 1 cut(s) 509
Fnu4HI GCNGC 1 cut(s) 656
FokI GGATG 3 cut(s) 17, 417, 719
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 1 cut(s) 656
FspBI CTAG 1 cut(s) 423
GlaI GCGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 656
GsuI CTGGAG 3 cut(s) 98, 243, 580
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 4 cut(s) 245, 412, 521, 655
HapII CCGG 1 cut(s) 640
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 258
Hin1I GRCGYC 2 cut(s) 42, 256
Hin1II CATG 4 cut(s) 211, 325, 343, 577
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 4 cut(s) 353, 442, 685, 775
HpaII CCGG 1 cut(s) 640
Hpy166II GTNNAC 3 cut(s) 87, 310, 591
Hpy188I TCNGA 5 cut(s) 31, 264, 618, 684, 780
Hpy188III TCNNGA 2 cut(s) 423, 640
Hpy8I GTNNAC 3 cut(s) 87, 310, 591
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 86, 269, 640
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 5 cut(s) 135, 325, 339, 364, 792
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 4 cut(s) 125, 141, 263, 663
HpySE526I ACGT 1 cut(s) 348
Hsp92I GRCGYC 2 cut(s) 42, 256
Hsp92II CATG 4 cut(s) 211, 325, 343, 577
HspAI GCGC 1 cut(s) 256
KasI GGCGCC 1 cut(s) 255
Kpn2I TCCGGA 1 cut(s) 639
Kzo9I GATC 3 cut(s) 36, 150, 427
LmnI GCTCC 1 cut(s) 487
LweI GCATC 3 cut(s) 373, 550, 774
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 188, 754
MalI GATC 3 cut(s) 38, 152, 429
MboI GATC 3 cut(s) 36, 150, 427
MboII GAAGA 3 cut(s) 496, 565, 655
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 4 cut(s) 17, 376, 741, 793
Mly113I GGCGCC 1 cut(s) 256
MlyI GAGTC 3 cut(s) 362, 451, 694
MmeI TCCRAC 2 cut(s) 302, 450
Mph1103I ATGCAT 1 cut(s) 366
MroI TCCGGA 1 cut(s) 639
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 658
MspI CCGG 1 cut(s) 640
MspR9I CCNGG 2 cut(s) 185, 598
MvaI CCWGG 2 cut(s) 185, 598
MwoI GCNNNNNNNGC 1 cut(s) 336
NarI GGCGCC 1 cut(s) 256
NcoI CCATGG 1 cut(s) 207
NdeI CATATG 1 cut(s) 509
NdeII GATC 3 cut(s) 36, 150, 427
NlaIII CATG 4 cut(s) 211, 325, 343, 577
NlaIV GGNNCC 3 cut(s) 257, 412, 413
NsiI ATGCAT 1 cut(s) 366
NspI RCATGY 1 cut(s) 325
PceI AGGCCT 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 779
PfeI GAWTC 1 cut(s) 775
PflMI CCANNNNNTGG 2 cut(s) 57, 213
PkrI GCNGC 1 cut(s) 657
PleI GAGTC 3 cut(s) 361, 450, 693
PluTI GGCGCC 1 cut(s) 259
PpsI GAGTC 3 cut(s) 361, 450, 693
Psp6I CCWGG 2 cut(s) 183, 596
PspGI CCWGG 2 cut(s) 183, 596
PspN4I GGNNCC 3 cut(s) 257, 412, 413
PspOMI GGGCCC 1 cut(s) 410
PspPI GGNCC 5 cut(s) 204, 410, 411, 519, 591
RsaI GTAC 2 cut(s) 161, 182
RsaNI GTAC 2 cut(s) 160, 181
RseI CAYNNNNRTG 1 cut(s) 578
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 1 cut(s) 656
Sau3AI GATC 3 cut(s) 36, 150, 427
Sau96I GGNCC 5 cut(s) 204, 410, 411, 519, 591
SchI GAGTC 3 cut(s) 362, 451, 694
ScrFI CCNGG 2 cut(s) 185, 598
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 3 cut(s) 373, 550, 774
SfoI GGCGCC 1 cut(s) 257
SinI GGWCC 2 cut(s) 204, 591
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 2 cut(s) 416, 478
SmoI CTYRAG 2 cut(s) 416, 478
Sse9I AATT 4 cut(s) 17, 376, 741, 793
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 1 cut(s) 656
SspDI GGCGCC 1 cut(s) 255
SspMI CTAG 1 cut(s) 423
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 183, 596
StyI CCWWGG 2 cut(s) 207, 234
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 1 cut(s) 351
TaqI TCGA 3 cut(s) 39, 440, 773
TasI AATT 4 cut(s) 17, 376, 741, 793
TauI GCSGC 1 cut(s) 658
TfiI GAWTC 1 cut(s) 775
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 332
TspDTI ATGAA 3 cut(s) 496, 590, 723
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 1 cut(s) 332
Van91I CCANNNNNTGG 2 cut(s) 57, 213
VpaK11BI GGWCC 2 cut(s) 204, 591
XbaI TCTAGA 1 cut(s) 422
XceI RCATGY 1 cut(s) 325
XspI CTAG 1 cut(s) 423
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.