Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010516

Physical Location & Seq

Genomic Coordinates Reverse (-)

7419080 .. 7421589

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13492.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGACACTTTTCCTTTTGAGAAGAGAAACAAACTCCGCACGTGCCAAAAGAAGGAGGAGCCCAGGAGGCGGAGGAGAGGTTTGCGAGCGCCGTCGCCGTCGTCTCTTCTACCGCAGCCTAACCTCGTCGTCCCACTGGTCGACGACGCCGCCACCACCGCCTTCTCCCTCCTCTTCTTCCTCCTCGTCTGCTTCAGCAAAATCACCCACAACCGCACAGCCCCGGAAGCCGACTCTAAGCCGCCTCACCGCTTCTCCTACTCCCGCGGAAGGGCGTTGCTTGCCGGCATGCGCCGGGGTCGGTGGAGGAGGCCGATGTGCTCACTGTCGGGGAAGCAGAGGAAGTTAGAGCCGTCTGTGTTTGCTTCCATCTTCAGAGCTTCCAAACTAGCAGCCTCAGTAACTGGTTATTGGGGGTCAGTAACTAGTTACAGGGGAAATTTCAGTGACCGAAGTCTGGCGGTCGGGGAAATTCCGGTGACCGGAGTCCCGTGGCCGGTGACCGGAGTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

172

Amino Acids

19.19

Weight (kDa)

11.31

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09570 FvH4_1g13492 FvH4_1g20681 FvH4_2g13381 FvH4_2g38462 FvH4_3g16330 FvH4_3g32140 FvH4_3g34152 FvH4_3g34592 FvH4_4g06431 FvH4_4g07671 FvH4_4g09351 FvH4_4g13941 FvH4_4g17662 FvH4_5g13181 FvH4_5g30192 FvH4_5g34551 FvH4_5g36050 FvH4_6g13191 FvH4_7g24551
rosa_chinensis	RchiOBHm_Chr5g0039671

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	494
AcsI	RAATTY	2 cut(s)	439, 471
AcuI	CTGAAG	2 cut(s)	178, 358
AcvI	CACGTG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	8 cut(s)	52, 69, 270, 271, 457, 482, 496, 503
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	2 cut(s)	311, 494
ApeKI	GCWGC	2 cut(s)	115, 392
ApoI	RAATTY	2 cut(s)	439, 471
AspLEI	GCGC	2 cut(s)	91, 294
AsuC2I	CCSGG	2 cut(s)	224, 296
AsuHPI	GGTGA	4 cut(s)	196, 239, 490, 511
BanII	GRGCYC	1 cut(s)	63
BbrPI	CACGTG	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	127, 404
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	3 cut(s)	76, 82, 337
BciT130I	CCWGG	1 cut(s)	64
BcnI	CCSGG	2 cut(s)	224, 296
BcoDI	GTCTC	1 cut(s)	108
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	2 cut(s)	389, 426
BfoI	RGCGCY	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	4 cut(s)	116, 150, 242, 393
BlsI	GCNGC	4 cut(s)	117, 151, 243, 394
Bme1390I	CCNGG	3 cut(s)	64, 224, 296
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	3 cut(s)	64, 224, 296
BoxI	GACNNNNGTC	3 cut(s)	453, 485, 506
BpuMI	CCSGG	2 cut(s)	224, 296
BsaAI	YACGTR	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	5 cut(s)	62, 222, 265, 295, 491
BsaWI	WCCGGW	3 cut(s)	475, 482, 503
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 239, 269
Bsc4I	CCNNNNNNNGG	8 cut(s)	52, 69, 270, 271, 457, 482, 496, 503
Bse118I	RCCGGY	2 cut(s)	284, 496
Bse1I	ACTGG	3 cut(s)	141, 409, 511
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	5 cut(s)	62, 222, 265, 295, 491
BseLI	CCNNNNNNNGG	8 cut(s)	52, 69, 270, 271, 457, 482, 496, 503
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	3 cut(s)	141, 409, 511
BseRI	GAGGAG	5 cut(s)	71, 88, 161, 173, 322
BseXI	GCAGC	2 cut(s)	127, 404
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	313, 496
BsiEI	CGRYCG	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	7 cut(s)	224, 285, 295, 476, 483, 497, 504
BslFI	GGGAC	2 cut(s)	116, 473
BslI	CCNNNNNNNGG	8 cut(s)	52, 69, 270, 271, 457, 482, 496, 503
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	2 cut(s)	116, 473
BsnI	GGCC	2 cut(s)	313, 496
Bsp1286I	GDGCHC	2 cut(s)	63, 323
BspANI	GGCC	2 cut(s)	313, 496
BspCNI	CTCAG	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	60
BsrFI	RCCGGY	2 cut(s)	284, 496
BsrI	ACTGG	3 cut(s)	141, 409, 511
BssAI	RCCGGY	2 cut(s)	284, 496
BssECI	CCNNGG	5 cut(s)	62, 222, 265, 295, 491
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	3 cut(s)	17, 111, 179
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	42
BstC8I	GCNNGC	4 cut(s)	87, 282, 286, 290
BstDEI	CTNAG	2 cut(s)	237, 397
BstDSI	CCRYGG	2 cut(s)	265, 491
BstEII	GGTNACC	2 cut(s)	478, 499
BstFNI	CGCG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 294
BstMAI	GTCTC	1 cut(s)	108
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 158, 227, 281
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	292
BstPAI	GACNNNNGTC	3 cut(s)	453, 485, 506
BstPI	GGTNACC	2 cut(s)	478, 499
BstSCI	CCNGG	3 cut(s)	62, 222, 294
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	127, 404
BsuRI	GGCC	2 cut(s)	313, 496
BtgI	CCRYGG	2 cut(s)	265, 491
BtsIMutI	CAGTG	3 cut(s)	134, 323, 451
Cac8I	GCNNGC	4 cut(s)	87, 282, 286, 290
CaiI	CAGNNNCTG	1 cut(s)	404
CfoI	GCGC	2 cut(s)	91, 294
Cfr10I	RCCGGY	2 cut(s)	284, 496
Cfr42I	CCGCGG	1 cut(s)	268
CseI	GACGC	1 cut(s)	155
CviAII	CATG	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	237, 397
EaeI	YGGCCR	1 cut(s)	494
Eam1104I	CTCTTC	3 cut(s)	17, 111, 179
EarI	CTCTTC	3 cut(s)	17, 111, 179
EciI	GGCGGA	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	178, 358
Eco72I	CACGTG	1 cut(s)	42
Eco91I	GGTNACC	2 cut(s)	478, 499
EcoO65I	GGTNACC	2 cut(s)	478, 499
EcoRII	CCWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	1 cut(s)	292
FaiI	YATR	1 cut(s)	290
FaqI	GGGAC	2 cut(s)	116, 473
FatI	CATG	1 cut(s)	288
FauI	CCCGC	1 cut(s)	272
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	116, 150, 242, 393
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	4 cut(s)	116, 150, 242, 393
FspBI	CTAG	2 cut(s)	389, 426
GlaI	GCGC	2 cut(s)	90, 293
GluI	GCNGC	4 cut(s)	116, 150, 242, 393
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	313, 496
HapII	CCGG	7 cut(s)	224, 285, 295, 476, 483, 497, 504
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	91, 294
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	2 cut(s)	89, 292
HinP1I	GCGC	2 cut(s)	89, 292
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	3 cut(s)	233, 486, 507
HpaII	CCGG	7 cut(s)	224, 285, 295, 476, 483, 497, 504
HphI	GGTGA	4 cut(s)	196, 239, 490, 511
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	377
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	5 cut(s)	97, 103, 131, 146, 149
HpyAV	CCTTC	3 cut(s)	46, 172, 264
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 158, 227, 281
HpyF3I	CTNAG	2 cut(s)	237, 397
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	2 cut(s)	89, 292
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
KspI	CCGCGG	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	2 cut(s)	127, 404
MaeI	CTAG	2 cut(s)	389, 426
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	6 cut(s)	400, 421, 428, 446, 478, 499
MboII	GAAGA	5 cut(s)	34, 98, 166, 169, 364
MhlI	GDGCHC	2 cut(s)	63, 323
MluCI	AATT	2 cut(s)	439, 471
MlyI	GAGTC	3 cut(s)	227, 495, 516
MroNI	GCCGGC	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	7 cut(s)	224, 285, 295, 476, 483, 497, 504
MspR9I	CCNGG	3 cut(s)	64, 224, 296
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	67, 158, 227, 281
NaeI	GCCGGC	1 cut(s)	286
NciI	CCSGG	2 cut(s)	224, 296
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	3 cut(s)	446, 478, 499
NspI	RCATGY	1 cut(s)	292
PaeI	GCATGC	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	117, 151, 243, 394
PleI	GAGTC	3 cut(s)	227, 494, 515
PmaCI	CACGTG	1 cut(s)	42
PmlI	CACGTG	1 cut(s)	42
PpsI	GAGTC	3 cut(s)	227, 494, 515
Ppu21I	YACGTR	1 cut(s)	42
PshAI	GACNNNNGTC	3 cut(s)	453, 485, 506
Psp6I	CCWGG	1 cut(s)	62
PspCI	CACGTG	1 cut(s)	42
PspEI	GGTNACC	2 cut(s)	478, 499
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	404
SacII	CCGCGG	1 cut(s)	268
SalI	GTCGAC	1 cut(s)	140
SatI	GCNGC	4 cut(s)	116, 150, 242, 393
SchI	GAGTC	3 cut(s)	227, 495, 516
ScrFI	CCNGG	3 cut(s)	64, 224, 296
SduI	GDGCHC	2 cut(s)	63, 323
SetI	ASST	4 cut(s)	44, 82, 126, 382
Sfr303I	CCGCGG	1 cut(s)	268
SgrBI	CCGCGG	1 cut(s)	268
SpeI	ACTAGT	1 cut(s)	425
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	2 cut(s)	439, 471
SspMI	CTAG	2 cut(s)	389, 426
StyD4I	CCNGG	3 cut(s)	62, 222, 294
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	141
TaqII	GACCGA	1 cut(s)	465
TasI	AATT	2 cut(s)	439, 471
TauI	GCSGC	2 cut(s)	152, 244
TscAI	CASTG	3 cut(s)	141, 330, 451
TseFI	GTSAC	3 cut(s)	446, 478, 499
TseI	GCWGC	2 cut(s)	115, 392
Tsp45I	GTSAC	3 cut(s)	446, 478, 499
TspRI	CASTG	3 cut(s)	141, 330, 451
XapI	RAATTY	2 cut(s)	439, 471
XceI	RCATGY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	389, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.