Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004182

Physical Location & Seq

Genomic Coordinates Forward (+)

26686232 .. 26687459

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAGGCCCTCTGGACACCTAAGAAACGATTTGGCGAGACACCTAGGATTATGGCGGTGGCGCTTGATGGAAGGCATGGGGTATTCCGCCCCTCTATATGGAGAAGGAGACTGGAGGCCGAATCAGGAATGCAGTCTGGCAATAGATTACCCGGCCAGAATAAGGGTTCTTGTTTCGAGCTCGACTATCATAAGCTGCCTAATTTCTGTGCCTACTATGGCACGCTCCACCATGACTCAAATGGATGTGAACTGTACAAGACGGGTGTGATCGTTGAGAAACAGAATGACTTATTGCTTTGTGAGGAGAAGAAGGACCGGTGGCTACTAGAGAAAGAAACAGGAGAGAGGGAGGCGGCGGTGGAGAATTTGGTCTGGAATGGGAGGAGGTTTGGGTTGCTGGACAGAGGGAAGGGCAGTTGGTCTATTCAGGCTCTGGAGCTCCCACTCTTAGGGATGTTCCGCAGCAGGGATGAGCAGGAGGGAAAGATCTGGGTGGAAAAAGGTGGGGATGGGATAGAGGTTGATAGCTCGTCTCTGAAAATGGAACTGGATGGGGGAAATTTCAGTAAGCGATGGCGGTTGACGGTGGATGGGAAGATGGATCCCAGTTTGGTAGGTCATCTCTCATCGGAATCTGGCATTGATAGAGCCCCTGATTTAATGGAGGAATTGATGCGAGACGAGTCTCCTTCAGGTAAGCAGAAGTTGATCTCGCTGGAGAAGAATGAGGAGAGTATTGATTGTCCCAAGATTGTTGGAAGTGAACTTGTTTTGCCGCCATCAGGGGATTTGAATTCAAAGGTTGAGACTGTGTTAAATAAGGTGGAGTTAATGGGGGTTGGGACAGCTGGAGCATGTATTAGCGACATTATCGCACCCGAGTCGAAAGAGGGTGGCCTGGATGGGTCTATTGCTTTGGAAGTTGGGTTGAATGAGGAAGGGGAGGGGCCTGATGACATTGGGGGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

35.79

Weight (kDa)

5.07

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65660
fragaria_vesca	FvH4_1g18910 FvH4_1g18910 FvH4_1g18910 FvH4_5g33800 FvH4_5g33800
malus_domestica	MD01G1045700.v1.1 MD08G1207400.v1.1 MD15G1306100.v1.1 MD15G1391900.v1.1
prunus_persica	Prupe.1G540600_v2.0.a1 Prupe.6G210400_v2.0.a1
pyrus_communis	pycom15g35270
rosa_chinensis	RchiOBHm_Chr2g0109921 RchiOBHm_Chr7g0233121
rosa_laevigata	RLG00000001295 RLG00000017769
rosa_multiflora	Rmu_sc0001362.1_g000012 Rmu_sc0005173.1_g000017
rosa_roxburghii	Rroxscaffold_2G00133880 Rroxscaffold_3G00227630
rosa_rugosa	Rorug02G0163800 Rorug07G0278400 Rorug07G0278500 Rorug07G0278600
rosa_samantha	Rh2BG225800 Rh2CG218000 Rh7AG434200 Rh7BG406700 Rh7CG453200 Rh7DG422500
rosa_wichuraiana	Rw2G016660 Rw7G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	960
AciI	CCGC	7 cut(s)	56, 88, 356, 359, 463, 580, 779
AclWI	GGATC	2 cut(s)	599, 612
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	3 cut(s)	367, 562, 796
AcuI	CTGAAG	1 cut(s)	678
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	5 cut(s)	99, 163, 452, 469, 785
AgeI	ACCGGT	1 cut(s)	318
AgsI	TTSAA	3 cut(s)	796, 801, 934
AjnI	CCWGG	1 cut(s)	900
AluBI	AGCT	5 cut(s)	181, 196, 442, 531, 851
AluI	AGCT	5 cut(s)	181, 196, 442, 531, 851
Alw21I	GWGCWC	2 cut(s)	183, 444
Alw26I	GTCTC	6 cut(s)	32, 103, 540, 675, 693, 803
AlwI	GGATC	2 cut(s)	599, 612
AlwNI	CAGNNNCTG	1 cut(s)	436
Ama87I	CYCGRG	1 cut(s)	881
AoxI	GGCC	5 cut(s)	6, 117, 154, 898, 950
ApeKI	GCWGC	2 cut(s)	196, 465
ApoI	RAATTY	3 cut(s)	367, 562, 796
AsiGI	ACCGGT	1 cut(s)	318
AspA2I	CCTAGG	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	3 cut(s)	7, 316, 950
AsuC2I	CCSGG	1 cut(s)	153
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	1 cut(s)	316
AvrII	CCTAGG	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	604
BanII	GRGCYC	3 cut(s)	183, 444, 655
Bbv12I	GWGCWC	2 cut(s)	183, 444
BbvI	GCAGC	2 cut(s)	183, 477
BccI	CCATC	8 cut(s)	62, 506, 548, 570, 587, 595, 790, 899
BcgI	CGANNNNNNTGC	2 cut(s)	867, 901
BciT130I	CCWGG	1 cut(s)	902
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	6 cut(s)	32, 103, 540, 675, 693, 803
BfaI	CTAG	2 cut(s)	45, 329
BfoI	RGCGCY	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	960
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	4 cut(s)	197, 357, 466, 779
BlnI	CCTAGG	1 cut(s)	44
BlsI	GCNGC	4 cut(s)	198, 358, 467, 780
Bme1390I	CCNGG	2 cut(s)	153, 902
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	3 cut(s)	7, 316, 950
BmiI	GGNNCC	2 cut(s)	606, 951
BmrFI	CCNGG	2 cut(s)	153, 902
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	1 cut(s)	666
BmuI	ACTGGG	1 cut(s)	603
BpmI	CTGGAG	4 cut(s)	134, 458, 740, 873
BpuMI	CCSGG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	5 cut(s)	99, 163, 452, 469, 785
Bse118I	RCCGGY	1 cut(s)	318
Bse1I	ACTGG	3 cut(s)	117, 555, 609
BseBI	CCWGG	1 cut(s)	902
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	7 cut(s)	251, 462, 478, 517, 559, 598, 910
BseLI	CCNNNNNNNGG	5 cut(s)	99, 163, 452, 469, 785
BseNI	ACTGG	3 cut(s)	117, 555, 609
BseRI	GAGGAG	3 cut(s)	320, 400, 746
BseXI	GCAGC	2 cut(s)	183, 477
BshFI	GGCC	5 cut(s)	8, 119, 156, 900, 952
BshTI	ACCGGT	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	183, 444
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	2 cut(s)	153, 319
BslFI	GGGAC	2 cut(s)	732, 859
BslI	CCNNNNNNNGG	5 cut(s)	99, 163, 452, 469, 785
BsmAI	GTCTC	6 cut(s)	32, 103, 540, 675, 693, 803
BsmBI	CGTCTC	2 cut(s)	540, 675
BsmFI	GGGAC	2 cut(s)	732, 859
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	5 cut(s)	8, 119, 156, 900, 952
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	3 cut(s)	183, 444, 655
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	270, 489, 604, 711
BspACI	CCGC	7 cut(s)	56, 88, 356, 359, 463, 580, 779
BspANI	GGCC	5 cut(s)	8, 119, 156, 900, 952
BspLI	GGNNCC	2 cut(s)	606, 951
BspMI	ACCTGC	1 cut(s)	960
BspPI	GGATC	2 cut(s)	599, 612
BsrFI	RCCGGY	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	117, 555, 609
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	4 cut(s)	270, 489, 604, 711
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	902
Bst4CI	ACNGT	3 cut(s)	255, 589, 814
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	21, 451
BstF5I	GGATG	7 cut(s)	251, 462, 478, 517, 559, 598, 910
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	4 cut(s)	273, 492, 607, 714
BstMAI	GTCTC	6 cut(s)	32, 103, 540, 675, 693, 803
BstMBI	GATC	4 cut(s)	270, 489, 604, 711
BstNI	CCWGG	1 cut(s)	902
BstNSI	RCATGY	1 cut(s)	861
BstSCI	CCNGG	2 cut(s)	151, 900
BstV1I	GCAGC	2 cut(s)	183, 477
BstX2I	RGATCY	2 cut(s)	489, 604
BstYI	RGATCY	2 cut(s)	489, 604
BsuRI	GGCC	5 cut(s)	8, 119, 156, 900, 952
BtgZI	GCGATG	1 cut(s)	589
BtsCI	GGATG	7 cut(s)	251, 462, 478, 517, 559, 598, 910
BveI	ACCTGC	1 cut(s)	960
Cac8I	GCNNGC	1 cut(s)	224
CaiI	CAGNNNCTG	1 cut(s)	436
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	318
Cfr13I	GGNCC	3 cut(s)	7, 316, 950
Csp6I	GTAC	1 cut(s)	256
CspAI	ACCGGT	1 cut(s)	318
CviAII	CATG	3 cut(s)	77, 233, 858
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	21, 451
DpnI	GATC	4 cut(s)	272, 491, 606, 713
DpnII	GATC	4 cut(s)	270, 489, 604, 711
EaeI	YGGCCR	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	77
Ecl136II	GAGCTC	2 cut(s)	181, 442
Eco130I	CCWWGG	1 cut(s)	44
Eco24I	GRGCYC	3 cut(s)	183, 444, 655
Eco47I	GGWCC	1 cut(s)	316
Eco53kI	GAGCTC	2 cut(s)	181, 442
Eco57I	CTGAAG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	881
EcoICRI	GAGCTC	2 cut(s)	181, 442
EcoO109I	RGGNCCY	2 cut(s)	7, 950
EcoRI	GAATTC	1 cut(s)	796
EcoRII	CCWGG	1 cut(s)	900
EcoT14I	CCWWGG	1 cut(s)	44
EcoT38I	GRGCYC	3 cut(s)	183, 444, 655
ErhI	CCWWGG	1 cut(s)	44
Esp3I	CGTCTC	2 cut(s)	540, 675
FaeI	CATG	3 cut(s)	80, 236, 861
FaiI	YATR	8 cut(s)	53, 78, 98, 100, 192, 219, 234, 859
FaqI	GGGAC	2 cut(s)	732, 859
FatI	CATG	3 cut(s)	76, 232, 857
Fnu4HI	GCNGC	4 cut(s)	197, 357, 466, 779
FokI	GGATG	7 cut(s)	258, 469, 485, 524, 566, 605, 917
FriOI	GRGCYC	3 cut(s)	183, 444, 655
Fsp4HI	GCNGC	4 cut(s)	197, 357, 466, 779
FspBI	CTAG	2 cut(s)	45, 329
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	4 cut(s)	197, 357, 466, 779
GsuI	CTGGAG	4 cut(s)	134, 458, 740, 873
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	5 cut(s)	8, 119, 156, 900, 952
HapII	CCGG	2 cut(s)	153, 319
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	80, 236, 861
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	5 cut(s)	122, 236, 635, 686, 884
HpaII	CCGG	2 cut(s)	153, 319
Hpy166II	GTNNAC	3 cut(s)	251, 585, 767
Hpy188I	TCNGA	2 cut(s)	540, 634
Hpy188III	TCNNGA	4 cut(s)	13, 126, 376, 437
Hpy8I	GTNNAC	3 cut(s)	251, 585, 767
HpyAV	CCTTC	6 cut(s)	66, 99, 307, 406, 702, 935
HpyCH4III	ACNGT	3 cut(s)	255, 589, 814
HpyCH4V	TGCA	1 cut(s)	133
HpyF3I	CTNAG	2 cut(s)	21, 451
Hsp92II	CATG	3 cut(s)	80, 236, 861
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	4 cut(s)	270, 489, 604, 711
LmnI	GCTCC	4 cut(s)	231, 439, 447, 854
Lsp1109I	GCAGC	2 cut(s)	183, 477
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	2 cut(s)	45, 329
MalI	GATC	4 cut(s)	272, 491, 606, 713
MboI	GATC	4 cut(s)	270, 489, 604, 711
MboII	GAAGA	3 cut(s)	322, 610, 736
MflI	RGATCY	2 cut(s)	489, 604
MhlI	GDGCHC	3 cut(s)	183, 444, 655
MluCI	AATT	5 cut(s)	202, 367, 562, 671, 796
MlyI	GAGTC	3 cut(s)	230, 695, 893
MmeI	TCCRAC	1 cut(s)	739
MseI	TTAA	3 cut(s)	662, 818, 833
MspA1I	CMGCKG	1 cut(s)	851
MspI	CCGG	2 cut(s)	153, 319
MspR9I	CCNGG	2 cut(s)	153, 902
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	902
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	4 cut(s)	270, 489, 604, 711
NlaIII	CATG	3 cut(s)	80, 236, 861
NlaIV	GGNNCC	2 cut(s)	606, 951
NspI	RCATGY	1 cut(s)	861
PctI	GAATGC	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	122, 635
PinAI	ACCGGT	1 cut(s)	318
PkrI	GCNGC	4 cut(s)	198, 358, 467, 780
PleI	GAGTC	3 cut(s)	230, 694, 892
PpsI	GAGTC	3 cut(s)	230, 694, 892
Psp124BI	GAGCTC	2 cut(s)	183, 444
Psp6I	CCWGG	1 cut(s)	900
PspGI	CCWGG	1 cut(s)	900
PspN4I	GGNNCC	2 cut(s)	606, 951
PspPI	GGNCC	3 cut(s)	7, 316, 950
PstNI	CAGNNNCTG	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	489, 604
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SacI	GAGCTC	2 cut(s)	183, 444
SaqAI	TTAA	3 cut(s)	662, 818, 833
SatI	GCNGC	4 cut(s)	197, 357, 466, 779
Sau3AI	GATC	4 cut(s)	270, 489, 604, 711
Sau96I	GGNCC	3 cut(s)	7, 316, 950
SchI	GAGTC	3 cut(s)	230, 695, 893
ScrFI	CCNGG	2 cut(s)	153, 902
SduI	GDGCHC	3 cut(s)	183, 444, 655
SfaNI	GCATC	1 cut(s)	666
SinI	GGWCC	1 cut(s)	316
Sse9I	AATT	5 cut(s)	202, 367, 562, 671, 796
SsiI	CCGC	7 cut(s)	56, 88, 356, 359, 463, 580, 779
SspMI	CTAG	2 cut(s)	45, 329
SstI	GAGCTC	2 cut(s)	183, 444
StyD4I	CCNGG	2 cut(s)	151, 900
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	3 cut(s)	255, 589, 814
TaqI	TCGA	3 cut(s)	177, 183, 887
TasI	AATT	5 cut(s)	202, 367, 562, 671, 796
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	2 cut(s)	359, 781
TfiI	GAWTC	2 cut(s)	122, 635
Tru1I	TTAA	3 cut(s)	662, 818, 833
Tru9I	TTAA	3 cut(s)	662, 818, 833
TseI	GCWGC	2 cut(s)	196, 465
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	3 cut(s)	367, 562, 796
XceI	RCATGY	1 cut(s)	861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmaJI	CCTAGG	1 cut(s)	44
XspI	CTAG	2 cut(s)	45, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.