FvH4_3g34592

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010516
Physical Location & Seq
Reverse (-)
29971654 .. 29973571
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34592.t1

Sequence Viewer

Length: 438 bp
ATGGGGTCGAGCCATCTCCGGGATCTCGAGCTACTGGAGGAGGATTGCAACCCCGGCCAAGCTAGGGATTTGAAGGGAAAATCCGGTGACCGGAATCCGGTGGTCGGGGAAATTCCGGTGACCGGAGTCCGAGATAACAGAGCTAGAGCTAAAAGTGGAAAGAGTATGACTAGCATGGAGCTACTAGCCATGGTGAGCTATGCACTTGAGGATGTCTATGCAATTGAGGACGGATGGCCGAAGAAATCGAGGAACAAATTGATCGTTGCAGGTCCAAACCCGGTTTGCTCAGATTTGGCGTTCGGTGTTCGAATGACTATTAATATACCTTTCTGGAAGCGGAACGGCCCAACGAACAAGACTCGTGGCTTTGCCACGATGTATGGGCTTTTTCGGCCATCCGAGTTTGTTTCGGACCTCAAATCAGCGTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.06

Weight (kDa)

9.17

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 260
AciI CCGC 1 cut(s) 340
AclWI GGATC 1 cut(s) 30
AcoI YGGCCR 3 cut(s) 55, 236, 395
AcsI RAATTY 1 cut(s) 111
AfiI CCNNNNNNNGG 6 cut(s) 19, 64, 90, 97, 104, 122
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 6 cut(s) 31, 62, 143, 149, 181, 198
AluI AGCT 6 cut(s) 31, 62, 143, 149, 181, 198
AlwI GGATC 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 4 cut(s) 55, 236, 346, 395
ApoI RAATTY 1 cut(s) 111
AseI ATTAAT 1 cut(s) 321
AspS9I GGNCC 3 cut(s) 272, 347, 415
AsuC2I CCSGG 3 cut(s) 20, 54, 281
AsuHPI GGTGA 3 cut(s) 98, 130, 205
AsuII TTCGAA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 272, 415
BauI CACGAG 1 cut(s) 363
BccI CCATC 3 cut(s) 21, 228, 406
BceAI ACGGC 1 cut(s) 361
BcnI CCSGG 3 cut(s) 20, 54, 281
BfaI CTAG 4 cut(s) 63, 144, 171, 185
BfuAI ACCTGC 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 20, 54, 281
Bme18I GGWCC 2 cut(s) 272, 415
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 272, 347, 415
BmrFI CCNGG 3 cut(s) 20, 54, 281
BoxI GACNNNNGTC 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 3 cut(s) 20, 54, 281
BsaJI CCNNGG 2 cut(s) 52, 189
BsaWI WCCGGW 5 cut(s) 83, 90, 97, 115, 122
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 64, 90, 97, 104, 122
Bse1I ACTGG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 52, 189
BseGI GGATG 3 cut(s) 217, 239, 398
BseLI CCNNNNNNNGG 6 cut(s) 19, 64, 90, 97, 104, 122
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 53
BshFI GGCC 4 cut(s) 57, 238, 348, 397
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 8 cut(s) 19, 54, 84, 91, 98, 116, 123, 281
BslI CCNNNNNNNGG 6 cut(s) 19, 64, 90, 97, 104, 122
BsnI GGCC 4 cut(s) 57, 238, 348, 397
BsoBI CYCGRG 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 310
Bsp143I GATC 2 cut(s) 22, 261
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 1 cut(s) 340
BspANI GGCC 4 cut(s) 57, 238, 348, 397
BspCNI CTCAG 1 cut(s) 302
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 310
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 52, 189
BssMI GATC 2 cut(s) 22, 261
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 363
BstBI TTCGAA 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 189
BstEII GGTNACC 2 cut(s) 86, 118
BstF5I GGATG 3 cut(s) 217, 239, 398
BstKTI GATC 2 cut(s) 25, 264
BstMBI GATC 2 cut(s) 22, 261
BstMWI GCNNNNNNNGC 2 cut(s) 54, 394
BstPAI GACNNNNGTC 1 cut(s) 125
BstPI GGTNACC 2 cut(s) 86, 118
BstSCI CCNGG 3 cut(s) 18, 52, 279
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 4 cut(s) 57, 238, 348, 397
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 3 cut(s) 217, 239, 398
BveI ACCTGC 1 cut(s) 260
Cfr13I GGNCC 3 cut(s) 272, 347, 415
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 2 cut(s) 175, 190
DdeI CTNAG 1 cut(s) 289
DpnI GATC 2 cut(s) 24, 263
DpnII GATC 2 cut(s) 22, 261
EaeI YGGCCR 3 cut(s) 55, 236, 395
Eco130I CCWWGG 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 272, 415
Eco88I CYCGRG 1 cut(s) 26
Eco91I GGTNACC 2 cut(s) 86, 118
EcoO65I GGTNACC 2 cut(s) 86, 118
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 2 cut(s) 178, 193
FaiI YATR 7 cut(s) 167, 176, 191, 201, 219, 326, 384
FatI CATG 2 cut(s) 174, 189
FokI GGATG 3 cut(s) 224, 246, 385
FspBI CTAG 4 cut(s) 63, 144, 171, 185
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 4 cut(s) 57, 238, 348, 397
HapII CCGG 8 cut(s) 19, 54, 84, 91, 98, 116, 123, 281
Hin1II CATG 2 cut(s) 178, 193
HinfI GANTC 3 cut(s) 94, 126, 361
HpaII CCGG 8 cut(s) 19, 54, 84, 91, 98, 116, 123, 281
HphI GGTGA 3 cut(s) 98, 130, 205
Hpy188I TCNGA 4 cut(s) 131, 292, 403, 415
Hpy188III TCNNGA 2 cut(s) 26, 334
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 4 cut(s) 48, 203, 221, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 394
HpyF3I CTNAG 1 cut(s) 289
Hsp92II CATG 2 cut(s) 178, 193
Kzo9I GATC 2 cut(s) 22, 261
LmnI GCTCC 1 cut(s) 178
MaeI CTAG 4 cut(s) 63, 144, 171, 185
MaeIII GTNAC 2 cut(s) 86, 118
MalI GATC 2 cut(s) 24, 263
MboI GATC 2 cut(s) 22, 261
MboII GAAGA 1 cut(s) 253
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 22
MluCI AATT 3 cut(s) 111, 222, 257
MlyI GAGTC 2 cut(s) 135, 355
MnlI CCTC 6 cut(s) 31, 34, 202, 220, 243, 428
MseI TTAA 1 cut(s) 321
MspI CCGG 8 cut(s) 19, 54, 84, 91, 98, 116, 123, 281
MspR9I CCNGG 3 cut(s) 20, 54, 281
MunI CAATTG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 54, 394
NciI CCSGG 3 cut(s) 20, 54, 281
NcoI CCATGG 1 cut(s) 189
NdeII GATC 2 cut(s) 22, 261
NlaIII CATG 2 cut(s) 178, 193
NmuCI GTSAC 2 cut(s) 86, 118
NspV TTCGAA 1 cut(s) 310
PaeR7I CTCGAG 1 cut(s) 26
PfeI GAWTC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 18
PleI GAGTC 2 cut(s) 134, 355
PpsI GAGTC 2 cut(s) 134, 355
PshAI GACNNNNGTC 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 321
PspEI GGTNACC 2 cut(s) 86, 118
PspPI GGNCC 3 cut(s) 272, 347, 415
PsuI RGATCY 1 cut(s) 22
SaqAI TTAA 1 cut(s) 321
Sau3AI GATC 2 cut(s) 22, 261
Sau96I GGNCC 3 cut(s) 272, 347, 415
SchI GAGTC 2 cut(s) 135, 355
ScrFI CCNGG 3 cut(s) 20, 54, 281
SetI ASST 9 cut(s) 33, 64, 145, 151, 183, 200, 274, 331, 420
Sfr274I CTCGAG 1 cut(s) 26
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 2 cut(s) 272, 415
SlaI CTCGAG 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 26, 206
SmoI CTYRAG 2 cut(s) 26, 206
Sse9I AATT 3 cut(s) 111, 222, 257
SsiI CCGC 1 cut(s) 340
SspMI CTAG 4 cut(s) 63, 144, 171, 185
StyD4I CCNGG 3 cut(s) 18, 52, 279
StyI CCWWGG 1 cut(s) 189
TaqI TCGA 4 cut(s) 8, 27, 248, 310
TasI AATT 3 cut(s) 111, 222, 257
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseFI GTSAC 2 cut(s) 86, 118
Tsp45I GTSAC 2 cut(s) 86, 118
TspGWI ACGGA 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 272, 415
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 26
XspI CTAG 4 cut(s) 63, 144, 171, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.