Prupe.1G540600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004182
Physical Location & Seq
Forward (+)
44169285 .. 44170839
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G540600.1

Sequence Viewer

Length: 378 bp
ATGGAGAATTATGAAGTTTCAACTCGGCCTAATCTAGCTTTTCCTGTTGGCTTGGCTCTTCTTCTGTTCCTCTTGCTTAGCATCAGTGCCTTCTTCTTGTGTTGCCTCCATTGGGACAGGATTCGAGCTCTCATTTTTTCCTCTGTGGAAGACAACCCTGCAGATCAACTTCAACCAGAGTTGGATCAGAAACCTGCACTTCCTAACATGATGGCAAAGAAAAATCAGCAACAGAGCCTGCCAGTGCTGATGCCAGGAGATCAGGTGCCAAAGTTCATAGCAGTTGCTTGTCCATGCGAGCCTCCAGTTAGGGAGAAGCTCACTGTGATTGTTCAGAAGCCTGCCTATTTCTGTGATGCCGCTACTGTATATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.01

Weight (kDa)

5.26

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 265
AciI CCGC 1 cut(s) 360
AclWI GGATC 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 21, 173
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 3 cut(s) 38, 128, 319
AluI AGCT 3 cut(s) 38, 128, 319
Alw21I GWGCWC 1 cut(s) 130
AlwI GGATC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 238
AoxI GGCC 1 cut(s) 26
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 130
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 255
BfaI CTAG 2 cut(s) 35, 376
BfmI CTRYAG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 1 cut(s) 360
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 3 cut(s) 90, 240, 346
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 2 cut(s) 242, 305
BseBI CCWGG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 112
BseNI ACTGG 2 cut(s) 242, 305
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 130
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 3 cut(s) 163, 184, 259
Bsp1720I GCTNAGC 1 cut(s) 77
BspACI CCGC 1 cut(s) 360
BspANI GGCC 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 265
BsrI ACTGG 2 cut(s) 242, 305
BssMI GATC 3 cut(s) 163, 184, 259
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 325, 367
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 239, 299, 342
BstDEI CTNAG 1 cut(s) 77
BstKTI GATC 3 cut(s) 166, 187, 262
BstMBI GATC 3 cut(s) 163, 184, 259
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 28
BtsIMutI CAGTG 3 cut(s) 91, 249, 321
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 3 cut(s) 239, 299, 342
CaiI CAGNNNCTG 1 cut(s) 238
CviAII CATG 2 cut(s) 208, 294
CviJI RGCY 9 cut(s) 28, 38, 51, 56, 128, 237, 301, 319, 340
CviKI_1 RGCY 9 cut(s) 28, 38, 51, 56, 128, 237, 301, 319, 340
DdeI CTNAG 1 cut(s) 77
DpnI GATC 3 cut(s) 165, 186, 261
DpnII GATC 3 cut(s) 163, 184, 259
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 2 cut(s) 211, 297
FaiI YATR 6 cut(s) 12, 209, 278, 295, 370, 372
FaqI GGGAC 1 cut(s) 128
FatI CATG 2 cut(s) 207, 293
Fnu4HI GCNGC 1 cut(s) 360
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 2 cut(s) 35, 376
GluI GCNGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 2 cut(s) 211, 297
HinfI GANTC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 189, 336
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 325, 367
HpyCH4V TGCA 2 cut(s) 161, 197
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 2 cut(s) 211, 297
Kzo9I GATC 3 cut(s) 163, 184, 259
LguI GCTCTTC 1 cut(s) 63
LweI GCATC 3 cut(s) 90, 240, 346
MaeI CTAG 2 cut(s) 35, 376
MalI GATC 3 cut(s) 165, 186, 261
MboI GATC 3 cut(s) 163, 184, 259
MboII GAAGA 4 cut(s) 50, 53, 85, 161
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 4 cut(s) 80, 116, 151, 312
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
NdeII GATC 3 cut(s) 163, 184, 259
NlaIII CATG 2 cut(s) 211, 297
NlaIV GGNNCC 1 cut(s) 267
NmeAIII GCCGAG 1 cut(s) 4
PciSI GCTCTTC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 361
Psp124BI GAGCTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 267
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 238
SacI GAGCTC 1 cut(s) 130
SapI GCTCTTC 1 cut(s) 63
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 3 cut(s) 163, 184, 259
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 130
SetI ASST 5 cut(s) 40, 130, 196, 267, 321
SfaNI GCATC 3 cut(s) 90, 240, 346
SfcI CTRYAG 1 cut(s) 159
Sse9I AATT 1 cut(s) 7
SsiI CCGC 1 cut(s) 360
SspMI CTAG 2 cut(s) 35, 376
SstI GAGCTC 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 325, 367
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 7
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 121
TscAI CASTG 3 cut(s) 91, 249, 328
TspDTI ATGAA 2 cut(s) 27, 265
TspRI CASTG 3 cut(s) 91, 249, 328
XspI CTAG 2 cut(s) 35, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.