Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010516

Physical Location & Seq

Genomic Coordinates Forward (+)

25213694 .. 25214842

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34551.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCTTCCCGGAGGCTTAGTACTTCGGTTTTCTTCTTCGGCTCCTCTTCCTCGATTTTTGGTGATTGATGACGGCTTCAATATCTCACTTCTCGCTTTGTTCCTCGTTGAGGTGGCAGCAGAACTAGAAGTAGAGAAGCCAGTGGAAGAAGAAGAGGCTCAAGAGGTTAAAGTCGAAGAGCCTGCTGTTGCTGTTTTCGAGGAGACCACTGAGGCTGCTAAGGAGCCAGTGGCGGCTCCCGTAGTCGAGGAGGAAGTAGAGAAACTAGTTGAAGCAGCGAAGGAGGCACCTGAGGTTGTTGCCACAAAAGAAGCTCCGGTTGAGAAGGCTGATAAGCGAGTCACCGGTGACCGGAATCCTACGACCAGAGAAATCCGGCAGCCGGTAACCGAAATCCGGCGACCAGAGAAATCCGGCGGCCGGTTACCGGAGTCGGGTGAGATTCCGGCCAAGTATTCTCTCTTCCATTTTCTCTCTCTATGCATGTTTAAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.11

Weight (kDa)

4.65

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09570 FvH4_1g13492 FvH4_1g20681 FvH4_2g13381 FvH4_2g38462 FvH4_3g16330 FvH4_3g32140 FvH4_3g34152 FvH4_3g34592 FvH4_4g06431 FvH4_4g07671 FvH4_4g09351 FvH4_4g13941 FvH4_4g17662 FvH4_5g13181 FvH4_5g30192 FvH4_5g34551 FvH4_5g36050 FvH4_6g13191 FvH4_7g24551
rosa_chinensis	RchiOBHm_Chr5g0039671

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	286
AciI	CCGC	2 cut(s)	233, 417
AcoI	YGGCCR	2 cut(s)	418, 447
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	7 cut(s)	109, 351, 382, 396, 420, 427, 434
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	79, 272
AhlI	ACTAGT	1 cut(s)	265
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	197
AoxI	GGCC	2 cut(s)	418, 447
ApeKI	GCWGC	4 cut(s)	116, 215, 275, 379
AsiGI	ACCGGT	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	4 cut(s)	73, 334, 359, 449
AxyI	CCTNAGG	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	286
BarI	GAAGNNNNNNTAC	2 cut(s)	446, 478
BbvI	GCAGC	4 cut(s)	128, 202, 287, 391
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	125, 266
BisI	GCNGC	6 cut(s)	117, 216, 234, 276, 380, 418
BlsI	GCNGC	6 cut(s)	118, 217, 235, 277, 381, 419
BmcAI	AGTACT	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	4 cut(s)	42, 225, 237, 288
BmrFI	CCNGG	1 cut(s)	9
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	197
BsaWI	WCCGGW	4 cut(s)	316, 344, 351, 427
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	7 cut(s)	109, 351, 382, 396, 420, 427, 434
Bse118I	RCCGGY	3 cut(s)	344, 382, 420
Bse1I	ACTGG	2 cut(s)	140, 227
Bse21I	CCTNAGG	1 cut(s)	291
BseLI	CCNNNNNNNGG	7 cut(s)	109, 351, 382, 396, 420, 427, 434
BseMII	CTCAG	2 cut(s)	201, 282
BseNI	ACTGG	2 cut(s)	140, 227
BseRI	GAGGAG	3 cut(s)	33, 215, 263
BseX3I	CGGCCG	1 cut(s)	418
BseXI	GCAGC	4 cut(s)	128, 202, 287, 391
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	420, 449
BshNI	GGYRCC	1 cut(s)	286
BshTI	ACCGGT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	421
BslI	CCNNNNNNNGG	7 cut(s)	109, 351, 382, 396, 420, 427, 434
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	420, 449
Bso31I	GGTCTC	1 cut(s)	197
BspACI	CCGC	2 cut(s)	233, 417
BspANI	GGCC	2 cut(s)	420, 449
BspCNI	CTCAG	2 cut(s)	202, 283
BspLI	GGNNCC	4 cut(s)	42, 225, 237, 288
BspQI	GCTCTTC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	197
BsrFI	RCCGGY	3 cut(s)	344, 382, 420
BsrI	ACTGG	2 cut(s)	140, 227
BssAI	RCCGGY	3 cut(s)	344, 382, 420
Bst6I	CTCTTC	4 cut(s)	51, 147, 171, 467
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	4 cut(s)	16, 210, 219, 291
BstEII	GGTNACC	3 cut(s)	347, 385, 423
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	197
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	487
BstPI	GGTNACC	3 cut(s)	347, 385, 423
BstSCI	CCNGG	1 cut(s)	7
BstV1I	GCAGC	4 cut(s)	128, 202, 287, 391
BstZI	CGGCCG	1 cut(s)	418
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	420, 449
BtsIMutI	CAGTG	3 cut(s)	147, 207, 234
Cac8I	GCNNGC	1 cut(s)	183
Cfr10I	RCCGGY	3 cut(s)	344, 382, 420
Csp6I	GTAC	1 cut(s)	20
CspAI	ACCGGT	1 cut(s)	344
CviAII	CATG	1 cut(s)	484
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	4 cut(s)	16, 210, 219, 291
EaeI	YGGCCR	2 cut(s)	418, 447
EagI	CGGCCG	1 cut(s)	418
Eam1104I	CTCTTC	4 cut(s)	51, 147, 171, 467
EarI	CTCTTC	4 cut(s)	51, 147, 171, 467
EclXI	CGGCCG	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	197
Eco52I	CGGCCG	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	291
Eco91I	GGTNACC	3 cut(s)	347, 385, 423
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoO65I	GGTNACC	3 cut(s)	347, 385, 423
EcoT22I	ATGCAT	1 cut(s)	485
FaeI	CATG	1 cut(s)	487
FaiI	YATR	2 cut(s)	481, 485
FatI	CATG	1 cut(s)	483
Fnu4HI	GCNGC	6 cut(s)	117, 216, 234, 276, 380, 418
Fsp4HI	GCNGC	6 cut(s)	117, 216, 234, 276, 380, 418
FspBI	CTAG	2 cut(s)	125, 266
GluI	GCNGC	6 cut(s)	117, 216, 234, 276, 380, 418
HaeIII	GGCC	2 cut(s)	420, 449
Hin1II	CATG	1 cut(s)	487
HinfI	GANTC	4 cut(s)	339, 355, 431, 442
HphI	GGTGA	4 cut(s)	73, 334, 359, 449
Hpy188III	TCNNGA	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	274, 319
HpyCH4V	TGCA	1 cut(s)	483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	4 cut(s)	16, 210, 219, 291
Hsp92II	CATG	1 cut(s)	487
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	4 cut(s)	46, 223, 241, 319
Lsp1109I	GCAGC	4 cut(s)	128, 202, 287, 391
MaeI	CTAG	2 cut(s)	125, 266
MaeIII	GTNAC	4 cut(s)	340, 347, 385, 423
MboII	GAAGA	8 cut(s)	24, 27, 38, 158, 161, 164, 188, 454
MlyI	GAGTC	2 cut(s)	348, 440
Mph1103I	ATGCAT	1 cut(s)	485
MseI	TTAA	2 cut(s)	168, 489
MspR9I	CCNGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	9
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	4 cut(s)	42, 225, 237, 288
NmuCI	GTSAC	2 cut(s)	340, 347
NsiI	ATGCAT	1 cut(s)	485
NspI	RCATGY	1 cut(s)	487
PciSI	GCTCTTC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	355, 442
PfoI	TCCNGGA	1 cut(s)	7
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	6 cut(s)	118, 217, 235, 277, 381, 419
PleI	GAGTC	2 cut(s)	347, 439
PpsI	GAGTC	2 cut(s)	347, 439
PspEI	GGTNACC	3 cut(s)	347, 385, 423
PspN4I	GGNNCC	4 cut(s)	42, 225, 237, 288
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	168, 489
SatI	GCNGC	6 cut(s)	117, 216, 234, 276, 380, 418
ScaI	AGTACT	1 cut(s)	21
SchI	GAGTC	2 cut(s)	348, 440
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	5 cut(s)	114, 168, 292, 297, 316
SgrAI	CRCCGGYG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
SpeI	ACTAGT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	233, 417
SspMI	CTAG	2 cut(s)	125, 266
StyD4I	CCNGG	1 cut(s)	7
TaqI	TCGA	4 cut(s)	52, 174, 198, 246
TatI	WGTACW	1 cut(s)	19
TauI	GCSGC	2 cut(s)	236, 420
TfiI	GAWTC	2 cut(s)	355, 442
Tru1I	TTAA	2 cut(s)	168, 489
Tru9I	TTAA	2 cut(s)	168, 489
TscAI	CASTG	3 cut(s)	147, 214, 234
TseFI	GTSAC	2 cut(s)	340, 347
TseI	GCWGC	4 cut(s)	116, 215, 275, 379
Tsp45I	GTSAC	2 cut(s)	340, 347
TspRI	CASTG	3 cut(s)	147, 214, 234
XagI	CCTNNNNNAGG	1 cut(s)	107
XceI	RCATGY	1 cut(s)	487
XspI	CTAG	2 cut(s)	125, 266
ZrmI	AGTACT	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.