Rmu_sc0005173.1_g000017

At5g65660-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005173.1
OG0004182
Physical Location & Seq
Forward (+)
74175 .. 74673
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005173.1_g000017.1.cds

Sequence Viewer

Length: 405 bp
atggagagccaggatctttcgccgccgcacgtggacgcgtctcggccgtccttggggttccctctcggcaccgcgcttctcctcatcatcatcttcagcttgagcggtgtcttctcctgctgctaccactgggacaagctcaggtcactccgcaggtctttctccgaaaactccactcccgaaacctccgacgacatcgaaggccaatctccctccaaatctaaacccgcccatctggacttgaagcagaatcaaaatcaaagcgtgccggtgataatgcccggcgatcagattccgaagtttatggcattgccgtgtcctcgtgagcctccgagagaagagaagatagttgtcaaagttcaaaaaccgcccaagccacctcgatttcctgtacctctgtattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.99

Weight (kDa)

8.49

Isoelectric Point (pI)

72.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 68
AccBSI CCGCTC 1 cut(s) 105
AccII CGCG 2 cut(s) 38, 74
AciI CCGC 7 cut(s) 23, 26, 72, 105, 151, 228, 368
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 79
AcvI CACGTG 1 cut(s) 31
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 2 cut(s) 244, 362
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 2 cut(s) 99, 139
AluI AGCT 2 cut(s) 99, 139
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 21
AoxI GGCC 2 cut(s) 44, 202
ApeKI GCWGC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 283
BanI GGYRCC 1 cut(s) 68
BauI CACGAG 1 cut(s) 321
BbrPI CACGTG 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 240
BceAI ACGGC 2 cut(s) 31, 298
BciT130I CCWGG 1 cut(s) 11
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 144
BisI GCNGC 3 cut(s) 23, 26, 121
BlsI GCNGC 3 cut(s) 24, 27, 122
Bme1390I CCNGG 2 cut(s) 11, 282
BmiI GGNNCC 2 cut(s) 59, 70
BmrFI CCNGG 2 cut(s) 11, 282
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 71
BseX3I CGGCCG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 107
Bsh1236I CGCG 2 cut(s) 38, 74
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 46, 204
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 269, 282
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 2 cut(s) 46, 204
Bsp143I GATC 2 cut(s) 13, 286
BspACI CCGC 7 cut(s) 23, 26, 72, 105, 151, 228, 368
BspANI GGCC 2 cut(s) 46, 204
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 2 cut(s) 38, 74
BspLI GGNNCC 2 cut(s) 59, 70
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 13, 286
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 140
BstFNI CGCG 2 cut(s) 38, 74
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 16, 289
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 13, 286
BstMCI CGRYCG 1 cut(s) 47
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 2 cut(s) 9, 280
BstUI CGCG 2 cut(s) 38, 74
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BstZI CGGCCG 1 cut(s) 44
BsuRI GGCC 2 cut(s) 46, 204
BtsIMutI CAGTG 1 cut(s) 127
BveI ACCTGC 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 268
CseI GACGC 2 cut(s) 27, 44
Csp6I GTAC 1 cut(s) 392
CviJI RGCY 7 cut(s) 9, 46, 99, 139, 204, 328, 376
CviKI_1 RGCY 7 cut(s) 9, 46, 99, 139, 204, 328, 376
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 15, 288
DpnII GATC 2 cut(s) 13, 286
EaeI YGGCCR 1 cut(s) 44
EagI CGGCCG 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EclXI CGGCCG 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 51
Eco52I CGGCCG 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 79
Eco72I CACGTG 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 45
FaiI YATR 1 cut(s) 305
FaqI GGGAC 1 cut(s) 146
FauI CCCGC 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 23, 26, 121
Fsp4HI GCNGC 3 cut(s) 23, 26, 121
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 23, 26, 121
HaeIII GGCC 2 cut(s) 46, 204
HapII CCGG 2 cut(s) 269, 282
HgaI GACGC 2 cut(s) 27, 44
HhaI GCGC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 2 cut(s) 250, 292
HpaII CCGG 2 cut(s) 269, 282
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 5 cut(s) 166, 190, 291, 297, 333
Hpy188III TCNNGA 3 cut(s) 179, 236, 323
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 30
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 13, 286
LpnPI CCDG 8 cut(s) 23, 115, 127, 130, 139, 221, 282, 295
Lsp1109I GCAGC 1 cut(s) 107
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 144
MalI GATC 2 cut(s) 15, 288
MbiI CCGCTC 1 cut(s) 105
MboI GATC 2 cut(s) 13, 286
MboII GAAGA 4 cut(s) 85, 103, 350, 355
MflI RGATCY 1 cut(s) 13
MluI ACGCGT 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 8 cut(s) 72, 92, 196, 223, 330, 339, 390, 405
MslI CAYNNNNRTG 1 cut(s) 313
MspI CCGG 2 cut(s) 269, 282
MspR9I CCNGG 2 cut(s) 11, 282
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 2 cut(s) 38, 74
NciI CCSGG 1 cut(s) 282
NdeII GATC 2 cut(s) 13, 286
NlaIV GGNNCC 2 cut(s) 59, 70
NmeAIII GCCGAG 2 cut(s) 22, 45
NmuCI GTSAC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 250, 292
PkrI GCNGC 3 cut(s) 24, 27, 122
PmaCI CACGTG 1 cut(s) 31
PmlI CACGTG 1 cut(s) 31
Ppu21I YACGTR 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 9
PspCI CACGTG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 59, 70
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 313
SatI GCNGC 3 cut(s) 23, 26, 121
Sau3AI GATC 2 cut(s) 13, 286
ScrFI CCNGG 2 cut(s) 11, 282
SetI ASST 8 cut(s) 33, 101, 141, 146, 158, 188, 382, 397
SmiMI CAYNNNNRTG 1 cut(s) 313
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SsiI CCGC 7 cut(s) 23, 26, 72, 105, 151, 228, 368
StyD4I CCNGG 2 cut(s) 9, 280
StyI CCWWGG 1 cut(s) 51
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 198, 382
TauI GCSGC 2 cut(s) 25, 28
TfiI GAWTC 2 cut(s) 250, 292
TscAI CASTG 1 cut(s) 134
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 144
TspRI CASTG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.