Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010516

Physical Location & Seq

Genomic Coordinates Forward (+)

5131122 .. 5133622

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCAGCATGATACATGTCATCTGGTTCTTTCACACTTTCGAATAGTGGCCCCTAATCGAGAACACGCTGAAGCTAAGCTTACATTACCTCTTATAGATGGGCAGGAGTGCGTCGACGATGGGCTGGGTTCGTGCCGAGATGATGGTGCTGCCGGGGTGCGCTCAGGGTTGGAGTTCGATTCGGGCTGGATCGTGGCTGGGGAAGGGCGTTGTTTGCCGGCGCTTGTTCTGCACAGTGAGGTGCGCCGGGGTCCGTGGAGGAGGCCGGTGTGCTCGCCGTCGGGGAAGGTGGGTGCCCAGAGAAGAACTCAAGTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

107

Amino Acids

11.5

Weight (kDa)

6.95

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09570 FvH4_1g13492 FvH4_1g20681 FvH4_2g13381 FvH4_2g38462 FvH4_3g16330 FvH4_3g32140 FvH4_3g34152 FvH4_3g34592 FvH4_4g06431 FvH4_4g07671 FvH4_4g09351 FvH4_4g13941 FvH4_4g17662 FvH4_5g13181 FvH4_5g30192 FvH4_5g34551 FvH4_5g36050 FvH4_6g13191 FvH4_7g24551
rosa_chinensis	RchiOBHm_Chr5g0039671

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	90
AflIII	ACRYGT	1 cut(s)	14
AluBI	AGCT	2 cut(s)	74, 79
AluI	AGCT	2 cut(s)	74, 79
Alw21I	GWGCWC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	2 cut(s)	48, 263
ApeKI	GCWGC	2 cut(s)	4, 149
AspLEI	GCGC	3 cut(s)	162, 223, 246
AspS9I	GGNCC	2 cut(s)	49, 251
AsuC2I	CCSGG	2 cut(s)	154, 248
AsuII	TTCGAA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	16, 136
BccI	CCATC	3 cut(s)	92, 113, 137
BceAI	ACGGC	1 cut(s)	262
BcnI	CCSGG	2 cut(s)	154, 248
BfoI	RGCGCY	1 cut(s)	224
BisI	GCNGC	2 cut(s)	5, 150
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	2 cut(s)	6, 151
Bme1390I	CCNGG	2 cut(s)	154, 248
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	49, 251
BmiI	GGNNCC	3 cut(s)	51, 252, 295
BmrFI	CCNGG	2 cut(s)	154, 248
BplI	GAGNNNNNCTC	1 cut(s)	292
Bpu10I	CCTNAGC	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	154, 248
BsaJI	CCNNGG	3 cut(s)	153, 247, 254
Bse118I	RCCGGY	2 cut(s)	217, 265
BseDI	CCNNGG	3 cut(s)	153, 247, 254
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	16, 136
BseYI	CCCAGC	2 cut(s)	124, 197
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	50, 265
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	4 cut(s)	153, 218, 247, 266
BsnI	GGCC	2 cut(s)	50, 265
Bsp119I	TTCGAA	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	275, 298
Bsp143I	GATC	1 cut(s)	189
Bsp1720I	GCTNAGC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	50, 265
BspCNI	CTCAG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	51, 252, 295
BspPI	GGATC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	293
BsrFI	RCCGGY	2 cut(s)	217, 265
BssAI	RCCGGY	2 cut(s)	217, 265
BssECI	CCNNGG	3 cut(s)	153, 247, 254
BssMI	GATC	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	219, 275
BstDEI	CTNAG	2 cut(s)	75, 163
BstDSI	CCRYGG	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	3 cut(s)	162, 223, 246
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 229
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	152, 246
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	16, 136
BsuRI	GGCC	2 cut(s)	50, 265
BtgI	CCRYGG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	219, 275
CfoI	GCGC	3 cut(s)	162, 223, 246
Cfr10I	RCCGGY	2 cut(s)	217, 265
Cfr13I	GGNCC	2 cut(s)	49, 251
CseI	GACGC	1 cut(s)	100
CviAII	CATG	2 cut(s)	8, 15
CviJI	RGCY	7 cut(s)	50, 74, 79, 124, 186, 197, 265
CviKI_1	RGCY	7 cut(s)	50, 74, 79, 124, 186, 197, 265
DdeI	CTNAG	2 cut(s)	75, 163
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	90
FaeI	CATG	2 cut(s)	11, 18
FaiI	YATR	3 cut(s)	9, 16, 95
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	2 cut(s)	7, 14
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	5, 150
Fsp4HI	GCNGC	2 cut(s)	5, 150
GlaI	GCGC	3 cut(s)	161, 222, 245
GluI	GCNGC	2 cut(s)	5, 150
GsaI	CCCAGC	2 cut(s)	128, 201
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	50, 265
HapII	CCGG	4 cut(s)	153, 218, 247, 266
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	3 cut(s)	162, 223, 246
Hin1II	CATG	2 cut(s)	11, 18
Hin6I	GCGC	3 cut(s)	160, 221, 244
HinP1I	GCGC	3 cut(s)	160, 221, 244
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	4 cut(s)	153, 218, 247, 266
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	3 cut(s)	116, 119, 283
HpyAV	CCTTC	2 cut(s)	197, 280
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	4, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 229
HpyF3I	CTNAG	2 cut(s)	75, 163
Hsp92II	CATG	2 cut(s)	11, 18
HspAI	GCGC	3 cut(s)	160, 221, 244
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	189
Lsp1109I	GCAGC	2 cut(s)	16, 136
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	275, 298
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	4 cut(s)	99, 232, 252, 255
MroNI	GCCGGC	1 cut(s)	217
MspI	CCGG	4 cut(s)	153, 218, 247, 266
MspR9I	CCNGG	2 cut(s)	154, 248
MwoI	GCNNNNNNNGC	2 cut(s)	214, 229
NaeI	GCCGGC	1 cut(s)	219
NciI	CCSGG	2 cut(s)	154, 248
NdeII	GATC	1 cut(s)	189
NgoMIV	GCCGGC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	11, 18
NlaIV	GGNNCC	3 cut(s)	51, 252, 295
NmeAIII	GCCGAG	1 cut(s)	161
NspI	RCATGY	1 cut(s)	18
NspV	TTCGAA	1 cut(s)	40
PciI	ACATGT	1 cut(s)	14
PdiI	GCCGGC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	6, 151
PscI	ACATGT	1 cut(s)	14
PspFI	CCCAGC	2 cut(s)	124, 197
PspN4I	GGNNCC	3 cut(s)	51, 252, 295
PspPI	GGNCC	2 cut(s)	49, 251
SalI	GTCGAC	1 cut(s)	113
SatI	GCNGC	2 cut(s)	5, 150
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	2 cut(s)	49, 251
ScrFI	CCNGG	2 cut(s)	154, 248
SduI	GDGCHC	2 cut(s)	275, 298
SetI	ASST	5 cut(s)	76, 81, 91, 243, 291
SfuI	TTCGAA	1 cut(s)	40
SgrDI	CGTCGACG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	152, 246
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	4 cut(s)	40, 58, 114, 177
TfiI	GAWTC	1 cut(s)	179
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	2 cut(s)	4, 149
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	251
XceI	RCATGY	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.