FvH4_2g13381

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010516
Physical Location & Seq
Forward (+)
11701692 .. 11704795
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13381.t1

Sequence Viewer

Length: 768 bp
ATGGAGGTTTTCAATGTGGGGTGGCTCGTGTGCGTCTCACATTGCCCCTACATCAGCCGGCACCATGCTATGCTCAATCATGGGGACGAAGATTGTCCAAGAGAAGCCAAAGATATCTCTAGGTTGGCAACTGTTTCGTCTGCCACCAACACACCTCCACCAATGGTTTTTAGCGCAAACTCATCCCAAACCCTAACTACGCCGGCAACGCCCTCATTGGTGTCTTTCTTTCCAAAAGAGAAGAGCCTAGTGCAGATTAGGGAGTTAGCCGGAGATTCGCCGCCATCCTCTTGCACCGATGAGCTAGTCCGGTTCTCACCGTGCCTCTCCTACGTGGCGTCACTGCTGAAAAACCTCTTTGACTCTCCGGCATCTAAGTGCTGCGACTCGTTCTCTTCGATGGAGGAGTCCGGCAGCACCGTTTGCCTCTGCTACCTAGCTCATCTTCCGTCTTCGTTGAGACTGGGCAGGAGTGCATCGGGGATGGGCTGGGTTCATGCCGAGATTGATGATGGTGATGTCGGGGCGCGCTCGGCTGGAGTTCGATCCGGGCTGGATCGTGGCTGGGGAAGGGCGTTGCTTGTCGGCGGAGGAGGCCGAAGTCGGTGGAGGAGGCCGGTGTTCTCGTTCTCTTCGGTGGAGAAGGCCGTCGGGGACTGCAACTCGTTCTCTTTGGTGAAGGTGGGTGCCCAGAGAAGAAATATGGGTGCCCAGTTCAAGTCAGATGAAGTATATTGTATATTATGGGTTGCACAAGACTGTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

256

Amino Acids

27.54

Weight (kDa)

6.97

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 95 - 148 2.7e-06 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 60, 686, 707
AccII CGCG 1 cut(s) 529
AciI CCGC 2 cut(s) 281, 588
AclWI GGATC 2 cut(s) 540, 564
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 1 cut(s) 763
AgsI TTSAA 2 cut(s) 13, 718
AluBI AGCT 2 cut(s) 304, 440
AluI AGCT 2 cut(s) 304, 440
Alw26I GTCTC 2 cut(s) 40, 454
AlwI GGATC 2 cut(s) 540, 564
AoxI GGCC 3 cut(s) 595, 614, 645
ApeKI GCWGC 2 cut(s) 381, 414
AspLEI GCGC 3 cut(s) 176, 529, 531
AsuC2I CCSGG 1 cut(s) 550
AsuHPI GGTGA 3 cut(s) 309, 527, 688
BaeGI GKGCMC 2 cut(s) 691, 712
BanI GGYRCC 3 cut(s) 60, 686, 707
BauI CACGAG 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 2 cut(s) 368, 426
BccI CCATC 4 cut(s) 292, 394, 478, 506
BceAI ACGGC 1 cut(s) 632
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BcnI CCSGG 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 40, 454
BfaI CTAG 4 cut(s) 120, 248, 305, 437
BisI GCNGC 3 cut(s) 281, 382, 415
BlsI GCNGC 3 cut(s) 282, 383, 416
Bme1390I CCNGG 1 cut(s) 550
BmiI GGNNCC 3 cut(s) 62, 688, 709
BmrFI CCNGG 1 cut(s) 550
BmrI ACTGGG 2 cut(s) 473, 706
BmsI GCATC 2 cut(s) 380, 485
BmuI ACTGGG 2 cut(s) 473, 706
BpiI GAAGAC 1 cut(s) 444
BpmI CTGGAG 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 550
BsaAI YACGTR 2 cut(s) 334, 765
BsaHI GRCGYC 1 cut(s) 338
BsaWI WCCGGW 1 cut(s) 309
Bse118I RCCGGY 3 cut(s) 57, 202, 616
Bse1I ACTGG 2 cut(s) 468, 712
Bse3DI GCAATG 1 cut(s) 40
BseGI GGATG 3 cut(s) 182, 284, 489
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 2 cut(s) 468, 712
BsePI GCGCGC 1 cut(s) 527
BseRI GAGGAG 3 cut(s) 419, 606, 625
BseSI GKGCMC 2 cut(s) 691, 712
BseXI GCAGC 2 cut(s) 368, 426
BseYI CCCAGC 2 cut(s) 489, 564
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 529
BshFI GGCC 3 cut(s) 597, 616, 647
BshNI GGYRCC 3 cut(s) 60, 686, 707
BsiSI CCGG 8 cut(s) 58, 203, 270, 310, 368, 411, 549, 617
BslFI GGGAC 2 cut(s) 98, 668
BsmAI GTCTC 2 cut(s) 40, 454
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 2 cut(s) 98, 668
BsnI GGCC 3 cut(s) 597, 616, 647
Bsp1286I GDGCHC 2 cut(s) 691, 712
Bsp143I GATC 2 cut(s) 545, 556
BspACI CCGC 2 cut(s) 281, 588
BspANI GGCC 3 cut(s) 597, 616, 647
BspFNI CGCG 1 cut(s) 529
BspLI GGNNCC 3 cut(s) 62, 688, 709
BspPI GGATC 2 cut(s) 540, 564
BspQI GCTCTTC 1 cut(s) 236
BspT107I GGYRCC 3 cut(s) 60, 686, 707
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 3 cut(s) 57, 202, 616
BsrI ACTGG 2 cut(s) 468, 712
BssAI RCCGGY 3 cut(s) 57, 202, 616
BssHII GCGCGC 1 cut(s) 527
BssMI GATC 2 cut(s) 545, 556
BssNI GRCGYC 1 cut(s) 338
BssSI CACGAG 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 26
Bst4CI ACNGT 4 cut(s) 133, 321, 421, 761
Bst6I CTCTTC 3 cut(s) 236, 400, 637
BstACI GRCGYC 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 423
BstBAI YACGTR 2 cut(s) 334, 765
BstC8I GCNNGC 3 cut(s) 59, 204, 529
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 3 cut(s) 182, 284, 489
BstFNI CGCG 1 cut(s) 529
BstHHI GCGC 3 cut(s) 176, 529, 531
BstKTI GATC 2 cut(s) 548, 559
BstMAI GTCTC 2 cut(s) 40, 454
BstMBI GATC 2 cut(s) 545, 556
BstMWI GCNNNNNNNGC 4 cut(s) 208, 423, 533, 594
BstSCI CCNGG 1 cut(s) 548
BstSLI GKGCMC 2 cut(s) 691, 712
BstSNI TACGTA 1 cut(s) 765
BstUI CGCG 1 cut(s) 529
BstV1I GCAGC 2 cut(s) 368, 426
BstV2I GAAGAC 1 cut(s) 444
BsuRI GGCC 3 cut(s) 597, 616, 647
BtsCI GGATG 3 cut(s) 182, 284, 489
BtsI GCAGTG 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 341
Cac8I GCNNGC 3 cut(s) 59, 204, 529
CfoI GCGC 3 cut(s) 176, 529, 531
Cfr10I RCCGGY 3 cut(s) 57, 202, 616
CseI GACGC 2 cut(s) 22, 327
Csp6I GTAC 1 cut(s) 762
CviAII CATG 3 cut(s) 65, 80, 497
CviQI GTAC 1 cut(s) 762
DdeI CTNAG 1 cut(s) 375
DpnI GATC 2 cut(s) 547, 558
DpnII GATC 2 cut(s) 545, 556
Eam1104I CTCTTC 3 cut(s) 236, 400, 637
EarI CTCTTC 3 cut(s) 236, 400, 637
EciI GGCGGA 1 cut(s) 603
Eco105I TACGTA 1 cut(s) 765
Eco32I GATATC 1 cut(s) 115
EcoRV GATATC 1 cut(s) 115
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 3 cut(s) 68, 83, 500
FaiI YATR 8 cut(s) 66, 71, 81, 498, 704, 733, 740, 745
FaqI GGGAC 2 cut(s) 98, 668
FatI CATG 3 cut(s) 64, 79, 496
Fnu4HI GCNGC 3 cut(s) 281, 382, 415
FokI GGATG 3 cut(s) 169, 271, 496
Fsp4HI GCNGC 3 cut(s) 281, 382, 415
FspBI CTAG 4 cut(s) 120, 248, 305, 437
GlaI GCGC 3 cut(s) 175, 528, 530
GluI GCNGC 3 cut(s) 281, 382, 415
GsaI CCCAGC 2 cut(s) 493, 568
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 3 cut(s) 597, 616, 647
HapII CCGG 8 cut(s) 58, 203, 270, 310, 368, 411, 549, 617
HgaI GACGC 2 cut(s) 22, 327
HhaI GCGC 3 cut(s) 176, 529, 531
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 3 cut(s) 68, 83, 500
Hin6I GCGC 3 cut(s) 174, 527, 529
HinP1I GCGC 3 cut(s) 174, 527, 529
HinfI GANTC 4 cut(s) 275, 362, 386, 407
HpaII CCGG 8 cut(s) 58, 203, 270, 310, 368, 411, 549, 617
HphI GGTGA 3 cut(s) 309, 527, 688
Hpy188I TCNGA 1 cut(s) 724
Hpy99I CGWCG 1 cut(s) 653
HpyAV CCTTC 3 cut(s) 564, 637, 673
HpyCH4III ACNGT 4 cut(s) 133, 321, 421, 761
HpyCH4IV ACGT 2 cut(s) 333, 764
HpyCH4V TGCA 5 cut(s) 253, 294, 476, 660, 752
HpyF10VI GCNNNNNNNGC 4 cut(s) 208, 423, 533, 594
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 2 cut(s) 333, 764
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 3 cut(s) 68, 83, 500
HspAI GCGC 3 cut(s) 174, 527, 529
KroI GCCGGC 2 cut(s) 57, 202
KroNI GCCGGC 2 cut(s) 59, 204
Kzo9I GATC 2 cut(s) 545, 556
LguI GCTCTTC 1 cut(s) 236
Lsp1109I GCAGC 2 cut(s) 368, 426
LweI GCATC 2 cut(s) 380, 485
MaeI CTAG 4 cut(s) 120, 248, 305, 437
MaeII ACGT 2 cut(s) 333, 764
MaeIII GTNAC 1 cut(s) 339
MalI GATC 2 cut(s) 547, 558
MboI GATC 2 cut(s) 545, 556
MboII GAAGA 7 cut(s) 101, 253, 387, 437, 444, 624, 708
MhlI GDGCHC 2 cut(s) 691, 712
MlyI GAGTC 3 cut(s) 356, 380, 416
MroNI GCCGGC 2 cut(s) 57, 202
MslI CAYNNNNRTG 1 cut(s) 376
MspI CCGG 8 cut(s) 58, 203, 270, 310, 368, 411, 549, 617
MspR9I CCNGG 1 cut(s) 550
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 4 cut(s) 208, 423, 533, 594
NaeI GCCGGC 2 cut(s) 59, 204
NciI CCSGG 1 cut(s) 550
NdeII GATC 2 cut(s) 545, 556
NgoMIV GCCGGC 2 cut(s) 57, 202
NlaIII CATG 3 cut(s) 68, 83, 500
NlaIV GGNNCC 3 cut(s) 62, 688, 709
NmeAIII GCCGAG 2 cut(s) 512, 526
NmuCI GTSAC 1 cut(s) 339
PauI GCGCGC 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PdiI GCCGGC 2 cut(s) 59, 204
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 3 cut(s) 282, 383, 416
PleI GAGTC 3 cut(s) 356, 380, 415
PpsI GAGTC 3 cut(s) 356, 380, 415
Ppu21I YACGTR 2 cut(s) 334, 765
PspFI CCCAGC 2 cut(s) 489, 564
PspN4I GGNNCC 3 cut(s) 62, 688, 709
PteI GCGCGC 1 cut(s) 527
RsaI GTAC 1 cut(s) 763
RsaNI GTAC 1 cut(s) 762
RseI CAYNNNNRTG 1 cut(s) 376
SapI GCTCTTC 1 cut(s) 236
SatI GCNGC 3 cut(s) 281, 382, 415
Sau3AI GATC 2 cut(s) 545, 556
SchI GAGTC 3 cut(s) 356, 380, 416
ScrFI CCNGG 1 cut(s) 550
SduI GDGCHC 2 cut(s) 691, 712
SfaNI GCATC 2 cut(s) 380, 485
SmiMI CAYNNNNRTG 1 cut(s) 376
SnaBI TACGTA 1 cut(s) 765
SsiI CCGC 2 cut(s) 281, 588
SspMI CTAG 4 cut(s) 120, 248, 305, 437
StyD4I CCNGG 1 cut(s) 548
TaaI ACNGT 4 cut(s) 133, 321, 421, 761
TaiI ACGT 2 cut(s) 336, 767
TaqI TCGA 2 cut(s) 398, 544
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 1 cut(s) 275
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 2 cut(s) 381, 414
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 2 cut(s) 485, 741
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 1 cut(s) 348
XspI CTAG 4 cut(s) 120, 248, 305, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.