Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004182

Physical Location & Seq

Genomic Coordinates Forward (+)

30215917 .. 30216898

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1306100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGAGCCAGAACTTTTCACCACCCCACGTAGATGCATCTCGGCCGTCCTTGGGCTTCCCTCTTGGCACGGCTCTTCTCTTGATCATCATATTCAGCCTCAGTGGAATCTTCTCGTGCTGCTACCACTGGGACAAGCTCAGATCACTCCGTAGATCTTTCAACCAAAACGCTGACCCCGAGGCCGATGTTCAACCGCCATCTCCCTCCAAATCTAAACCTGCCCACATGGATTTGAAGCAGAAGCAGAGGGAAAGCTTGCCGGTGATAATGGCAGGTGACCAGATTCCAAAGTTTATGGCATTGCCATGTCCTCGAGAACCTCCGACAGATGAGAAGACTGTGGTGAAGGTGCAAAAGCAGCCCAAGCCACCTCGATTTCCTGTCCCTTTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.83

Weight (kDa)

9.3

Isoelectric Point (pI)

65.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65660
fragaria_vesca	FvH4_1g18910 FvH4_1g18910 FvH4_1g18910 FvH4_5g33800 FvH4_5g33800
malus_domestica	MD01G1045700.v1.1 MD08G1207400.v1.1 MD15G1306100.v1.1 MD15G1391900.v1.1
prunus_persica	Prupe.1G540600_v2.0.a1 Prupe.6G210400_v2.0.a1
pyrus_communis	pycom15g35270
rosa_chinensis	RchiOBHm_Chr2g0109921 RchiOBHm_Chr7g0233121
rosa_laevigata	RLG00000001295 RLG00000017769
rosa_multiflora	Rmu_sc0001362.1_g000012 Rmu_sc0005173.1_g000017
rosa_roxburghii	Rroxscaffold_2G00133880 Rroxscaffold_3G00227630
rosa_rugosa	Rorug02G0163800 Rorug07G0278400 Rorug07G0278500 Rorug07G0278600
rosa_samantha	Rh2BG225800 Rh2CG218000 Rh7AG434200 Rh7BG406700 Rh7CG453200 Rh7DG422500
rosa_wichuraiana	Rw2G016660 Rw7G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	2 cut(s)	229, 266
AciI	CCGC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	163, 194, 238
AluBI	AGCT	2 cut(s)	139, 258
AluI	AGCT	2 cut(s)	139, 258
Ama87I	CYCGRG	2 cut(s)	179, 315
AoxI	GGCC	2 cut(s)	44, 183
ApeKI	GCWGC	2 cut(s)	120, 361
AsuHPI	GGTGA	4 cut(s)	12, 277, 290, 358
AvaI	CYCGRG	2 cut(s)	179, 315
BauI	CACGAG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	107, 373
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	2 cut(s)	31, 87
BclI	TGATCA	1 cut(s)	84
BfuAI	ACCTGC	2 cut(s)	229, 266
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	2 cut(s)	121, 362
BlsI	GCNGC	2 cut(s)	122, 363
BmeT110I	CYCGRG	2 cut(s)	179, 315
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	25, 47
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	344
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	51, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	51, 180
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	115, 154
BseNI	ACTGG	1 cut(s)	134
BseX3I	CGGCCG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	107, 373
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	46, 185
BsiEI	CGRYCG	1 cut(s)	47
BsiHKCI	CYCGRG	2 cut(s)	179, 315
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	2 cut(s)	146, 371
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmFI	GGGAC	2 cut(s)	146, 371
BsnI	GGCC	2 cut(s)	46, 185
BsoBI	CYCGRG	2 cut(s)	179, 315
Bsp143I	GATC	3 cut(s)	84, 143, 155
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	2 cut(s)	46, 185
BspCNI	CTCAG	2 cut(s)	114, 153
BspMI	ACCTGC	2 cut(s)	229, 266
BspQI	GCTCTTC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	51, 180
BssMI	GATC	3 cut(s)	84, 143, 155
BssSI	CACGAG	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	81
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	101, 140
BstEII	GGTNACC	1 cut(s)	278
BstKTI	GATC	3 cut(s)	87, 146, 158
BstMBI	GATC	3 cut(s)	84, 143, 155
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 367
BstPI	GGTNACC	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	107, 373
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BstZI	CGGCCG	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	46, 185
BtsIMutI	CAGTG	2 cut(s)	109, 127
BveI	ACCTGC	2 cut(s)	229, 266
Cac8I	GCNNGC	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	262
CviAII	CATG	2 cut(s)	229, 309
DdeI	CTNAG	2 cut(s)	101, 140
DpnI	GATC	3 cut(s)	86, 145, 157
DpnII	GATC	3 cut(s)	84, 143, 155
EaeI	YGGCCR	1 cut(s)	44
EagI	CGGCCG	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EclXI	CGGCCG	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	51
Eco52I	CGGCCG	1 cut(s)	44
Eco88I	CYCGRG	2 cut(s)	179, 315
Eco91I	GGTNACC	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	232, 312
FaiI	YATR	4 cut(s)	92, 230, 299, 310
FaqI	GGGAC	2 cut(s)	146, 371
FatI	CATG	2 cut(s)	228, 308
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	121, 362
Fsp4HI	GCNGC	2 cut(s)	121, 362
GluI	GCNGC	2 cut(s)	121, 362
HaeIII	GGCC	2 cut(s)	46, 185
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	2 cut(s)	232, 312
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	2 cut(s)	108, 286
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	4 cut(s)	12, 277, 290, 358
Hpy188I	TCNGA	2 cut(s)	143, 327
Hpy188III	TCNNGA	2 cut(s)	82, 317
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	38, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 367
HpyF3I	CTNAG	2 cut(s)	101, 140
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	232, 312
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	84, 143, 155
LguI	GCTCTTC	1 cut(s)	81
LpnPI	CCDG	6 cut(s)	23, 115, 234, 261, 276, 296
Lsp1109I	GCAGC	2 cut(s)	107, 373
LweI	GCATC	2 cut(s)	25, 47
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	3 cut(s)	86, 145, 157
MboI	GATC	3 cut(s)	84, 143, 155
MboII	GAAGA	3 cut(s)	68, 103, 349
MflI	RGATCY	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	8 cut(s)	72, 110, 175, 217, 243, 324, 333, 384
Mph1103I	ATGCAT	1 cut(s)	40
MslI	CAYNNNNRTG	2 cut(s)	33, 307
MspI	CCGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	361, 367
NdeII	GATC	3 cut(s)	84, 143, 155
NlaIII	CATG	2 cut(s)	232, 312
NmeAIII	GCCGAG	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	108, 286
PkrI	GCNGC	2 cut(s)	122, 363
Ppu21I	YACGTR	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	155
RseI	CAYNNNNRTG	2 cut(s)	33, 307
SapI	GCTCTTC	1 cut(s)	81
SatI	GCNGC	2 cut(s)	121, 362
Sau3AI	GATC	3 cut(s)	84, 143, 155
SetI	ASST	8 cut(s)	33, 141, 223, 260, 280, 325, 354, 376
SfaNI	GCATC	2 cut(s)	25, 47
Sfr274I	CTCGAG	1 cut(s)	315
SlaI	CTCGAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	2 cut(s)	33, 307
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SsiI	CCGC	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	316, 376
TfiI	GAWTC	2 cut(s)	108, 286
TscAI	CASTG	2 cut(s)	109, 134
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	120, 361
Tsp45I	GTSAC	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	109, 134
XhoI	CTCGAG	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.