Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010516

Physical Location & Seq

Genomic Coordinates Forward (+)

34380820 .. 34381479

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31823

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCAGCTGCCTCCGCTTCAAGTTCGCCATCTCCTCAACCGCAGCCCGACCGCACCACCTTCTCATCCCACTCAACGCCGGCGCTGCCTCCCGCCTTTTCCGTCATCCTCTTCCTCCTAGTGTTCTTCCGCGAAATCACCCGCAAACACACCGGCCCCGAAGCCAACTCCAAGCTCCCTCCTCATACCCACAAACGCAAAATCACTCGCAACATCTTTCTGATATCAGATAATAATTCCTACTCATCAACCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

85

Amino Acids

9.36

Weight (kDa)

10.52

Isoelectric Point (pI)

69.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09570 FvH4_1g13492 FvH4_1g20681 FvH4_2g13381 FvH4_2g38462 FvH4_3g16330 FvH4_3g32140 FvH4_3g34152 FvH4_3g34592 FvH4_4g06431 FvH4_4g07671 FvH4_4g09351 FvH4_4g13941 FvH4_4g17662 FvH4_5g13181 FvH4_5g30192 FvH4_5g34551 FvH4_5g36050 FvH4_6g13191 FvH4_7g24551
rosa_chinensis	RchiOBHm_Chr5g0039671

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	6 cut(s)	15, 41, 52, 93, 130, 142
AgsI	TTSAA	1 cut(s)	21
AluBI	AGCT	2 cut(s)	8, 175
AluI	AGCT	2 cut(s)	8, 175
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	5, 8, 43, 85
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	17, 55, 72
BccI	CCATC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	4 cut(s)	6, 9, 44, 86
BlsI	GCNGC	4 cut(s)	7, 10, 45, 87
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
Bse118I	RCCGGY	2 cut(s)	79, 152
Bse1I	ACTGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	65, 105
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	2 cut(s)	24, 171
BseXI	GCAGC	3 cut(s)	17, 55, 72
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	80, 153
BsnI	GGCC	1 cut(s)	156
BspACI	CCGC	6 cut(s)	15, 41, 52, 93, 130, 142
BspANI	GGCC	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	157
BsrFI	RCCGGY	2 cut(s)	79, 152
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	2 cut(s)	79, 152
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	65, 105
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 85
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	17, 55, 72
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	65, 105
Cac8I	GCNNGC	1 cut(s)	81
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	2 cut(s)	79, 152
Cfr13I	GGNCC	1 cut(s)	155
CviJI	RGCY	5 cut(s)	8, 46, 156, 164, 175
CviKI_1	RGCY	5 cut(s)	8, 46, 156, 164, 175
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco32I	GATATC	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	225
FaiI	YATR	1 cut(s)	186
FauI	CCCGC	2 cut(s)	100, 149
Fnu4HI	GCNGC	4 cut(s)	6, 9, 44, 86
FokI	GGATG	2 cut(s)	52, 92
Fsp4HI	GCNGC	4 cut(s)	6, 9, 44, 86
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	4 cut(s)	6, 9, 44, 86
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	80, 153
HhaI	GCGC	1 cut(s)	85
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HpaII	CCGG	2 cut(s)	80, 153
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	222, 229
HpyAV	CCTTC	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 85
HspAI	GCGC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	2 cut(s)	93, 166
Lsp1109I	GCAGC	3 cut(s)	17, 55, 72
MaeI	CTAG	1 cut(s)	119
MboII	GAAGA	2 cut(s)	103, 118
MluCI	AATT	1 cut(s)	235
MnlI	CCTC	7 cut(s)	22, 45, 99, 119, 125, 189, 192
MreI	CGCCGGCG	1 cut(s)	79
MroNI	GCCGGC	1 cut(s)	79
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	2 cut(s)	80, 153
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	14, 85
NaeI	GCCGGC	1 cut(s)	81
NgoMIV	GCCGGC	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	157
PdiI	GCCGGC	1 cut(s)	81
PkrI	GCNGC	4 cut(s)	7, 10, 45, 87
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	8
SatI	GCNGC	4 cut(s)	6, 9, 44, 86
Sau96I	GGNCC	1 cut(s)	155
SetI	ASST	3 cut(s)	10, 62, 177
SgrAI	CRCCGGYG	1 cut(s)	79
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	6 cut(s)	15, 41, 52, 93, 130, 142
SspMI	CTAG	1 cut(s)	119
TasI	AATT	1 cut(s)	235
TseI	GCWGC	4 cut(s)	5, 8, 43, 85
TspGWI	ACGGA	1 cut(s)	91
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.