Rorug07G0278600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004182
Physical Location & Seq
Reverse (-)
26776034 .. 26776555
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0278600.1

Sequence Viewer

Length: 522 bp
ATGATTTTCCATGAGGATGGTAAGTGCAAAGCTACACCACGCTCAACCTTGCAACAAGGAGCTTTGCAAAAAGAAAATAGATTGGAGCTCCCAAATCCGTTCCAAAATGTGATCAGTGGGGGTTATGCAGCAAGAGGTTTTAGCTTTCAAGGGGATCGACCTTCCCCTTCAATCCCTCGAACCTTTTTTGGAGTCAAGGAGATATCAAAGCCACGTAAACCGGTGGTTCTGCGAAAGGAAGCTGTGAAAATTTTGGGCAATAAAGGTGGTGCAAGAGTGTTAGCACCGATTGATACTAATGGTGAACAGGAGACTATCGATACTAATGTTGAACATGAGACTGTTGGGGAGCTAGCAAACTCTGAGGACATAAGGGCGGCACCAGTTTTGGGGGTGGTAACTGTTGCTAGCCAAGAACAGGAGAAAAAGCCTGAACTTGCATCGGGGCAGGTCGAGAAAGCAACTATTAATGTACCTAGTGAGGGTAATGAAACTGTGATGCAGGAAGTAGTAGCGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.7

Weight (kDa)

5.56

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AccB1I GGYRCC 1 cut(s) 379
AciI CCGC 2 cut(s) 377, 515
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 1 cut(s) 249
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 3 cut(s) 389, 418, 482
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 3 cut(s) 149, 171, 332
AluBI AGCT 6 cut(s) 32, 62, 88, 144, 242, 352
AluI AGCT 6 cut(s) 32, 62, 88, 144, 242, 352
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 305, 332
AlwI GGATC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 249
AseI ATTAAT 1 cut(s) 468
AsiGI ACCGGT 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 314
AsuNHI GCTAGC 2 cut(s) 352, 407
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BanI GGYRCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 11
BclI TGATCA 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 305, 332
BfaI CTAG 4 cut(s) 353, 408, 477, 520
BfuAI ACCTGC 1 cut(s) 439
BisI GCNGC 2 cut(s) 129, 378
BlsI GCNGC 2 cut(s) 130, 379
BmiI GGNNCC 1 cut(s) 381
BmsI GCATC 2 cut(s) 449, 489
BmtI GCTAGC 2 cut(s) 356, 411
Bsa29I ATCGAT 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 3 cut(s) 389, 418, 482
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 318
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 3 cut(s) 389, 418, 482
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 379
BshTI ACCGGT 1 cut(s) 220
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 389, 418, 482
BsmAI GTCTC 2 cut(s) 305, 332
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 111, 154
BspACI CCGC 2 cut(s) 377, 515
BspCNI CTCAG 1 cut(s) 355
BspDI ATCGAT 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 381
BspMI ACCTGC 1 cut(s) 439
BspOI GCTAGC 2 cut(s) 356, 411
BspPI GGATC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 220
BssMI GATC 2 cut(s) 111, 154
Bst4CI ACNGT 3 cut(s) 343, 403, 496
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 354, 409
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 2 cut(s) 114, 157
BstMAI GTCTC 2 cut(s) 305, 332
BstMBI GATC 2 cut(s) 111, 154
BstV1I GCAGC 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 318
BsuTUI ATCGAT 1 cut(s) 318
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 354, 409
Cfr10I RCCGGY 1 cut(s) 220
ClaI ATCGAT 1 cut(s) 318
Csp6I GTAC 1 cut(s) 473
CspAI ACCGGT 1 cut(s) 220
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 2 cut(s) 11, 335
CviJI RGCY 9 cut(s) 32, 62, 88, 144, 211, 242, 352, 411, 430
CviKI_1 RGCY 9 cut(s) 32, 62, 88, 144, 211, 242, 352, 411, 430
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 1 cut(s) 363
DpnI GATC 2 cut(s) 113, 156
DpnII GATC 2 cut(s) 111, 154
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 90
Eco32I GATATC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoRV GATATC 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 2 cut(s) 14, 338
FaiI YATR 4 cut(s) 12, 126, 336, 371
FatI CATG 2 cut(s) 10, 334
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 129, 378
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 2 cut(s) 129, 378
FspBI CTAG 4 cut(s) 353, 408, 477, 520
GluI GCNGC 2 cut(s) 129, 378
HapII CCGG 1 cut(s) 221
Hin1II CATG 2 cut(s) 14, 338
HinfI GANTC 1 cut(s) 192
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 218, 305
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 2 cut(s) 218, 305
HpyAV CCTTC 2 cut(s) 171, 177
HpyCH4III ACNGT 3 cut(s) 343, 403, 496
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 7 cut(s) 27, 52, 67, 128, 272, 440, 502
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 2 cut(s) 14, 338
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 2 cut(s) 111, 154
LmnI GCTCC 4 cut(s) 59, 85, 93, 349
LpnPI CCDG 7 cut(s) 234, 293, 396, 404, 434, 444, 488
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 449, 489
MaeI CTAG 4 cut(s) 353, 408, 477, 520
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 397
MalI GATC 2 cut(s) 113, 156
MboI GATC 2 cut(s) 111, 154
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 1 cut(s) 249
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 5 cut(s) 7, 128, 186, 358, 475
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 221
NdeII GATC 2 cut(s) 111, 154
NheI GCTAGC 2 cut(s) 352, 407
NlaIII CATG 2 cut(s) 14, 338
NlaIV GGNNCC 1 cut(s) 381
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 2 cut(s) 130, 379
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
Ppu21I YACGTR 1 cut(s) 215
PshBI ATTAAT 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 381
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 2 cut(s) 129, 378
Sau3AI GATC 2 cut(s) 111, 154
SchI GAGTC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 2 cut(s) 449, 489
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 249
SsiI CCGC 2 cut(s) 377, 515
SspMI CTAG 4 cut(s) 353, 408, 477, 520
SstI GAGCTC 1 cut(s) 90
TaaI ACNGT 3 cut(s) 343, 403, 496
TaiI ACGT 1 cut(s) 217
TaqI TCGA 4 cut(s) 157, 178, 318, 453
TasI AATT 1 cut(s) 249
TauI GCSGC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 1 cut(s) 121
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 504
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 121
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 1 cut(s) 249
XspI CTAG 4 cut(s) 353, 408, 477, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.